Wall clock time and date at job start Mon Mar 30 2020 05:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33836 * 125.89988 * 2 1 4 4 N 1.31201 * 115.83751 * 179.97438 * 3 2 1 5 5 C 1.30226 * 117.07163 * 359.97438 * 4 3 2 6 6 C 1.47873 * 125.46832 * 180.02562 * 5 4 3 7 7 C 1.40234 * 120.84148 * 179.69482 * 6 5 4 8 8 C 1.38448 * 119.39993 * 179.75328 * 7 6 5 9 9 N 1.31507 * 121.16980 * 0.53509 * 8 7 6 10 10 C 1.33657 * 121.84522 * 359.73868 * 9 8 7 11 11 C 1.41420 * 119.76799 * 179.97438 * 10 9 8 12 12 H 1.08007 * 119.99813 * 179.97438 * 11 10 9 13 13 C 1.40040 * 120.00535 * 359.97438 * 11 10 9 14 14 N 1.30736 * 119.99720 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00260 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46770 * 60.00150 * 15 13 11 17 17 H 1.48498 * 109.47003 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47194 * 300.00264 * 15 13 11 19 19 C 1.39534 * 120.84224 * 359.97438 * 6 5 4 20 20 S 1.76181 * 109.06220 * 359.75992 * 5 4 3 21 21 H 1.09002 * 109.47152 * 90.00202 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.00302 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.00283 * 1 2 3 24 24 H 1.08004 * 122.08333 * 359.97438 * 3 2 1 25 25 H 1.08001 * 120.30274 * 0.02562 * 7 6 5 26 26 H 1.07999 * 119.41770 * 180.30260 * 8 7 6 27 27 H 0.96994 * 119.99897 * 179.97438 * 14 13 11 28 28 H 1.07997 * 120.59692 * 0.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2918 1.0841 0.0000 4 7 3.5836 0.8549 0.0005 5 6 3.9646 -0.3904 0.0015 6 6 5.3672 -0.8586 0.0028 7 6 5.6679 -2.2283 0.0102 8 6 6.9918 -2.6335 0.0060 9 7 7.9720 -1.7568 0.0057 10 6 7.7407 -0.4404 0.0042 11 6 8.8282 0.4636 0.0045 12 1 8.6456 1.5281 0.0029 13 6 10.1420 -0.0214 0.0068 14 7 10.3631 -1.3099 0.0093 15 14 11.5784 1.1727 0.0065 16 1 11.5101 2.0295 1.2175 17 1 12.8540 0.4125 0.0099 18 1 11.5129 2.0255 -1.2075 19 6 6.4251 0.0513 0.0025 20 16 2.5406 -1.4277 0.0088 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 0.8900 0.5138 23 1 -0.3633 -0.8900 0.5139 24 1 1.8869 2.0854 -0.0004 25 1 4.8740 -2.9605 0.0147 26 1 7.2237 -3.6883 0.0067 27 1 11.2730 -1.6458 0.0105 28 1 6.2357 1.1145 0.0017 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259804806.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:22 Heat of formation + Delta-G solvation = 69.031779 kcal Electronic energy + Delta-G solvation = -14330.381017 eV Core-core repulsion = 11858.781273 eV Total energy + Delta-G solvation = -2471.599744 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.24643 -38.03322 -33.84834 -32.81019 -30.84587 -30.10168 -26.63751 -25.71847 -24.10063 -21.89858 -21.29468 -19.08037 -17.61148 -17.02704 -15.64267 -14.96937 -14.47545 -14.40226 -14.15533 -14.06470 -13.00738 -12.95077 -12.93157 -12.44565 -12.21222 -12.15125 -11.22883 -11.21928 -10.99355 -10.83747 -10.52323 -10.03783 -9.60598 -9.25213 -9.13698 -8.93662 -7.76682 -7.68818 -7.64229 -6.48332 -4.60054 0.75164 1.60861 2.03321 2.60577 2.70558 3.06387 3.08932 3.14213 3.56707 3.90802 4.54648 4.68955 5.02418 5.16671 5.42301 5.52205 5.73463 5.80801 5.91491 6.00648 6.30773 6.39536 6.62381 6.75269 7.03413 7.19679 7.38141 7.50583 7.80205 8.13261 8.16819 8.54538 8.81046 10.00517 10.23753 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.048098 B = 0.005267 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.005158 B = 5314.911579 C = 5881.769218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.245 4.245 3 C 0.040 3.960 4 N -0.476 5.476 5 C 0.159 3.841 6 C 0.012 3.988 7 C -0.301 4.301 8 C 0.130 3.870 9 N -0.479 5.479 10 C 0.249 3.751 11 C -0.422 4.422 12 H 0.087 0.913 13 C 0.067 3.933 14 N -0.712 5.712 15 Si 0.910 3.090 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.264 1.264 19 C -0.204 4.204 20 S 0.066 5.934 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.167 0.833 25 H 0.097 0.903 26 H 0.125 0.875 27 H 0.275 0.725 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.431 0.651 -0.009 11.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.366 4.366 3 C -0.112 4.112 4 N -0.189 5.189 5 C -0.115 4.115 6 C 0.002 3.998 7 C -0.327 4.327 8 C -0.035 4.035 9 N -0.192 5.192 10 C 0.125 3.875 11 C -0.453 4.453 12 H 0.105 0.895 13 C -0.159 4.159 14 N -0.333 5.333 15 Si 0.734 3.266 16 H -0.188 1.188 17 H -0.201 1.201 18 H -0.188 1.188 19 C -0.232 4.232 20 S 0.323 5.677 21 H 0.090 0.910 22 H 0.093 0.907 23 H 0.085 0.915 24 H 0.184 0.816 25 H 0.115 0.885 26 H 0.142 0.858 27 H 0.086 0.914 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.231 -0.452 0.004 10.241 hybrid contribution -0.744 1.568 -0.013 1.736 sum -10.975 1.116 -0.009 11.032 Atomic orbital electron populations 1.20131 0.87208 1.02888 1.02433 1.25819 1.01076 0.95438 1.14239 1.21538 0.87329 0.99683 1.02666 1.66552 1.15960 1.19069 1.17317 1.26265 0.97149 0.88901 0.99226 1.17742 0.85998 0.93951 1.02072 1.21237 0.97815 0.93022 1.20610 1.22412 0.88241 0.98859 0.93975 1.68730 1.32232 1.01700 1.16527 1.18586 0.90271 0.89635 0.89050 1.19653 0.89636 0.94061 1.41989 0.89525 1.26091 1.00533 0.95633 0.93636 1.70112 1.22046 1.13325 1.27779 0.86338 0.79454 0.80772 0.80027 1.18826 1.20142 1.18821 1.22011 0.92493 0.98534 1.10176 1.84830 1.00451 1.11721 1.70723 0.91014 0.90653 0.91481 0.81578 0.88457 0.85761 0.91367 0.86799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.41 36.01 0.37 -0.28 15 2 C -0.24 -3.49 6.59 -35.85 -0.24 -3.72 15 3 C 0.04 0.64 11.15 -19.37 -0.22 0.42 15 4 N -0.48 -9.48 10.22 -11.35 -0.12 -9.59 15 5 C 0.16 3.25 7.37 -14.29 -0.11 3.14 15 6 C 0.01 0.28 5.90 -104.72 -0.62 -0.34 15 7 C -0.30 -6.70 9.70 -38.75 -0.38 -7.07 15 8 C 0.13 3.08 11.16 -17.61 -0.20 2.88 15 9 N -0.48 -12.99 7.84 -11.22 -0.09 -13.08 15 10 C 0.25 6.77 6.55 -85.03 -0.56 6.21 15 11 C -0.42 -11.17 9.14 -37.70 -0.34 -11.51 15 12 H 0.09 2.14 7.85 -52.48 -0.41 1.73 15 13 C 0.07 1.68 5.50 -17.34 -0.10 1.58 15 14 N -0.71 -18.60 11.46 55.55 0.64 -17.97 15 15 Si 0.91 18.32 29.56 -169.99 -5.02 13.29 15 16 H -0.26 -5.24 7.11 56.52 0.40 -4.84 15 17 H -0.28 -5.41 7.11 56.52 0.40 -5.01 15 18 H -0.26 -5.24 7.11 56.52 0.40 -4.84 15 19 C -0.20 -5.14 9.50 -38.27 -0.36 -5.50 15 20 S 0.07 1.07 22.50 -107.50 -2.42 -1.34 15 21 H 0.07 0.62 8.14 -51.93 -0.42 0.19 15 22 H 0.07 0.61 8.14 -51.93 -0.42 0.18 15 23 H 0.07 0.60 8.14 -51.93 -0.42 0.17 15 24 H 0.17 2.11 8.06 -52.48 -0.42 1.68 15 25 H 0.10 1.90 7.41 -52.49 -0.39 1.51 15 26 H 0.12 2.57 8.06 -52.49 -0.42 2.14 15 27 H 0.28 6.50 8.29 -40.82 -0.34 6.16 15 28 H 0.11 2.79 7.90 -52.49 -0.41 2.37 15 LS Contribution 267.87 15.07 4.04 4.04 Total: -1.00 -29.20 267.87 -8.17 -37.37 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -2.46 Total: 1.47 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -2.73 Total: -14.19 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.43 Total: -40.63 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.02 Total: 13.29 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.42 Total: -1.34 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.20 -8.17 -37.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259804806.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.404 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds