Wall clock time and date at job start Mon Mar 30 2020 05:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00312 * 2 1 4 4 H 1.48505 * 109.47112 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46982 * 299.99985 * 3 2 1 6 6 H 1.48494 * 109.47120 * 60.00311 * 3 2 1 7 7 C 1.37877 * 119.99694 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99937 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99986 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.46942 * 180.02562 * 9 7 2 11 11 C 1.37889 * 119.55186 * 125.28519 * 10 9 7 12 12 C 1.40003 * 118.99145 * 180.29181 * 11 10 9 13 13 C 1.47768 * 120.92608 * 179.70322 * 12 11 10 14 14 C 1.35107 * 126.10692 * 179.71862 * 13 12 11 15 15 N 1.31374 * 114.22884 * 180.02562 * 14 13 12 16 16 C 1.29175 * 117.29340 * 0.02562 * 15 14 13 17 17 S 1.70949 * 110.36655 * 359.97438 * 16 15 14 18 18 C 1.40049 * 118.15096 * 359.43461 * 12 11 10 19 19 C 1.37845 * 118.99026 * 0.27255 * 18 12 11 20 20 N 1.31970 * 119.54714 * 304.99918 * 10 9 7 21 21 H 0.97004 * 119.99587 * 359.97438 * 1 2 3 22 22 H 1.08993 * 109.47073 * 60.00167 * 9 7 2 23 23 H 1.08998 * 109.47015 * 299.99629 * 9 7 2 24 24 H 1.08002 * 120.49702 * 359.97438 * 11 10 9 25 25 H 1.08004 * 122.89049 * 359.97438 * 14 13 12 26 26 H 1.08006 * 124.81680 * 179.97438 * 16 15 14 27 27 H 1.07995 * 120.50646 * 180.24824 * 18 12 11 28 28 H 1.08002 * 119.54623 * 179.97438 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8906 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2301 -3.6446 -0.0005 11 6 2.1454 -4.6118 0.9786 12 6 3.0650 -5.6674 0.9710 13 6 3.0174 -6.7234 2.0036 14 6 3.8453 -7.7874 2.0930 15 7 3.5922 -8.5838 3.1067 16 6 2.6068 -8.2650 3.8788 17 16 1.8701 -6.8205 3.3375 18 6 4.0276 -5.6979 -0.0457 19 6 4.0357 -4.6923 -0.9884 20 7 3.1535 -3.7114 -0.9410 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8902 23 1 0.6246 -2.5571 0.8897 24 1 1.3844 -4.5530 1.7427 25 1 4.6459 -7.9682 1.3910 26 1 2.2930 -8.8308 4.7436 27 1 4.7529 -6.4969 -0.0903 28 1 4.7743 -4.7067 -1.7762 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259807577.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:56 Heat of formation + Delta-G solvation = 51.347708 kcal Electronic energy + Delta-G solvation = -14261.224294 eV Core-core repulsion = 11788.857711 eV Total energy + Delta-G solvation = -2472.366583 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.24030 -40.35571 -35.64626 -34.55010 -33.13170 -30.29923 -29.44940 -26.80945 -25.55049 -24.11445 -22.91774 -20.69179 -19.31865 -18.49386 -17.68431 -16.89970 -16.69578 -16.15159 -15.71359 -15.61748 -14.99283 -14.88818 -14.34892 -14.04033 -13.97443 -13.44288 -13.10144 -12.68110 -12.63397 -12.26658 -11.78625 -11.68975 -11.49782 -10.77398 -10.63938 -10.17950 -10.17143 -9.82685 -9.50937 -8.21430 -6.30356 -0.78770 0.27760 0.28345 0.67519 0.73851 1.38972 1.39996 1.53451 1.86010 2.40608 2.97847 3.12309 3.29005 3.56800 3.61498 3.87350 4.05871 4.24345 4.34869 4.44422 4.70724 4.86495 4.95352 5.13048 5.21848 5.27711 5.45336 5.72283 5.82442 6.15979 6.62503 6.78273 7.28697 7.37278 8.90242 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.034768 B = 0.005230 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.137174 B = 5352.058950 C = 5828.820701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.051 0.949 9 C 0.065 3.935 10 C 0.150 3.850 11 C -0.184 4.184 12 C 0.028 3.972 13 C -0.211 4.211 14 C 0.059 3.941 15 N -0.495 5.495 16 C 0.027 3.973 17 S 0.157 5.843 18 C -0.168 4.168 19 C 0.099 3.901 20 N -0.511 5.511 21 H 0.266 0.734 22 H 0.011 0.989 23 H 0.021 0.979 24 H 0.129 0.871 25 H 0.200 0.800 26 H 0.238 0.762 27 H 0.174 0.826 28 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.590 -16.615 6.468 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.554 4.554 8 H 0.069 0.931 9 C 0.027 3.973 10 C 0.015 3.985 11 C -0.205 4.205 12 C 0.018 3.982 13 C -0.332 4.332 14 C -0.095 4.095 15 N -0.208 5.208 16 C -0.268 4.268 17 S 0.413 5.587 18 C -0.189 4.189 19 C -0.059 4.059 20 N -0.221 5.221 21 H 0.075 0.925 22 H 0.029 0.971 23 H 0.039 0.961 24 H 0.147 0.853 25 H 0.217 0.783 26 H 0.254 0.746 27 H 0.192 0.808 28 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 5.880 -15.783 6.406 18.020 hybrid contribution 0.562 0.327 -0.054 0.652 sum 6.442 -15.457 6.352 17.910 Atomic orbital electron populations 1.70067 1.07454 1.27863 1.51664 1.25874 0.95826 1.02964 0.94779 0.85383 0.78729 0.78821 0.78006 1.19385 1.20171 1.19896 1.21261 0.92911 0.90977 1.50278 0.93073 1.18063 0.92273 0.90499 0.96432 1.21589 0.93345 0.94077 0.89478 1.22065 1.01462 0.95788 1.01169 1.18277 0.94988 0.91615 0.93317 1.24386 1.04111 1.02042 1.02637 1.22404 1.00632 0.89526 0.96967 1.66318 1.17714 1.31245 1.05520 1.29193 0.95118 0.98502 1.03984 1.84276 1.31433 1.23379 1.19611 1.22386 0.99940 1.01776 0.94794 1.23341 0.95716 0.88715 0.98099 1.67543 1.04302 1.25119 1.25173 0.92542 0.97064 0.96077 0.85263 0.78313 0.74572 0.80817 0.79628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.45 13.29 21.45 0.28 -56.16 15 2 C 0.00 0.19 5.46 84.66 0.46 0.66 15 3 Si 0.97 45.46 29.54 68.60 2.03 47.49 15 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 15 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 7 C -0.52 -30.44 8.91 25.60 0.23 -30.22 15 8 H 0.05 3.04 7.68 -2.91 -0.02 3.02 15 9 C 0.06 3.56 5.37 29.10 0.16 3.71 15 10 C 0.15 6.94 6.12 42.46 0.26 7.20 15 11 C -0.18 -7.03 9.30 22.62 0.21 -6.81 15 12 C 0.03 0.87 5.91 -19.89 -0.12 0.75 15 13 C -0.21 -5.33 6.45 24.07 0.16 -5.17 15 14 C 0.06 1.27 10.88 84.04 0.91 2.19 15 15 N -0.49 -10.67 10.52 -202.85 -2.13 -12.81 15 16 C 0.03 0.47 12.22 130.63 1.60 2.06 15 17 S 0.16 3.34 22.37 -56.49 -1.26 2.08 15 18 C -0.17 -4.45 9.64 22.62 0.22 -4.23 15 19 C 0.10 3.12 11.17 84.57 0.94 4.07 15 20 N -0.51 -22.31 9.95 -184.25 -1.83 -24.14 15 21 H 0.27 15.04 8.31 -92.71 -0.77 14.27 15 22 H 0.01 0.67 8.14 -2.39 -0.02 0.65 15 23 H 0.02 1.18 7.86 -2.39 -0.02 1.16 15 24 H 0.13 4.72 7.37 -2.91 -0.02 4.70 15 25 H 0.20 3.19 7.10 -2.91 -0.02 3.17 15 26 H 0.24 1.99 8.06 -2.91 -0.02 1.97 15 27 H 0.17 2.94 6.99 -2.91 -0.02 2.92 15 28 H 0.19 4.34 8.06 -2.91 -0.02 4.31 15 Total: -1.00 -71.70 267.98 3.29 -68.41 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: 1.18 Total: 0.94 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 5.03 Total: -25.79 kcal Atomic # 7 Polarization: -89.43 SS G_CDS: -3.68 Total: -93.12 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -1.26 Total: 2.08 kcal Total: -71.70 3.29 -68.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259807577.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.760 kcal (2) G-P(sol) polarization free energy of solvation -71.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds