Wall clock time and date at job start Mon Mar 30 2020 05:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33802 * 124.50962 * 2 1 4 4 C 1.37577 * 115.09147 * 179.97438 * 3 2 1 5 5 C 1.36741 * 113.26110 * 359.97438 * 4 3 2 6 6 C 1.46914 * 125.46130 * 179.97438 * 5 4 3 7 7 N 1.33278 * 118.94965 * 359.73837 * 6 5 4 8 8 C 1.31538 * 120.98306 * 179.70887 * 7 6 5 9 9 C 1.41410 * 118.90180 * 0.54439 * 8 7 6 10 10 C 1.40920 * 120.93312 * 179.75038 * 9 8 7 11 11 H 1.08001 * 119.99488 * 150.55784 * 10 9 8 12 12 C 1.39944 * 120.00275 * 330.54755 * 10 9 8 13 13 N 1.30848 * 119.99869 * 161.81630 * 12 10 9 14 14 Si 1.86809 * 120.00130 * 341.82091 * 12 10 9 15 15 H 1.48502 * 109.46790 * 95.40469 * 14 12 10 16 16 H 1.48496 * 109.46964 * 215.40282 * 14 12 10 17 17 H 1.48498 * 109.46786 * 335.40426 * 14 12 10 18 18 C 1.41407 * 118.12639 * 359.72863 * 9 8 7 19 19 N 1.31534 * 118.90471 * 0.02562 * 18 9 8 20 20 S 1.70608 * 124.50712 * 180.30388 * 2 1 3 21 21 H 1.08996 * 109.46867 * 90.00211 * 1 2 3 22 22 H 1.08999 * 109.46983 * 210.00652 * 1 2 3 23 23 H 1.09002 * 109.47100 * 330.00795 * 1 2 3 24 24 H 1.08004 * 122.45641 * 0.02562 * 3 2 1 25 25 H 1.08004 * 123.37259 * 179.97438 * 4 3 2 26 26 H 1.07999 * 120.54821 * 180.27429 * 8 7 6 27 27 H 0.97006 * 119.99991 * 180.02562 * 13 12 10 28 28 H 1.07999 * 120.54703 * 180.02562 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2651 1.1026 0.0000 4 6 3.6223 0.8774 0.0006 5 6 3.9495 -0.4502 0.0016 6 6 5.3153 -0.9915 0.0018 7 7 6.3447 -0.1450 -0.0043 8 6 7.5839 -0.5859 0.0014 9 6 7.8129 -1.9813 0.0024 10 6 9.1230 -2.5004 0.0032 11 1 9.3248 -3.4562 0.4637 12 6 10.1625 -1.7775 -0.5929 13 7 11.4064 -2.0568 -0.2983 14 14 9.7742 -0.4138 -1.8092 15 1 9.7594 0.8915 -1.1011 16 1 10.8108 -0.3887 -2.8721 17 1 8.4437 -0.6603 -2.4209 18 6 6.6902 -2.8411 0.0032 19 7 5.4854 -2.3134 0.0024 20 16 2.4735 -1.4059 -0.0075 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3633 0.8901 0.5137 24 1 1.8425 2.0965 0.0004 25 1 4.3560 1.6700 0.0002 26 1 8.4129 0.1064 0.0008 27 1 12.1270 -1.5554 -0.7112 28 1 6.8199 -3.9132 0.0045 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259755802.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:12 Heat of formation + Delta-G solvation = 39.185017 kcal Electronic energy + Delta-G solvation = -14431.687909 eV Core-core repulsion = 11958.793913 eV Total energy + Delta-G solvation = -2472.893997 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.18699 -38.69361 -36.25098 -34.27254 -33.86419 -32.24180 -28.95014 -26.26099 -25.17656 -24.26484 -23.28037 -20.24899 -19.90208 -18.63388 -17.58496 -17.32028 -16.61864 -15.74885 -15.58809 -15.10259 -14.77814 -14.60964 -14.19321 -14.05311 -13.68493 -13.36110 -13.08808 -13.00193 -12.81416 -12.47816 -12.13744 -11.73692 -11.57165 -11.45924 -11.39681 -10.44960 -9.87870 -9.36335 -9.20004 -9.09882 -6.69807 -0.38966 0.54322 0.63563 0.70979 1.19169 1.25787 1.30066 1.35941 1.85840 1.95505 2.49470 3.35630 3.39243 3.70350 4.05435 4.07387 4.46397 4.51367 4.54827 4.61092 4.81802 4.85988 4.96579 5.17413 5.18034 5.34137 5.43480 5.65354 5.69327 5.90445 6.02589 6.35739 6.62733 7.53788 7.82824 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.052198 B = 0.005708 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.290773 B = 4904.582226 C = 5278.631047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.233 4.233 3 C -0.147 4.147 4 C -0.128 4.128 5 C -0.146 4.146 6 C 0.186 3.814 7 N -0.476 5.476 8 C -0.009 4.009 9 C -0.021 4.021 10 C -0.413 4.413 11 H 0.091 0.909 12 C 0.059 3.941 13 N -0.793 5.793 14 Si 0.953 3.047 15 H -0.251 1.251 16 H -0.257 1.257 17 H -0.274 1.274 18 C 0.039 3.961 19 N -0.486 5.486 20 S 0.205 5.795 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.161 0.839 25 H 0.136 0.864 26 H 0.148 0.852 27 H 0.308 0.692 28 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.668 4.043 -1.461 13.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.353 4.353 3 C -0.178 4.178 4 C -0.161 4.161 5 C -0.265 4.265 6 C -0.072 4.072 7 N -0.188 5.188 8 C -0.180 4.180 9 C -0.028 4.028 10 C -0.441 4.441 11 H 0.109 0.891 12 C -0.163 4.163 13 N -0.415 5.415 14 Si 0.777 3.223 15 H -0.176 1.176 16 H -0.182 1.182 17 H -0.199 1.199 18 C -0.136 4.136 19 N -0.198 5.198 20 S 0.471 5.529 21 H 0.103 0.897 22 H 0.094 0.906 23 H 0.110 0.890 24 H 0.179 0.821 25 H 0.154 0.846 26 H 0.165 0.835 27 H 0.120 0.880 28 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -13.659 2.889 -1.470 14.039 hybrid contribution 1.967 1.531 -0.312 2.512 sum -11.693 4.421 -1.782 12.627 Atomic orbital electron populations 1.20396 0.85108 1.04163 1.03663 1.24553 1.02783 0.97351 1.10605 1.19997 0.91514 1.00470 1.05789 1.20765 0.97068 0.94557 1.03700 1.22679 0.93809 0.97208 1.12821 1.19621 0.90985 0.85454 1.11134 1.67627 1.00043 1.40817 1.10358 1.22982 0.93115 0.93923 1.08024 1.19482 0.95923 0.94021 0.93395 1.19487 0.89913 1.05867 1.28868 0.89101 1.26743 0.94012 0.98451 0.97134 1.69639 1.01225 1.36606 1.34048 0.85659 0.79003 0.78751 0.78916 1.17569 1.18200 1.19909 1.23345 0.86331 1.00306 1.03573 1.67780 1.27204 1.13554 1.11223 1.82863 0.92703 1.07633 1.69657 0.89731 0.90634 0.89033 0.82136 0.84630 0.83511 0.88017 0.81135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.29 10.31 71.24 0.73 -0.56 15 2 C -0.23 -6.25 6.28 24.68 0.15 -6.09 15 3 C -0.15 -4.22 10.00 21.10 0.21 -4.01 15 4 C -0.13 -4.67 9.96 21.76 0.22 -4.45 15 5 C -0.15 -6.05 6.46 24.19 0.16 -5.89 15 6 C 0.19 9.02 7.57 136.71 1.03 10.06 15 7 N -0.48 -23.82 9.97 -187.79 -1.87 -25.69 15 8 C -0.01 -0.45 8.47 85.52 0.72 0.28 15 9 C -0.02 -1.02 5.13 -21.06 -0.11 -1.13 15 10 C -0.41 -20.37 9.60 23.34 0.22 -20.15 15 11 H 0.09 4.60 8.06 -2.91 -0.02 4.57 15 12 C 0.06 2.78 5.42 85.25 0.46 3.24 15 13 N -0.79 -37.16 13.93 21.83 0.30 -36.85 15 14 Si 0.95 39.02 24.53 68.60 1.68 40.70 15 15 H -0.25 -9.83 6.70 99.48 0.67 -9.16 15 16 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 17 H -0.27 -12.47 6.85 99.48 0.68 -11.79 15 18 C 0.04 1.84 11.10 85.52 0.95 2.79 15 19 N -0.49 -23.29 10.08 -187.80 -1.89 -25.18 15 20 S 0.21 6.75 22.76 -56.49 -1.29 5.46 15 21 H 0.08 1.26 8.14 -2.39 -0.02 1.24 15 22 H 0.07 1.17 8.14 -2.39 -0.02 1.15 15 23 H 0.09 1.25 8.14 -2.39 -0.02 1.24 15 24 H 0.16 3.52 8.06 -2.91 -0.02 3.50 15 25 H 0.14 5.00 8.00 -2.91 -0.02 4.98 15 26 H 0.15 6.90 4.78 -2.91 -0.01 6.89 15 27 H 0.31 12.72 8.30 -92.70 -0.77 11.95 15 28 H 0.17 6.98 8.06 -2.91 -0.02 6.95 15 Total: -1.00 -57.59 261.89 2.82 -54.77 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 1.12 Total: 12.70 kcal Atomic # 6 Polarization: -30.68 SS G_CDS: 4.76 Total: -25.92 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -3.46 Total: -87.73 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 1.68 Total: 40.70 kcal Atomic # 16 Polarization: 6.75 SS G_CDS: -1.29 Total: 5.46 kcal Total: -57.59 2.82 -54.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259755802.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.954 kcal (2) G-P(sol) polarization free energy of solvation -57.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds