Wall clock time and date at job start Mon Mar 30 2020 05:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86806 * 119.99914 * 2 1 4 4 H 1.48498 * 109.46973 * 180.02562 * 3 2 1 5 5 H 1.48490 * 109.47469 * 300.00719 * 3 2 1 6 6 H 1.48500 * 109.46582 * 60.00892 * 3 2 1 7 7 C 1.40111 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99938 * 179.97438 * 7 2 1 9 9 C 1.39397 * 120.00052 * 359.97438 * 7 2 1 10 10 S 1.75737 * 125.31111 * 359.97438 * 9 7 2 11 11 C 1.75391 * 91.38381 * 181.29557 * 10 9 7 12 12 C 1.34188 * 111.65709 * 0.13602 * 11 10 9 13 13 C 1.38712 * 125.31508 * 179.97438 * 9 7 2 14 14 C 1.48189 * 128.01251 * 356.24405 * 13 9 7 15 15 C 1.33580 * 135.34708 * 14.20337 * 14 13 9 16 16 O 1.34904 * 107.93102 * 179.20925 * 15 14 13 17 17 C 1.34893 * 110.84323 * 1.29997 * 16 15 14 18 18 C 1.32642 * 109.01462 * 359.70229 * 17 16 15 19 19 C 1.50155 * 132.60609 * 178.96598 * 18 17 16 20 20 C 1.51965 * 124.11758 * 178.40040 * 12 11 10 21 21 H 0.97001 * 120.00409 * 359.97438 * 1 2 3 22 22 H 1.08005 * 124.16902 * 180.16176 * 11 10 9 23 23 H 1.08006 * 126.03371 * 359.21470 * 15 14 13 24 24 H 1.07997 * 125.48370 * 179.76671 * 17 16 15 25 25 H 1.09002 * 109.18998 * 28.74322 * 19 18 17 26 26 H 1.09001 * 109.18890 * 269.43849 * 19 18 17 27 27 H 1.09004 * 108.87553 * 24.31834 * 20 12 11 28 28 H 1.08992 * 108.80078 * 265.81962 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3464 -0.0006 5 1 1.8839 2.3966 -1.2123 6 1 1.8840 2.3963 1.2126 7 6 2.0093 -1.2134 -0.0005 8 1 3.0893 -1.2133 -0.0010 9 6 1.3124 -2.4206 -0.0005 10 16 -0.4375 -2.5834 0.0007 11 6 -0.3173 -4.3327 0.0395 12 6 0.9609 -4.7411 0.0532 13 6 1.8917 -3.6810 -0.0016 14 6 3.3314 -4.0235 -0.0793 15 6 4.4771 -3.3518 0.0642 16 8 5.4932 -4.2221 -0.1092 17 6 5.0259 -5.4551 -0.3937 18 6 3.7000 -5.4224 -0.4067 19 6 2.6599 -6.4706 -0.6788 20 6 1.3897 -6.1974 0.1218 21 1 -0.4851 0.8400 0.0004 22 1 -1.1672 -4.9991 0.0506 23 1 4.5730 -2.2981 0.2809 24 1 5.6336 -6.3283 -0.5798 25 1 3.0550 -7.4479 -0.4013 26 1 2.4203 -6.4700 -1.7421 27 1 0.5855 -6.8206 -0.2693 28 1 1.5659 -6.4629 1.1641 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259744342.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:46 Heat of formation + Delta-G solvation = -3.557730 kcal Electronic energy + Delta-G solvation = -15131.539559 eV Core-core repulsion = 12624.499346 eV Total energy + Delta-G solvation = -2507.040212 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.87930 -38.66691 -36.23938 -34.40757 -32.79408 -30.26968 -29.81300 -26.97191 -25.18360 -23.34984 -21.42571 -20.71795 -19.80330 -18.45776 -17.59967 -16.99235 -16.58871 -16.28573 -15.55898 -15.08455 -14.92867 -14.24982 -14.03972 -13.82458 -13.50515 -13.25334 -12.90941 -12.70678 -12.51125 -12.35383 -12.04188 -11.84438 -11.31436 -11.28733 -10.87649 -10.36019 -9.52127 -9.22932 -8.85526 -8.26721 -6.43413 0.72463 1.19030 1.35251 1.47882 1.53073 1.59979 1.67489 2.03321 2.20601 2.51499 2.52822 3.23035 3.85237 4.06933 4.30315 4.40051 4.62998 4.74943 4.86525 4.88465 4.90562 5.03770 5.16292 5.20455 5.28313 5.65187 5.72048 5.81480 5.98767 6.11694 6.30892 6.50789 6.61172 6.71227 8.00775 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.010044 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.630582 B = 2787.119712 C = 3959.191648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.015 3.985 3 Si 1.005 2.995 4 H -0.252 1.252 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.406 4.406 8 H 0.100 0.900 9 C 0.020 3.980 10 S 0.101 5.899 11 C -0.404 4.404 12 C -0.045 4.045 13 C -0.301 4.301 14 C -0.079 4.079 15 C -0.096 4.096 16 O -0.209 6.209 17 C -0.021 4.021 18 C -0.223 4.223 19 C -0.031 4.031 20 C -0.052 4.052 21 H 0.308 0.692 22 H 0.135 0.865 23 H 0.199 0.801 24 H 0.241 0.759 25 H 0.103 0.897 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.932 -4.233 -0.645 6.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.204 4.204 3 Si 0.824 3.176 4 H -0.175 1.175 5 H -0.184 1.184 6 H -0.183 1.183 7 C -0.440 4.440 8 H 0.118 0.882 9 C -0.100 4.100 10 S 0.362 5.638 11 C -0.538 4.538 12 C -0.056 4.056 13 C -0.307 4.307 14 C -0.083 4.083 15 C -0.160 4.160 16 O -0.110 6.110 17 C -0.087 4.087 18 C -0.225 4.225 19 C -0.068 4.068 20 C -0.091 4.091 21 H 0.121 0.879 22 H 0.153 0.847 23 H 0.216 0.784 24 H 0.257 0.743 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.714 -3.096 -0.647 4.878 hybrid contribution 0.690 -0.179 0.075 0.717 sum 4.404 -3.275 -0.572 5.518 Atomic orbital electron populations 1.68891 1.09001 1.32223 1.32544 1.27228 0.95884 1.05723 0.91574 0.84758 0.79221 0.74209 0.79436 1.17495 1.18430 1.18316 1.19503 0.95986 0.89531 1.38974 0.88238 1.21778 0.95569 0.95901 0.96721 1.84272 1.04962 0.96893 1.77698 1.25389 0.99108 1.01954 1.27323 1.19737 0.91892 0.95677 0.98272 1.17626 0.90931 0.91102 1.31070 1.19960 0.92511 0.93895 1.01890 1.23050 0.84493 0.95505 1.12972 1.84150 1.35924 1.18183 1.72700 1.23627 0.93712 0.87516 1.03794 1.21892 0.95301 0.95949 1.09338 1.19566 0.91498 0.96115 0.99640 1.20265 0.97529 0.91119 1.00228 0.87866 0.84667 0.78397 0.74286 0.87863 0.91659 0.90088 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.75 10.63 21.87 0.23 -38.52 15 2 C 0.01 0.69 5.50 85.29 0.47 1.15 15 3 Si 1.01 35.15 29.56 68.60 2.03 37.18 15 4 H -0.25 -8.56 7.11 99.48 0.71 -7.86 15 5 H -0.26 -8.69 7.11 99.48 0.71 -7.99 15 6 H -0.26 -8.62 7.11 99.48 0.71 -7.91 15 7 C -0.41 -21.01 9.06 23.00 0.21 -20.80 15 8 H 0.10 4.88 5.48 -2.91 -0.02 4.87 15 9 C 0.02 1.11 6.17 22.66 0.14 1.25 15 10 S 0.10 5.24 20.20 -56.49 -1.14 4.10 15 11 C -0.40 -19.74 10.93 66.90 0.73 -19.01 15 12 C -0.04 -2.16 5.75 -19.66 -0.11 -2.27 15 13 C -0.30 -15.86 6.00 -19.80 -0.12 -15.98 15 14 C -0.08 -3.75 6.27 -19.00 -0.12 -3.87 15 15 C -0.10 -4.14 11.50 66.76 0.77 -3.37 15 16 O -0.21 -7.90 10.61 -14.35 -0.15 -8.05 15 17 C -0.02 -0.69 12.00 66.66 0.80 0.11 15 18 C -0.22 -8.59 6.21 -18.51 -0.11 -8.70 15 19 C -0.03 -1.02 6.19 29.55 0.18 -0.84 15 20 C -0.05 -1.94 5.96 30.12 0.18 -1.76 15 21 H 0.31 13.18 8.30 -92.71 -0.77 12.41 15 22 H 0.14 5.92 8.06 -2.91 -0.02 5.90 15 23 H 0.20 8.08 6.39 -2.91 -0.02 8.06 15 24 H 0.24 4.86 8.06 -2.91 -0.02 4.84 15 25 H 0.10 2.50 8.14 -2.39 -0.02 2.48 15 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 15 27 H 0.08 2.62 8.12 -2.39 -0.02 2.60 15 28 H 0.06 2.30 8.14 -2.39 -0.02 2.28 15 Total: -1.00 -62.76 252.67 5.17 -57.59 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 1.19 Total: 21.79 kcal Atomic # 6 Polarization: -77.10 SS G_CDS: 3.01 Total: -74.09 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.23 Total: -38.52 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.15 Total: -8.05 kcal Atomic # 14 Polarization: 35.15 SS G_CDS: 2.03 Total: 37.18 kcal Atomic # 16 Polarization: 5.24 SS G_CDS: -1.14 Total: 4.10 kcal Total: -62.76 5.17 -57.59 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259744342.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.032 kcal (2) G-P(sol) polarization free energy of solvation -62.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds