Wall clock time and date at job start Mon Mar 30 2020 05:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00312 * 2 1 4 4 H 1.48505 * 109.47112 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46982 * 299.99985 * 3 2 1 6 6 H 1.48494 * 109.47120 * 60.00311 * 3 2 1 7 7 C 1.37877 * 119.99694 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99937 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.46942 * 180.02562 * 9 7 2 11 11 C 1.37889 * 119.55186 * 125.28519 * 10 9 7 12 12 C 1.40003 * 118.99145 * 180.29181 * 11 10 9 13 13 C 1.47768 * 120.92608 * 179.70322 * 12 11 10 14 14 C 1.35107 * 126.10692 * 179.71862 * 13 12 11 15 15 N 1.31374 * 114.22884 * 180.02562 * 14 13 12 16 16 C 1.29175 * 117.29340 * 0.02562 * 15 14 13 17 17 S 1.70949 * 110.36655 * 359.97438 * 16 15 14 18 18 C 1.40049 * 118.15096 * 359.43461 * 12 11 10 19 19 C 1.37845 * 118.99026 * 0.27255 * 18 12 11 20 20 N 1.31970 * 119.54714 * 304.99918 * 10 9 7 21 21 H 0.97004 * 119.99587 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47073 * 60.00167 * 9 7 2 23 23 H 1.08998 * 109.47015 * 299.99629 * 9 7 2 24 24 H 1.08002 * 120.49702 * 359.97438 * 11 10 9 25 25 H 1.08004 * 122.89049 * 359.97438 * 14 13 12 26 26 H 1.08006 * 124.81680 * 179.97438 * 16 15 14 27 27 H 1.07995 * 120.50646 * 180.24824 * 18 12 11 28 28 H 1.08002 * 119.54623 * 179.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8906 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2301 -3.6446 -0.0005 11 6 2.1454 -4.6118 0.9786 12 6 3.0650 -5.6674 0.9710 13 6 3.0174 -6.7234 2.0036 14 6 3.8453 -7.7874 2.0930 15 7 3.5922 -8.5838 3.1067 16 6 2.6068 -8.2650 3.8788 17 16 1.8701 -6.8205 3.3375 18 6 4.0276 -5.6979 -0.0457 19 6 4.0357 -4.6923 -0.9884 20 7 3.1535 -3.7114 -0.9410 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8902 23 1 0.6246 -2.5571 0.8897 24 1 1.3844 -4.5530 1.7427 25 1 4.6459 -7.9682 1.3910 26 1 2.2930 -8.8308 4.7436 27 1 4.7529 -6.4969 -0.0903 28 1 4.7743 -4.7067 -1.7762 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259807577.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:56 Heat of formation + Delta-G solvation = 71.734775 kcal Electronic energy + Delta-G solvation = -14260.340245 eV Core-core repulsion = 11788.857711 eV Total energy + Delta-G solvation = -2471.482533 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.03000 -39.23717 -33.89141 -33.03788 -31.42196 -29.19781 -27.64613 -25.76078 -23.73008 -22.81217 -21.50126 -19.62005 -18.24608 -16.56476 -16.32696 -15.52207 -15.10888 -14.72787 -14.61983 -14.34467 -14.01113 -13.44242 -12.94395 -12.64474 -12.15699 -11.79905 -11.44742 -11.16899 -10.78442 -10.63492 -10.46365 -9.85925 -9.83548 -9.44594 -9.25741 -8.75603 -8.49421 -8.42220 -8.24048 -6.04710 -4.05448 0.21653 1.18841 1.63048 1.66288 1.86660 2.82934 3.31385 3.38698 3.44658 4.17332 4.34077 4.49851 4.64203 4.94529 4.99510 5.12643 5.32173 5.34971 5.43751 5.65374 5.95367 6.03919 6.26955 6.37038 6.56800 7.17987 7.43262 7.48784 7.53520 7.92287 8.26438 8.73732 8.97949 9.57160 11.06615 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.034768 B = 0.005230 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.137174 B = 5352.058950 C = 5828.820701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.057 3.943 10 C 0.183 3.817 11 C -0.172 4.172 12 C 0.018 3.982 13 C -0.171 4.171 14 C 0.040 3.960 15 N -0.470 5.470 16 C 0.000 4.000 17 S 0.160 5.840 18 C -0.186 4.186 19 C 0.104 3.896 20 N -0.467 5.467 21 H 0.261 0.739 22 H 0.045 0.955 23 H 0.037 0.963 24 H 0.130 0.870 25 H 0.178 0.822 26 H 0.199 0.801 27 H 0.128 0.872 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.620 -14.806 5.540 16.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.538 4.538 8 H 0.079 0.921 9 C 0.020 3.980 10 C 0.047 3.953 11 C -0.194 4.194 12 C 0.008 3.992 13 C -0.293 4.293 14 C -0.113 4.113 15 N -0.183 5.183 16 C -0.296 4.296 17 S 0.415 5.585 18 C -0.208 4.208 19 C -0.054 4.054 20 N -0.177 5.177 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.147 0.853 25 H 0.195 0.805 26 H 0.216 0.784 27 H 0.145 0.855 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.922 -13.976 5.474 15.513 hybrid contribution 1.137 -0.011 0.146 1.146 sum 5.058 -13.987 5.621 15.900 Atomic orbital electron populations 1.69955 1.05989 1.26740 1.50990 1.24988 0.94907 0.99300 0.95311 0.86439 0.80136 0.83361 0.77535 1.19707 1.20922 1.21048 1.21012 0.93198 0.89390 1.50235 0.92105 1.18383 0.91816 0.89021 0.98803 1.22225 0.92445 0.93703 0.86960 1.22174 1.00213 0.95261 1.01722 1.18120 0.96109 0.92312 0.92698 1.24529 1.01793 1.01393 1.01554 1.22023 1.01262 0.90785 0.97268 1.66196 1.16535 1.30780 1.04755 1.28462 0.97074 0.99786 1.04294 1.84164 1.31633 1.22557 1.20136 1.21917 1.00349 1.01780 0.96756 1.22735 0.96358 0.89507 0.96793 1.67726 1.03025 1.22428 1.24487 0.92904 0.93740 0.94519 0.85260 0.80502 0.78394 0.85460 0.83147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 13.29 55.43 0.74 -25.59 15 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 15 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 15 4 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 7 C -0.50 -14.10 8.91 -34.44 -0.31 -14.41 15 8 H 0.06 1.74 7.68 -52.48 -0.40 1.34 15 9 C 0.06 1.46 5.37 -29.03 -0.16 1.30 15 10 C 0.18 4.02 6.12 -82.66 -0.51 3.51 15 11 C -0.17 -3.21 9.30 -39.05 -0.36 -3.57 15 12 C 0.02 0.29 5.91 -104.66 -0.62 -0.33 15 13 C -0.17 -2.36 6.45 -36.80 -0.24 -2.60 15 14 C 0.04 0.51 10.88 -18.86 -0.21 0.30 15 15 N -0.47 -5.93 10.52 -15.47 -0.16 -6.10 15 16 C 0.00 0.00 12.22 51.65 0.63 0.63 15 17 S 0.16 1.84 22.37 -107.50 -2.40 -0.56 15 18 C -0.19 -2.73 9.64 -39.05 -0.38 -3.10 15 19 C 0.10 1.72 11.17 -17.62 -0.20 1.53 15 20 N -0.47 -9.98 9.95 -9.59 -0.10 -10.07 15 21 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 22 H 0.04 1.21 8.14 -51.93 -0.42 0.79 15 23 H 0.04 0.94 7.86 -51.93 -0.41 0.54 15 24 H 0.13 2.24 7.37 -52.49 -0.39 1.85 15 25 H 0.18 1.84 7.10 -52.48 -0.37 1.47 15 26 H 0.20 1.30 8.06 -52.48 -0.42 0.88 15 27 H 0.13 1.41 6.99 -52.49 -0.37 1.04 15 28 H 0.15 1.97 8.06 -52.49 -0.42 1.55 15 LS Contribution 267.98 15.07 4.04 4.04 Total: -1.00 -31.70 267.98 -7.68 -39.38 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -2.34 Total: -2.59 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -2.43 Total: -15.26 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.48 Total: -41.76 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.40 Total: -0.56 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.70 -7.68 -39.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259807577.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.114 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds