Wall clock time and date at job start Mon Mar 30 2020 05:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86806 * 119.99914 * 2 1 4 4 H 1.48498 * 109.46973 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47469 * 300.00719 * 3 2 1 6 6 H 1.48500 * 109.46582 * 60.00892 * 3 2 1 7 7 C 1.40111 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99938 * 179.97438 * 7 2 1 9 9 C 1.39397 * 120.00052 * 359.97438 * 7 2 1 10 10 S 1.75737 * 125.31111 * 359.97438 * 9 7 2 11 11 C 1.75391 * 91.38381 * 181.29557 * 10 9 7 12 12 C 1.34188 * 111.65709 * 0.13602 * 11 10 9 13 13 C 1.38712 * 125.31508 * 179.97438 * 9 7 2 14 14 C 1.48189 * 128.01251 * 356.24405 * 13 9 7 15 15 C 1.33580 * 135.34708 * 14.20337 * 14 13 9 16 16 O 1.34904 * 107.93102 * 179.20925 * 15 14 13 17 17 C 1.34893 * 110.84323 * 1.29997 * 16 15 14 18 18 C 1.32642 * 109.01462 * 359.70229 * 17 16 15 19 19 C 1.50155 * 132.60609 * 178.96598 * 18 17 16 20 20 C 1.51965 * 124.11758 * 178.40040 * 12 11 10 21 21 H 0.97001 * 120.00409 * 359.97438 * 1 2 3 22 22 H 1.08005 * 124.16902 * 180.16176 * 11 10 9 23 23 H 1.08006 * 126.03371 * 359.21470 * 15 14 13 24 24 H 1.07997 * 125.48370 * 179.76671 * 17 16 15 25 25 H 1.09002 * 109.18998 * 28.74322 * 19 18 17 26 26 H 1.09001 * 109.18890 * 269.43849 * 19 18 17 27 27 H 1.09004 * 108.87553 * 24.31834 * 20 12 11 28 28 H 1.08992 * 108.80078 * 265.81962 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8839 2.3966 -1.2123 6 1 1.8840 2.3963 1.2126 7 6 2.0093 -1.2134 -0.0005 8 1 3.0893 -1.2133 -0.0010 9 6 1.3124 -2.4206 -0.0005 10 16 -0.4375 -2.5834 0.0007 11 6 -0.3173 -4.3327 0.0395 12 6 0.9609 -4.7411 0.0532 13 6 1.8917 -3.6810 -0.0016 14 6 3.3314 -4.0235 -0.0793 15 6 4.4771 -3.3518 0.0642 16 8 5.4932 -4.2221 -0.1092 17 6 5.0259 -5.4551 -0.3937 18 6 3.7000 -5.4224 -0.4067 19 6 2.6599 -6.4706 -0.6788 20 6 1.3897 -6.1974 0.1218 21 1 -0.4851 0.8400 0.0004 22 1 -1.1672 -4.9991 0.0506 23 1 4.5730 -2.2981 0.2809 24 1 5.6336 -6.3283 -0.5798 25 1 3.0550 -7.4479 -0.4013 26 1 2.4203 -6.4700 -1.7421 27 1 0.5855 -6.8206 -0.2693 28 1 1.5659 -6.4629 1.1641 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259744342.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:46 Heat of formation + Delta-G solvation = 11.315962 kcal Electronic energy + Delta-G solvation = -15130.894587 eV Core-core repulsion = 12624.499346 eV Total energy + Delta-G solvation = -2506.395241 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.31515 -36.95891 -34.47984 -32.78482 -31.12008 -28.54403 -28.22633 -25.16479 -23.59759 -21.66108 -19.77123 -19.13876 -17.98564 -16.78811 -15.93206 -15.22939 -15.01397 -14.64826 -14.04013 -13.57058 -13.30784 -12.69965 -12.39129 -12.04207 -11.80760 -11.64455 -11.33979 -11.10493 -10.85296 -10.74434 -10.49108 -10.26286 -9.61353 -9.57481 -8.99525 -8.63935 -7.97420 -7.39835 -7.09467 -6.37925 -4.55690 2.47899 2.72745 2.89392 2.96162 3.07186 3.24027 3.55999 3.64246 3.96859 4.05646 4.30051 5.08369 5.33365 5.54559 5.68516 5.85972 6.11705 6.29243 6.38335 6.46352 6.54775 6.67451 6.75101 6.77567 6.91611 7.15106 7.51094 7.53737 7.78891 7.91872 8.09403 8.19348 8.43220 8.54446 9.73477 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.010044 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.630582 B = 2787.119712 C = 3959.191648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.052 3.948 3 Si 0.933 3.067 4 H -0.255 1.255 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.378 4.378 8 H 0.096 0.904 9 C 0.054 3.946 10 S 0.130 5.870 11 C -0.389 4.389 12 C -0.032 4.032 13 C -0.271 4.271 14 C -0.036 4.036 15 C -0.093 4.093 16 O -0.208 6.208 17 C -0.043 4.043 18 C -0.199 4.199 19 C -0.035 4.035 20 C -0.052 4.052 21 H 0.298 0.702 22 H 0.118 0.882 23 H 0.196 0.804 24 H 0.187 0.813 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.286 -3.388 -0.428 4.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.169 4.169 3 Si 0.756 3.244 4 H -0.179 1.179 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.413 4.413 8 H 0.114 0.886 9 C -0.067 4.067 10 S 0.391 5.609 11 C -0.523 4.523 12 C -0.044 4.044 13 C -0.278 4.278 14 C -0.039 4.039 15 C -0.157 4.157 16 O -0.109 6.109 17 C -0.109 4.109 18 C -0.201 4.201 19 C -0.072 4.072 20 C -0.091 4.091 21 H 0.111 0.889 22 H 0.136 0.864 23 H 0.212 0.788 24 H 0.203 0.797 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.079 -2.227 -0.430 3.077 hybrid contribution 1.180 -0.404 0.003 1.248 sum 3.260 -2.631 -0.427 4.210 Atomic orbital electron populations 1.68842 1.07671 1.30693 1.33069 1.26272 0.95116 1.02753 0.92805 0.85800 0.80639 0.78984 0.78992 1.17876 1.19320 1.19309 1.19181 0.95535 0.88752 1.37796 0.88599 1.21331 0.95065 0.94669 0.95606 1.84453 1.04611 0.95087 1.76718 1.25185 0.98158 1.02586 1.26348 1.19179 0.92236 0.93349 0.99609 1.17125 0.89128 0.90794 1.30753 1.19626 0.92990 0.91209 1.00115 1.22942 0.84351 0.94955 1.13448 1.84132 1.36475 1.17406 1.72894 1.22672 0.93820 0.87360 1.07058 1.21540 0.93738 0.96910 1.07917 1.19505 0.92913 0.94843 0.99930 1.20165 0.95727 0.93908 0.99313 0.88945 0.86386 0.78776 0.79659 0.92134 0.91672 0.92279 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.45 10.63 55.56 0.59 -17.86 15 2 C 0.05 1.20 5.50 -17.26 -0.09 1.11 15 3 Si 0.93 17.31 29.56 -169.99 -5.03 12.29 15 4 H -0.26 -4.67 7.11 56.52 0.40 -4.27 15 5 H -0.27 -4.90 7.11 56.52 0.40 -4.50 15 6 H -0.27 -4.88 7.11 56.52 0.40 -4.48 15 7 C -0.38 -9.49 9.06 -38.45 -0.35 -9.84 15 8 H 0.10 2.28 5.48 -52.49 -0.29 1.99 15 9 C 0.05 1.42 6.17 -38.97 -0.24 1.18 15 10 S 0.13 3.25 20.20 -107.50 -2.17 1.08 15 11 C -0.39 -9.32 10.93 29.31 0.32 -9.00 15 12 C -0.03 -0.78 5.75 -104.31 -0.60 -1.38 15 13 C -0.27 -6.99 6.00 -104.52 -0.63 -7.62 15 14 C -0.04 -0.86 6.27 -103.30 -0.65 -1.50 15 15 C -0.09 -2.02 11.50 29.10 0.33 -1.68 15 16 O -0.21 -4.16 10.61 2.39 0.03 -4.13 15 17 C -0.04 -0.77 12.00 28.84 0.35 -0.43 15 18 C -0.20 -4.06 6.21 -102.64 -0.64 -4.69 15 19 C -0.03 -0.62 6.19 -28.35 -0.18 -0.79 15 20 C -0.05 -1.01 5.96 -27.46 -0.16 -1.17 15 21 H 0.30 6.32 8.30 -40.82 -0.34 5.98 15 22 H 0.12 2.57 8.06 -52.48 -0.42 2.15 15 23 H 0.20 3.90 6.39 -52.48 -0.34 3.56 15 24 H 0.19 2.44 8.06 -52.49 -0.42 2.02 15 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 15 26 H 0.06 1.15 8.14 -51.93 -0.42 0.72 15 27 H 0.06 1.02 8.12 -51.93 -0.42 0.60 15 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 15 LS Contribution 252.67 15.07 3.81 3.81 Total: -1.00 -28.12 252.67 -7.60 -35.72 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -2.29 Total: 4.92 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: -2.53 Total: -35.83 kcal Atomic # 7 Polarization: -18.45 SS G_CDS: 0.59 Total: -17.86 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: 0.03 Total: -4.13 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.29 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -2.17 Total: 1.08 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.12 -7.60 -35.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259744342.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.035 kcal (2) G-P(sol) polarization free energy of solvation -28.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds