Wall clock time and date at job start Mon Mar 30 2020 05:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37980 * 120.07558 * 2 1 4 4 C 1.38334 * 120.13958 * 179.74731 * 3 2 1 5 5 C 1.38371 * 120.29189 * 0.55537 * 4 3 2 6 6 C 1.37949 * 120.14114 * 359.69712 * 5 4 3 7 7 C 1.39533 * 120.06658 * 180.27475 * 2 1 3 8 8 C 1.47884 * 120.14674 * 0.02562 * 7 2 1 9 9 N 1.31770 * 127.83335 * 172.96938 * 8 7 2 10 10 C 1.32743 * 113.65287 * 179.84515 * 9 8 7 11 11 C 1.41279 * 120.97581 * 180.23519 * 10 9 8 12 12 H 1.07999 * 119.99632 * 0.27122 * 11 10 9 13 13 C 1.39858 * 119.99980 * 180.26958 * 11 10 9 14 14 N 1.30857 * 120.00120 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99805 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47097 * 60.00218 * 15 13 11 17 17 H 1.48493 * 109.46987 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47166 * 300.00420 * 15 13 11 19 19 N 1.31668 * 118.04961 * 0.47413 * 10 9 8 20 20 S 1.56652 * 108.40071 * 359.74133 * 19 10 9 21 21 H 1.09005 * 109.47042 * 262.15066 * 1 2 3 22 22 H 1.08993 * 109.47593 * 142.14495 * 1 2 3 23 23 H 1.09002 * 109.46705 * 22.13770 * 1 2 3 24 24 H 1.08004 * 119.92507 * 0.02562 * 3 2 1 25 25 H 1.08001 * 119.85336 * 180.25587 * 4 3 2 26 26 H 1.07995 * 119.93418 * 179.72591 * 5 4 3 27 27 H 1.07998 * 120.07370 * 180.02562 * 6 5 4 28 28 H 0.96997 * 119.99951 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5819 1.1956 0.0053 5 6 4.2812 0.0016 -0.0010 6 6 3.6019 -1.1990 -0.0063 7 6 2.2061 -1.2076 -0.0058 8 6 1.4715 -2.4910 -0.0125 9 7 1.9664 -3.7049 -0.1458 10 6 1.0473 -4.6619 -0.1079 11 6 1.4085 -6.0222 -0.2311 12 1 2.4458 -6.2965 -0.3539 13 6 0.4227 -7.0136 -0.1940 14 7 -0.8343 -6.6812 -0.0457 15 14 0.9001 -8.8121 -0.3576 16 1 1.8224 -9.1818 0.7460 17 1 -0.3193 -9.6564 -0.2867 18 1 1.5771 -9.0279 -1.6616 19 7 -0.2113 -4.3060 0.0431 20 16 -0.2742 -2.7443 0.1492 21 1 -0.3633 -0.1404 1.0181 22 1 -0.3634 -0.8113 -0.6306 23 1 -0.3633 0.9519 -0.3873 24 1 1.6585 2.1294 0.0004 25 1 4.1184 2.1329 0.0094 26 1 5.3611 0.0096 -0.0013 27 1 4.1488 -2.1303 -0.0107 28 1 -1.5180 -7.3688 -0.0203 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259740511.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:41 Heat of formation + Delta-G solvation = 69.636100 kcal Electronic energy + Delta-G solvation = -14637.920016 eV Core-core repulsion = 12166.346478 eV Total energy + Delta-G solvation = -2471.573539 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.20081 -38.27220 -33.56973 -32.79933 -31.59093 -29.46734 -27.42819 -26.67613 -24.11157 -21.84085 -20.87077 -18.98144 -17.37818 -17.06125 -16.11565 -14.92861 -14.84023 -14.65201 -14.11921 -13.60545 -13.08716 -13.02082 -12.95029 -12.40673 -11.87953 -11.46860 -11.20571 -11.15402 -10.99809 -10.82551 -10.39088 -9.81938 -9.73829 -9.21747 -9.17561 -8.59385 -8.39902 -8.26125 -7.34691 -6.53419 -4.57908 1.09691 1.61405 2.50199 2.68485 3.06949 3.10474 3.13717 3.92098 3.96616 4.04439 4.29668 4.85592 5.04320 5.10112 5.30400 5.38424 5.47523 5.63666 5.91697 5.93760 6.03658 6.16706 6.40138 6.53138 6.65799 6.76350 6.94418 7.17990 7.19905 7.52391 8.04939 8.53564 8.71127 9.48504 10.35605 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.043331 B = 0.006260 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.040952 B = 4472.115765 C = 5098.337780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.066 4.066 3 C -0.123 4.123 4 C -0.117 4.117 5 C -0.131 4.131 6 C -0.079 4.079 7 C 0.003 3.997 8 C 0.042 3.958 9 N -0.484 5.484 10 C 0.338 3.662 11 C -0.408 4.408 12 H 0.090 0.910 13 C 0.065 3.935 14 N -0.742 5.742 15 Si 0.921 3.079 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.265 1.265 19 N -0.552 5.552 20 S 0.178 5.822 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.070 0.930 24 H 0.123 0.877 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.132 0.868 28 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.098 11.741 0.215 12.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.069 4.069 3 C -0.141 4.141 4 C -0.137 4.137 5 C -0.150 4.150 6 C -0.101 4.101 7 C 0.000 4.000 8 C -0.246 4.246 9 N -0.207 5.207 10 C 0.079 3.921 11 C -0.454 4.454 12 H 0.108 0.892 13 C -0.158 4.158 14 N -0.369 5.369 15 Si 0.745 3.255 16 H -0.190 1.190 17 H -0.203 1.203 18 H -0.190 1.190 19 N -0.389 5.389 20 S 0.318 5.682 21 H 0.099 0.901 22 H 0.103 0.897 23 H 0.089 0.911 24 H 0.141 0.859 25 H 0.137 0.863 26 H 0.139 0.861 27 H 0.150 0.850 28 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.603 11.360 0.339 11.659 hybrid contribution 1.087 -1.309 -0.178 1.711 sum 3.690 10.050 0.161 10.708 Atomic orbital electron populations 1.21113 0.90949 1.03141 1.03761 1.19965 0.96226 0.91950 0.98796 1.20849 0.94143 0.96895 1.02260 1.21144 0.94220 0.97865 1.00456 1.21041 0.99739 0.92251 1.01933 1.21357 0.93042 0.98627 0.97081 1.17704 0.92393 0.88584 1.01343 1.28007 0.98889 0.94249 1.03425 1.69073 1.34076 0.98226 1.19285 1.20105 0.81537 0.95154 0.95282 1.18756 0.95197 0.86513 1.44896 0.89199 1.25881 0.94467 1.01517 0.93949 1.69987 1.00554 1.34766 1.31590 0.86163 0.78688 0.80773 0.79852 1.18959 1.20349 1.18953 1.74758 1.20844 1.03914 1.39404 1.82112 1.10289 1.07336 1.68505 0.90137 0.89698 0.91148 0.85918 0.86292 0.86051 0.85022 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.35 36.01 0.30 -1.56 15 2 C -0.07 -1.03 5.91 -104.23 -0.62 -1.64 15 3 C -0.12 -1.57 9.66 -39.64 -0.38 -1.95 15 4 C -0.12 -1.41 10.04 -39.50 -0.40 -1.80 15 5 C -0.13 -1.75 10.03 -39.64 -0.40 -2.15 15 6 C -0.08 -1.33 9.72 -39.19 -0.38 -1.71 15 7 C 0.00 0.06 5.87 -104.97 -0.62 -0.55 15 8 C 0.04 0.96 7.41 -13.63 -0.10 0.86 15 9 N -0.48 -12.81 10.63 -21.00 -0.22 -13.03 15 10 C 0.34 9.81 7.17 -160.60 -1.15 8.66 15 11 C -0.41 -11.62 9.40 -37.82 -0.36 -11.97 15 12 H 0.09 2.43 7.84 -52.49 -0.41 2.02 15 13 C 0.06 1.74 5.49 -17.36 -0.10 1.64 15 14 N -0.74 -20.89 11.57 55.54 0.64 -20.24 15 15 Si 0.92 19.61 29.56 -169.99 -5.02 14.59 15 16 H -0.26 -5.53 7.11 56.52 0.40 -5.12 15 17 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 18 H -0.26 -5.53 7.11 56.52 0.40 -5.12 15 19 N -0.55 -15.93 9.09 20.95 0.19 -15.74 15 20 S 0.18 4.16 18.92 -107.50 -2.03 2.12 15 21 H 0.08 1.10 7.95 -51.93 -0.41 0.69 15 22 H 0.09 1.38 4.97 -28.79 -0.14 1.24 15 23 H 0.07 0.77 8.03 -51.93 -0.42 0.36 15 24 H 0.12 1.21 8.05 -52.48 -0.42 0.78 15 25 H 0.12 1.07 8.06 -52.49 -0.42 0.64 15 26 H 0.12 1.29 8.06 -52.49 -0.42 0.87 15 27 H 0.13 2.30 7.95 -52.49 -0.42 1.89 15 28 H 0.27 7.03 8.30 -40.82 -0.34 6.70 15 LS Contribution 259.36 15.07 3.91 3.91 Total: -1.00 -32.06 259.36 -8.94 -40.99 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -2.20 Total: -0.41 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -4.19 Total: -12.18 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.61 Total: -49.02 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -2.03 Total: 2.12 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.06 -8.94 -40.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259740511.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.631 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds