Wall clock time and date at job start Mon Mar 30 2020 05:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37980 * 120.07558 * 2 1 4 4 C 1.38334 * 120.13958 * 179.74731 * 3 2 1 5 5 C 1.38371 * 120.29189 * 0.55537 * 4 3 2 6 6 C 1.37949 * 120.14114 * 359.69712 * 5 4 3 7 7 C 1.39533 * 120.06658 * 180.27475 * 2 1 3 8 8 C 1.47884 * 120.14674 * 0.02562 * 7 2 1 9 9 N 1.31770 * 127.83335 * 172.96938 * 8 7 2 10 10 C 1.32743 * 113.65287 * 179.84515 * 9 8 7 11 11 C 1.41279 * 120.97581 * 180.23519 * 10 9 8 12 12 H 1.07999 * 119.99632 * 0.27122 * 11 10 9 13 13 C 1.39858 * 119.99980 * 180.26958 * 11 10 9 14 14 N 1.30857 * 120.00120 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99805 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47097 * 60.00218 * 15 13 11 17 17 H 1.48493 * 109.46987 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47166 * 300.00420 * 15 13 11 19 19 N 1.31668 * 118.04961 * 0.47413 * 10 9 8 20 20 S 1.56652 * 108.40071 * 359.74133 * 19 10 9 21 21 H 1.09005 * 109.47042 * 262.15066 * 1 2 3 22 22 H 1.08993 * 109.47593 * 142.14495 * 1 2 3 23 23 H 1.09002 * 109.46705 * 22.13770 * 1 2 3 24 24 H 1.08004 * 119.92507 * 0.02562 * 3 2 1 25 25 H 1.08001 * 119.85336 * 180.25587 * 4 3 2 26 26 H 1.07995 * 119.93418 * 179.72591 * 5 4 3 27 27 H 1.07998 * 120.07370 * 180.02562 * 6 5 4 28 28 H 0.96997 * 119.99951 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1940 0.0000 4 6 3.5819 1.1956 0.0053 5 6 4.2812 0.0016 -0.0010 6 6 3.6019 -1.1990 -0.0063 7 6 2.2061 -1.2076 -0.0058 8 6 1.4715 -2.4910 -0.0125 9 7 1.9664 -3.7049 -0.1458 10 6 1.0473 -4.6619 -0.1079 11 6 1.4085 -6.0222 -0.2311 12 1 2.4458 -6.2965 -0.3539 13 6 0.4227 -7.0136 -0.1940 14 7 -0.8343 -6.6812 -0.0457 15 14 0.9001 -8.8121 -0.3576 16 1 1.8224 -9.1818 0.7460 17 1 -0.3193 -9.6564 -0.2867 18 1 1.5771 -9.0279 -1.6616 19 7 -0.2113 -4.3060 0.0431 20 16 -0.2742 -2.7443 0.1492 21 1 -0.3633 -0.1404 1.0181 22 1 -0.3634 -0.8113 -0.6306 23 1 -0.3633 0.9519 -0.3873 24 1 1.6585 2.1294 0.0004 25 1 4.1184 2.1329 0.0094 26 1 5.3611 0.0096 -0.0013 27 1 4.1488 -2.1303 -0.0107 28 1 -1.5180 -7.3688 -0.0203 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259740511.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:41 Heat of formation + Delta-G solvation = 48.871974 kcal Electronic energy + Delta-G solvation = -14638.820416 eV Core-core repulsion = 12166.346478 eV Total energy + Delta-G solvation = -2472.473939 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.69412 -39.91362 -35.49254 -34.08825 -33.07643 -31.11687 -29.39238 -27.91751 -25.67405 -23.35767 -22.18906 -20.63404 -19.30839 -18.95608 -17.42868 -16.75019 -16.16141 -16.00344 -15.73392 -15.15392 -14.54180 -14.49549 -14.15202 -13.68023 -13.23698 -13.05910 -12.97125 -12.89439 -12.36122 -12.08470 -11.91896 -11.71806 -11.47360 -11.10414 -11.05106 -10.34613 -10.01319 -9.59511 -9.09231 -8.51760 -6.68002 -0.36440 0.49429 0.82953 0.93370 1.35219 1.40174 1.50465 2.05716 2.19355 2.20473 2.91106 3.30221 3.31987 3.97057 3.99456 4.25796 4.44915 4.49380 4.73719 4.78749 4.86061 4.95082 5.11911 5.15291 5.30688 5.46693 5.58413 5.62892 5.69077 5.95492 6.10203 6.52612 6.64568 7.48134 8.39563 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.043331 B = 0.006260 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.040952 B = 4472.115765 C = 5098.337780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.067 4.067 3 C -0.116 4.116 4 C -0.094 4.094 5 C -0.128 4.128 6 C -0.094 4.094 7 C -0.047 4.047 8 C 0.063 3.937 9 N -0.526 5.526 10 C 0.316 3.684 11 C -0.449 4.449 12 H 0.088 0.912 13 C 0.019 3.981 14 N -0.782 5.782 15 Si 1.005 2.995 16 H -0.257 1.257 17 H -0.265 1.265 18 H -0.257 1.257 19 N -0.612 5.612 20 S 0.212 5.788 21 H 0.082 0.918 22 H 0.058 0.942 23 H 0.110 0.890 24 H 0.164 0.836 25 H 0.166 0.834 26 H 0.152 0.848 27 H 0.110 0.890 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.285 14.486 0.188 15.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.071 4.071 3 C -0.134 4.134 4 C -0.113 4.113 5 C -0.146 4.146 6 C -0.117 4.117 7 C -0.050 4.050 8 C -0.223 4.223 9 N -0.249 5.249 10 C 0.056 3.944 11 C -0.494 4.494 12 H 0.106 0.894 13 C -0.200 4.200 14 N -0.409 5.409 15 Si 0.824 3.176 16 H -0.181 1.181 17 H -0.189 1.189 18 H -0.181 1.181 19 N -0.450 5.450 20 S 0.353 5.647 21 H 0.100 0.900 22 H 0.076 0.924 23 H 0.129 0.871 24 H 0.182 0.818 25 H 0.183 0.817 26 H 0.170 0.830 27 H 0.128 0.872 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.774 14.127 0.316 14.626 hybrid contribution 0.812 -1.758 -0.157 1.942 sum 4.586 12.370 0.159 13.193 Atomic orbital electron populations 1.21141 0.90355 1.04126 1.03476 1.20227 0.96891 0.91839 0.98146 1.21331 0.94788 0.97038 1.00234 1.21731 0.94161 0.98970 0.96436 1.21392 1.01350 0.91279 1.00563 1.21367 0.92430 0.99642 0.98218 1.17920 0.93327 0.87658 1.06146 1.28728 0.98744 0.95111 0.99742 1.69104 1.34072 0.99169 1.22586 1.20500 0.82207 0.96201 0.95485 1.19156 0.95807 0.87561 1.46920 0.89350 1.26972 0.93939 1.06557 0.92546 1.70119 1.01846 1.36710 1.32247 0.84935 0.78786 0.73761 0.80169 1.18087 1.18949 1.18086 1.74487 1.21673 1.08019 1.40787 1.81660 1.10211 1.04232 1.68613 0.89965 0.92372 0.87108 0.81805 0.81673 0.83033 0.87181 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 8.35 71.24 0.59 -2.88 15 2 C -0.07 -1.94 5.91 -19.61 -0.12 -2.05 15 3 C -0.12 -2.35 9.66 22.23 0.21 -2.13 15 4 C -0.09 -1.71 10.04 22.32 0.22 -1.48 15 5 C -0.13 -2.96 10.03 22.23 0.22 -2.74 15 6 C -0.09 -3.14 9.72 22.52 0.22 -2.92 15 7 C -0.05 -1.75 5.87 -20.09 -0.12 -1.87 15 8 C 0.06 3.04 7.41 87.26 0.65 3.69 15 9 N -0.53 -29.56 10.63 -220.37 -2.34 -31.90 15 10 C 0.32 19.50 7.17 135.83 0.97 20.47 15 11 C -0.45 -27.08 9.40 23.41 0.22 -26.86 15 12 H 0.09 5.09 7.84 -2.91 -0.02 5.06 15 13 C 0.02 1.06 5.49 85.23 0.47 1.52 15 14 N -0.78 -45.92 11.57 21.81 0.25 -45.67 15 15 Si 1.00 41.29 29.56 68.60 2.03 43.31 15 16 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 17 H -0.27 -10.20 7.11 99.48 0.71 -9.50 15 18 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 19 N -0.61 -37.34 9.09 -87.64 -0.80 -38.14 15 20 S 0.21 10.29 18.92 -56.49 -1.07 9.22 15 21 H 0.08 2.12 7.95 -2.38 -0.02 2.10 15 22 H 0.06 1.88 4.97 -17.10 -0.08 1.79 15 23 H 0.11 1.99 8.03 -2.39 -0.02 1.97 15 24 H 0.16 2.04 8.05 -2.91 -0.02 2.01 15 25 H 0.17 1.63 8.06 -2.91 -0.02 1.61 15 26 H 0.15 2.57 8.06 -2.91 -0.02 2.55 15 27 H 0.11 4.04 7.95 -2.91 -0.02 4.02 15 28 H 0.28 14.89 8.30 -92.71 -0.77 14.12 15 Total: -1.00 -76.24 259.36 2.73 -73.50 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.11 Total: 6.93 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 3.55 Total: -17.25 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -2.89 Total: -115.72 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 16 Polarization: 10.29 SS G_CDS: -1.07 Total: 9.22 kcal Total: -76.24 2.73 -73.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259740511.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.374 kcal (2) G-P(sol) polarization free energy of solvation -76.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds