Wall clock time and date at job start Mon Mar 30 2020 05:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86800 * 120.00318 * 2 1 4 4 H 1.48497 * 109.47049 * 269.99879 * 3 2 1 5 5 H 1.48498 * 109.46865 * 29.99784 * 3 2 1 6 6 H 1.48493 * 109.47262 * 149.99766 * 3 2 1 7 7 C 1.40065 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00214 * 179.97438 * 7 2 1 9 9 C 1.41592 * 120.00187 * 0.02562 * 7 2 1 10 10 N 1.33471 * 119.28305 * 359.97161 * 9 7 2 11 11 C 1.31888 * 120.68647 * 180.02562 * 10 9 7 12 12 C 1.39100 * 119.25756 * 359.74302 * 11 10 9 13 13 C 1.39063 * 118.67311 * 0.50473 * 12 11 10 14 14 C 1.50697 * 120.36919 * 179.77770 * 13 12 11 15 15 C 1.50702 * 109.47249 * 124.71893 * 14 13 12 16 16 C 1.33381 * 125.20592 * 89.99660 * 15 14 13 17 17 C 1.38427 * 114.92374 * 179.97438 * 16 15 14 18 18 C 1.33387 * 114.91991 * 0.25034 * 17 16 15 19 19 S 1.75886 * 109.59194 * 359.63459 * 18 17 16 20 20 N 1.31902 * 119.25795 * 359.49377 * 13 12 11 21 21 H 0.97002 * 119.99930 * 0.02562 * 1 2 3 22 22 H 1.07995 * 120.37091 * 180.02562 * 11 10 9 23 23 H 1.07993 * 120.66257 * 180.27324 * 12 11 10 24 24 H 1.08996 * 109.46926 * 4.71702 * 14 13 12 25 25 H 1.08996 * 109.46829 * 244.71938 * 14 13 12 26 26 H 1.08001 * 122.53741 * 359.97438 * 16 15 14 27 27 H 1.08002 * 122.53759 * 179.97438 * 17 16 15 28 28 H 1.08002 * 125.20431 * 179.75072 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.4885 2.0463 -1.4001 5 1 1.4384 2.6526 0.7000 6 1 3.5384 1.4401 0.7000 7 6 2.0071 -1.2130 0.0005 8 1 3.0872 -1.2131 0.0001 9 6 1.2992 -2.4392 0.0005 10 7 -0.0354 -2.4225 0.0006 11 6 -0.7227 -3.5482 0.0011 12 6 -0.0411 -4.7608 -0.0039 13 6 1.3494 -4.7447 0.0015 14 6 2.1263 -6.0360 0.0015 15 6 3.0832 -6.0465 -1.1627 16 6 4.3366 -5.5915 -1.1320 17 6 5.0281 -5.7059 -2.3257 18 6 4.3345 -6.2491 -3.3272 19 16 2.7181 -6.6613 -2.7697 20 7 1.9807 -3.5866 0.0010 21 1 -0.4850 0.8401 -0.0004 22 1 -1.8024 -3.5287 0.0007 23 1 -0.5811 -5.6960 -0.0080 24 1 1.4363 -6.8750 -0.0876 25 1 2.6860 -6.1232 0.9327 26 1 4.7785 -5.1660 -0.2431 27 1 6.0503 -5.3761 -2.4388 28 1 4.7088 -6.4126 -4.3270 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259738107.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:51 Heat of formation + Delta-G solvation = 55.562054 kcal Electronic energy + Delta-G solvation = -14651.300501 eV Core-core repulsion = 12179.116666 eV Total energy + Delta-G solvation = -2472.183835 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.87415 -38.68150 -35.91190 -34.62627 -32.92459 -31.20947 -28.40072 -27.54938 -24.47061 -23.73132 -22.82926 -20.10846 -19.36198 -18.17228 -17.72849 -16.68349 -16.36336 -16.12900 -15.53108 -15.06434 -14.50784 -14.39372 -13.98477 -13.66457 -13.38672 -13.14701 -12.92884 -12.88411 -12.64792 -12.39865 -11.95586 -11.66559 -11.26061 -10.90855 -10.88112 -9.84384 -9.54362 -9.31869 -9.18937 -8.41547 -6.72520 0.14167 0.74539 0.79335 1.04279 1.14925 1.39117 1.50287 1.55158 1.94995 2.20135 2.76347 3.75880 3.83559 4.03654 4.13613 4.22496 4.28745 4.63175 4.68247 4.75610 4.81200 4.83857 5.05330 5.19552 5.29799 5.40926 5.50292 5.67471 5.83701 6.17449 6.56491 6.66444 7.23299 8.25367 8.39643 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.025852 B = 0.006917 C = 0.005889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.829468 B = 4047.163109 C = 4753.456042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.025 3.975 3 Si 0.997 3.003 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.257 1.257 7 C -0.441 4.441 8 H 0.086 0.914 9 C 0.364 3.636 10 N -0.547 5.547 11 C 0.136 3.864 12 C -0.363 4.363 13 C 0.177 3.823 14 C 0.011 3.989 15 C -0.168 4.168 16 C -0.137 4.137 17 C -0.141 4.141 18 C -0.217 4.217 19 S 0.076 5.924 20 N -0.600 5.600 21 H 0.283 0.717 22 H 0.155 0.845 23 H 0.141 0.859 24 H 0.107 0.893 25 H 0.101 0.899 26 H 0.134 0.866 27 H 0.159 0.841 28 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.146 -8.845 -3.530 10.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.198 4.198 3 Si 0.816 3.184 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.180 1.180 7 C -0.476 4.476 8 H 0.104 0.896 9 C 0.126 3.874 10 N -0.265 5.265 11 C -0.037 4.037 12 C -0.389 4.389 13 C 0.024 3.976 14 C -0.029 4.029 15 C -0.285 4.285 16 C -0.167 4.167 17 C -0.171 4.171 18 C -0.352 4.352 19 S 0.338 5.662 20 N -0.320 5.320 21 H 0.094 0.906 22 H 0.172 0.828 23 H 0.159 0.841 24 H 0.125 0.875 25 H 0.120 0.880 26 H 0.152 0.848 27 H 0.177 0.823 28 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 4.210 -8.442 -4.212 10.331 hybrid contribution 0.722 0.574 0.705 1.161 sum 4.932 -7.868 -3.507 9.926 Atomic orbital electron populations 1.70207 1.08889 1.29576 1.28537 1.27028 0.95866 1.04558 0.92348 0.84996 0.78852 0.74910 0.79637 1.18543 1.18583 1.18013 1.19634 0.94661 0.88936 1.44373 0.89629 1.20364 0.86484 0.91696 0.88873 1.69324 1.08627 1.28736 1.19801 1.23446 1.00609 0.89008 0.90595 1.22222 0.95444 0.99827 1.21438 1.21524 0.91619 0.93924 0.90545 1.19031 0.95518 0.92797 0.95523 1.24262 0.98474 1.07371 0.98389 1.20282 0.94341 1.01785 1.00282 1.20399 1.02478 1.02178 0.92072 1.25866 0.96231 1.08645 1.04470 1.84031 1.15318 1.61932 1.04878 1.68474 1.41270 0.98434 1.23830 0.90606 0.82788 0.84103 0.87499 0.88043 0.84825 0.82319 0.79369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.76 11.43 21.84 0.25 -40.51 15 2 C 0.03 1.30 5.50 85.31 0.47 1.77 15 3 Si 1.00 38.74 29.56 68.60 2.03 40.77 15 4 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 5 H -0.26 -9.48 7.11 99.48 0.71 -8.78 15 6 H -0.26 -9.71 7.11 99.48 0.71 -9.00 15 7 C -0.44 -25.26 9.38 23.54 0.22 -25.04 15 8 H 0.09 4.77 7.85 -2.91 -0.02 4.74 15 9 C 0.36 21.38 7.37 135.15 1.00 22.38 15 10 N -0.55 -31.37 7.88 -193.89 -1.53 -32.90 15 11 C 0.14 6.56 11.31 84.89 0.96 7.52 15 12 C -0.36 -15.69 9.83 22.67 0.22 -15.46 15 13 C 0.18 7.95 6.20 42.75 0.27 8.21 15 14 C 0.01 0.37 6.14 29.10 0.18 0.55 15 15 C -0.17 -5.70 5.57 24.59 0.14 -5.56 15 16 C -0.14 -4.54 10.05 21.22 0.21 -4.33 15 17 C -0.14 -3.96 10.18 21.22 0.22 -3.75 15 18 C -0.22 -5.69 11.23 66.72 0.75 -4.94 15 19 S 0.08 2.25 23.33 -56.49 -1.32 0.94 15 20 N -0.60 -32.01 10.06 -182.01 -1.83 -33.84 15 21 H 0.28 13.72 8.29 -92.71 -0.77 12.96 15 22 H 0.15 6.34 8.06 -2.91 -0.02 6.32 15 23 H 0.14 4.90 8.01 -2.91 -0.02 4.88 15 24 H 0.11 3.00 7.94 -2.39 -0.02 2.98 15 25 H 0.10 3.22 8.14 -2.39 -0.02 3.20 15 26 H 0.13 4.47 8.06 -2.91 -0.02 4.44 15 27 H 0.16 3.57 8.06 -2.91 -0.02 3.55 15 28 H 0.19 3.63 8.06 -2.91 -0.02 3.61 15 Total: -1.00 -67.74 268.76 3.40 -64.34 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 1.17 Total: 19.85 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 4.63 Total: -18.64 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -3.11 Total: -107.25 kcal Atomic # 14 Polarization: 38.74 SS G_CDS: 2.03 Total: 40.77 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.32 Total: 0.94 kcal Total: -67.74 3.40 -64.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259738107.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.900 kcal (2) G-P(sol) polarization free energy of solvation -67.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds