Wall clock time and date at job start Mon Mar 30 2020 05:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38283 * 120.86822 * 2 1 4 4 C 1.38393 * 119.34289 * 180.02562 * 3 2 1 5 5 N 1.31984 * 121.16374 * 359.97438 * 4 3 2 6 6 C 1.31619 * 121.90915 * 359.74202 * 5 4 3 7 7 C 1.39952 * 120.50625 * 0.53854 * 6 5 4 8 8 C 1.47191 * 120.58983 * 179.72973 * 7 6 5 9 9 S 1.72004 * 127.41078 * 131.07633 * 8 7 6 10 10 N 1.69398 * 96.23998 * 180.19906 * 9 8 7 11 11 C 1.29263 * 108.41036 * 359.82517 * 10 9 8 12 12 C 1.39818 * 117.06808 * 359.97438 * 11 10 9 13 13 C 1.40820 * 123.44957 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99964 * 150.98771 * 13 12 11 15 15 C 1.39897 * 120.00224 * 330.99074 * 13 12 11 16 16 N 1.30944 * 119.99546 * 334.91952 * 15 13 12 17 17 Si 1.86794 * 120.00295 * 154.92204 * 15 13 12 18 18 H 1.48494 * 109.47430 * 179.97438 * 17 15 13 19 19 H 1.48505 * 109.47067 * 299.99985 * 17 15 13 20 20 H 1.48501 * 109.47023 * 59.99688 * 17 15 13 21 21 H 1.08997 * 109.46922 * 269.59104 * 1 2 3 22 22 H 1.08995 * 109.47376 * 29.59568 * 1 2 3 23 23 H 1.09006 * 109.47141 * 149.59291 * 1 2 3 24 24 H 1.07997 * 120.32884 * 0.02562 * 3 2 1 25 25 H 1.07999 * 119.41916 * 180.02562 * 4 3 2 26 26 H 1.08003 * 119.74514 * 180.29409 * 6 5 4 27 27 H 1.08006 * 121.46043 * 180.02562 * 11 10 9 28 28 H 0.96992 * 120.00223 * 353.85336 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.1870 0.0000 4 6 3.6000 1.1501 -0.0005 5 7 4.2527 0.0030 -0.0005 6 6 3.6256 -1.1542 0.0050 7 6 2.2270 -1.2044 -0.0002 8 6 1.5239 -2.4976 0.0000 9 16 0.2322 -2.9845 1.0261 10 7 0.0523 -4.5366 0.3717 11 6 0.9188 -4.6829 -0.5763 12 6 1.7620 -3.5993 -0.8403 13 6 2.7529 -3.6127 -1.8408 14 1 3.0435 -2.6922 -2.3252 15 6 3.3607 -4.8182 -2.2074 16 7 3.4068 -5.8131 -1.3573 17 14 4.1066 -5.0085 -3.9093 18 1 4.6844 -6.3694 -4.0472 19 1 3.0525 -4.8113 -4.9366 20 1 5.1763 -3.9957 -4.0970 21 1 -0.3633 -0.0073 1.0276 22 1 -0.3634 0.8935 -0.5075 23 1 -0.3634 -0.8864 -0.5202 24 1 1.6962 2.1333 0.0004 25 1 4.1553 2.0764 -0.0001 26 1 4.1948 -2.0721 0.0096 27 1 0.9877 -5.6015 -1.1401 28 1 3.1006 -5.6867 -0.4457 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259738316.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:14 Heat of formation + Delta-G solvation = 29.896120 kcal Electronic energy + Delta-G solvation = -15031.623161 eV Core-core repulsion = 12558.326368 eV Total energy + Delta-G solvation = -2473.296794 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.95118 -39.41748 -35.52774 -35.06957 -33.20335 -30.66807 -28.71167 -27.37590 -25.22988 -23.73413 -22.70014 -21.29764 -19.43028 -18.14439 -17.18292 -17.08995 -16.55550 -15.76935 -15.50399 -15.18222 -14.86781 -14.39098 -14.12562 -13.84903 -13.71071 -13.50449 -13.39593 -12.87875 -12.26339 -12.15637 -12.08945 -11.91707 -11.25418 -10.97671 -10.69077 -10.27015 -10.14153 -9.51956 -9.36357 -9.22829 -6.47293 -0.25601 0.37831 0.55010 1.14253 1.37416 1.49640 1.56471 1.80856 1.97851 2.30190 2.89295 3.06623 3.65447 3.91669 3.97436 4.03014 4.35047 4.44096 4.61565 4.68667 4.73274 4.83298 5.02473 5.12529 5.21147 5.27429 5.46524 5.60063 5.76980 5.89555 6.02245 6.38258 6.66966 7.15107 7.91388 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.019701 B = 0.010326 C = 0.007462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.925764 B = 2711.052871 C = 3751.472114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.068 4.068 3 C -0.160 4.160 4 C 0.069 3.931 5 N -0.509 5.509 6 C 0.094 3.906 7 C -0.015 4.015 8 C -0.349 4.349 9 S 0.172 5.828 10 N -0.486 5.486 11 C 0.078 3.922 12 C 0.012 3.988 13 C -0.487 4.487 14 H 0.072 0.928 15 C 0.010 3.990 16 N -0.804 5.804 17 Si 1.113 2.887 18 H -0.269 1.269 19 H -0.260 1.260 20 H -0.264 1.264 21 H 0.081 0.919 22 H 0.095 0.905 23 H 0.052 0.948 24 H 0.171 0.829 25 H 0.186 0.814 26 H 0.130 0.870 27 H 0.164 0.836 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.960 9.602 -0.784 9.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.077 4.077 3 C -0.180 4.180 4 C -0.088 4.088 5 N -0.219 5.219 6 C -0.064 4.064 7 C -0.020 4.020 8 C -0.476 4.476 9 S 0.325 5.675 10 N -0.303 5.303 11 C -0.128 4.128 12 C -0.001 4.001 13 C -0.521 4.521 14 H 0.090 0.910 15 C -0.208 4.208 16 N -0.427 5.427 17 Si 0.930 3.070 18 H -0.193 1.193 19 H -0.185 1.185 20 H -0.188 1.188 21 H 0.099 0.901 22 H 0.114 0.886 23 H 0.071 0.929 24 H 0.188 0.812 25 H 0.203 0.797 26 H 0.148 0.852 27 H 0.180 0.820 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.983 8.344 -0.140 8.578 hybrid contribution -0.276 0.450 -0.116 0.540 sum -2.259 8.794 -0.256 9.083 Atomic orbital electron populations 1.20817 0.89257 1.03338 1.03092 1.20876 0.97788 0.92158 0.96844 1.22216 0.95287 0.98731 1.01718 1.23285 0.92524 0.96310 0.96643 1.67555 1.41941 0.98931 1.13435 1.22711 0.91458 0.95397 0.96848 1.18679 0.93267 0.90727 0.99296 1.22671 1.13531 1.02144 1.09215 1.82500 1.35288 1.07732 1.41983 1.75858 1.25730 1.13642 1.15086 1.23034 0.92906 1.00860 0.96002 1.18403 0.96603 0.90265 0.94856 1.20050 1.18010 0.97577 1.16449 0.90957 1.28372 0.93965 0.90470 1.07966 1.70683 1.31318 1.34450 1.06269 0.83025 0.77078 0.77786 0.69139 1.19301 1.18468 1.18839 0.90074 0.88613 0.92872 0.81201 0.79738 0.85220 0.81961 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.17 8.84 71.24 0.63 -2.54 15 2 C -0.07 -2.33 5.96 -19.34 -0.12 -2.45 15 3 C -0.16 -4.45 9.80 22.32 0.22 -4.23 15 4 C 0.07 2.07 11.17 84.71 0.95 3.02 15 5 N -0.51 -19.60 10.34 -194.38 -2.01 -21.61 15 6 C 0.09 4.08 10.20 85.14 0.87 4.95 15 7 C -0.02 -0.64 5.63 -20.00 -0.11 -0.76 15 8 C -0.35 -16.19 5.23 25.20 0.13 -16.06 15 9 S 0.17 7.40 21.85 -56.49 -1.23 6.16 15 10 N -0.49 -22.98 11.96 -59.86 -0.72 -23.70 15 11 C 0.08 3.78 9.32 85.45 0.80 4.57 15 12 C 0.01 0.61 5.17 -21.69 -0.11 0.50 15 13 C -0.49 -24.25 7.98 23.30 0.19 -24.06 15 14 H 0.07 3.68 7.82 -2.91 -0.02 3.66 15 15 C 0.01 0.46 5.07 85.23 0.43 0.89 15 16 N -0.80 -40.02 12.61 21.83 0.28 -39.75 15 17 Si 1.11 40.44 30.00 68.60 2.06 42.50 15 18 H -0.27 -9.59 7.11 99.48 0.71 -8.88 15 19 H -0.26 -8.89 7.11 99.48 0.71 -8.18 15 20 H -0.26 -9.17 7.11 99.48 0.71 -8.46 15 21 H 0.08 2.19 8.14 -2.39 -0.02 2.17 15 22 H 0.10 2.13 8.10 -2.39 -0.02 2.11 15 23 H 0.05 1.83 6.54 -2.38 -0.02 1.81 15 24 H 0.17 3.16 8.06 -2.91 -0.02 3.13 15 25 H 0.19 3.89 8.06 -2.91 -0.02 3.86 15 26 H 0.13 6.11 7.78 -2.91 -0.02 6.09 15 27 H 0.16 7.83 7.16 -2.91 -0.02 7.81 15 28 H 0.28 14.63 6.91 -92.71 -0.64 13.99 15 Total: -1.00 -57.01 261.00 3.55 -53.46 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 1.31 Total: 19.10 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 3.87 Total: -36.16 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -2.45 Total: -85.06 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.06 Total: 42.50 kcal Atomic # 16 Polarization: 7.40 SS G_CDS: -1.23 Total: 6.16 kcal Total: -57.01 3.55 -53.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259738316.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.356 kcal (2) G-P(sol) polarization free energy of solvation -57.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds