Wall clock time and date at job start Mon Mar 30 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31360 * 1 3 3 Si 1.86798 * 120.00284 * 2 1 4 4 H 1.48504 * 109.47358 * 240.00173 * 3 2 1 5 5 H 1.48507 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47317 * 119.99987 * 3 2 1 7 7 C 1.38886 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00527 * 179.97438 * 7 2 1 9 9 N 1.37455 * 119.99675 * 359.97438 * 7 2 1 10 10 C 1.36863 * 126.42408 * 359.68813 * 9 7 2 11 11 N 1.30993 * 108.91748 * 180.74715 * 10 9 7 12 12 C 1.32933 * 108.87472 * 0.32781 * 11 10 9 13 13 C 1.36025 * 126.42466 * 180.02562 * 9 7 2 14 14 C 1.50176 * 130.38090 * 357.31513 * 13 9 7 15 15 C 1.52665 * 111.45675 * 149.06806 * 14 13 9 16 16 C 1.52041 * 111.31494 * 44.36046 * 15 14 13 17 17 C 1.33209 * 124.94636 * 147.79067 * 16 15 14 18 18 S 1.75578 * 110.78933 * 178.53495 * 17 16 15 19 19 C 1.75742 * 91.18938 * 0.33215 * 18 17 16 20 20 C 1.33847 * 109.91518 * 0.51423 * 19 18 17 21 21 H 0.97001 * 119.99737 * 0.02562 * 1 2 3 22 22 H 1.07998 * 125.54003 * 0.75280 * 10 9 7 23 23 H 1.09005 * 109.08338 * 269.57703 * 14 13 9 24 24 H 1.08999 * 109.08375 * 28.62751 * 14 13 9 25 25 H 1.09005 * 109.11078 * 164.82717 * 15 14 13 26 26 H 1.08994 * 109.11418 * 283.94382 * 15 14 13 27 27 H 1.08005 * 124.60727 * 358.55518 * 17 16 15 28 28 H 1.07998 * 125.04102 * 180.51157 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.1014 1.6964 -1.2125 5 1 1.2827 2.7465 0.0006 6 1 3.1015 1.6963 1.2125 7 6 2.0081 -1.2028 -0.0005 8 1 3.0880 -1.2028 -0.0010 9 7 1.3208 -2.3931 -0.0005 10 6 -0.0393 -2.5463 0.0059 11 7 -0.3226 -3.8251 0.0198 12 6 0.8125 -4.5170 0.0298 13 6 1.8648 -3.6399 -0.0005 14 6 3.3012 -4.0746 -0.0541 15 6 3.5151 -5.3889 0.6925 16 6 2.4242 -6.3955 0.3631 17 6 2.5931 -7.7160 0.3171 18 16 1.0806 -8.5250 -0.0577 19 6 0.2384 -6.9855 -0.1529 20 6 1.0940 -5.9826 0.0787 21 1 -0.4850 0.8401 -0.0004 22 1 -0.7614 -1.7433 0.0005 23 1 3.5957 -4.2043 -1.0956 24 1 3.9241 -3.3032 0.3987 25 1 4.4821 -5.8060 0.4110 26 1 3.5088 -5.1953 1.7650 27 1 3.5328 -8.2206 0.4875 28 1 -0.8135 -6.8663 -0.3665 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259816074.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:37 Heat of formation + Delta-G solvation = 76.775110 kcal Electronic energy + Delta-G solvation = -15081.160313 eV Core-core repulsion = 12609.896345 eV Total energy + Delta-G solvation = -2471.263968 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.71027 -37.65524 -34.10809 -32.98059 -30.95282 -29.72195 -26.32845 -25.41447 -24.18448 -21.68688 -20.13153 -19.68059 -17.47190 -16.97147 -16.82316 -15.40763 -14.73743 -14.55504 -13.79426 -13.36316 -13.30270 -12.71205 -12.41549 -12.28319 -12.20584 -11.62233 -11.41404 -11.38881 -11.08909 -10.80988 -10.70393 -10.52865 -10.26119 -9.90954 -8.80115 -8.52676 -8.21551 -7.88279 -6.90040 -6.46338 -4.64498 1.54488 2.16929 2.45107 2.74712 2.92902 2.97100 2.97510 3.68067 3.72738 4.73455 4.79969 4.88400 5.24173 5.40562 5.54515 5.76431 5.82313 5.90130 6.16284 6.32576 6.35997 6.52085 6.60312 6.72020 6.83626 6.93571 7.04872 7.33169 7.49662 8.08107 8.38934 8.63472 9.33925 9.70021 10.08313 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.049912 B = 0.006233 C = 0.005587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.857363 B = 4491.100781 C = 5010.054205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.043 3.957 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.332 4.332 8 H 0.111 0.889 9 N -0.249 5.249 10 C 0.131 3.869 11 N -0.509 5.509 12 C 0.004 3.996 13 C -0.093 4.093 14 C -0.018 4.018 15 C -0.046 4.046 16 C -0.083 4.083 17 C -0.222 4.222 18 S 0.047 5.953 19 C -0.215 4.215 20 C 0.022 3.978 21 H 0.285 0.715 22 H 0.230 0.770 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.157 0.843 28 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.890 -6.606 0.442 8.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.167 4.167 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.190 1.190 7 C -0.462 4.462 8 H 0.128 0.872 9 N 0.089 4.911 10 C -0.146 4.146 11 N -0.227 5.227 12 C -0.134 4.134 13 C -0.220 4.220 14 C -0.057 4.057 15 C -0.086 4.086 16 C -0.097 4.097 17 C -0.357 4.357 18 S 0.310 5.690 19 C -0.351 4.351 20 C 0.010 3.990 21 H 0.096 0.904 22 H 0.246 0.754 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.174 0.826 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.486 -8.082 0.253 9.247 hybrid contribution 1.422 2.575 0.146 2.945 sum 5.909 -5.507 0.399 8.087 Atomic orbital electron populations 1.69495 1.06551 1.29262 1.42082 1.25593 0.95768 1.00995 0.94318 0.85575 0.78886 0.78312 0.79623 1.19039 1.19939 1.19041 1.20000 0.93023 0.81485 1.51647 0.87155 1.41324 1.07044 1.03905 1.38779 1.26566 0.83945 0.93763 1.10324 1.69592 1.27828 1.03233 1.22050 1.18080 0.89634 0.89779 1.15907 1.20654 0.95504 0.85514 1.20335 1.19297 0.91232 0.95344 0.99791 1.20278 0.95005 0.92723 1.00609 1.20003 0.95232 0.93282 1.01201 1.24911 1.01459 0.96732 1.12577 1.83748 1.01269 1.10351 1.73595 1.24979 1.03473 0.93403 1.13211 1.17689 0.91394 0.91372 0.98570 0.90359 0.75430 0.92090 0.91533 0.90876 0.90720 0.82576 0.82133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.95 10.15 55.49 0.56 -20.39 15 2 C 0.04 1.02 5.48 -17.51 -0.10 0.92 15 3 Si 0.95 18.05 29.55 -169.99 -5.02 13.03 15 4 H -0.27 -4.95 7.11 56.52 0.40 -4.55 15 5 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 6 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 7 C -0.33 -8.38 10.06 -14.79 -0.15 -8.53 15 8 H 0.11 2.57 7.43 -52.49 -0.39 2.18 15 9 N -0.25 -6.62 2.91 -58.59 -0.17 -6.79 15 10 C 0.13 3.61 11.49 -88.28 -1.01 2.60 15 11 N -0.51 -13.84 11.25 -10.47 -0.12 -13.96 15 12 C 0.00 0.10 7.26 -83.21 -0.60 -0.51 15 13 C -0.09 -2.28 6.74 -81.43 -0.55 -2.83 15 14 C -0.02 -0.35 5.98 -28.31 -0.17 -0.52 15 15 C -0.05 -0.75 6.10 -27.39 -0.17 -0.92 15 16 C -0.08 -1.51 5.76 -104.21 -0.60 -2.11 15 17 C -0.22 -3.42 10.99 28.98 0.32 -3.10 15 18 S 0.05 0.72 23.31 -107.50 -2.51 -1.79 15 19 C -0.22 -4.13 11.16 29.19 0.33 -3.80 15 20 C 0.02 0.47 5.90 -105.32 -0.62 -0.15 15 21 H 0.29 6.49 8.31 -40.82 -0.34 6.15 15 22 H 0.23 6.27 5.47 -52.49 -0.29 5.98 15 23 H 0.06 1.12 8.14 -51.93 -0.42 0.70 15 24 H 0.07 1.20 7.73 -51.93 -0.40 0.80 15 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 15 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 27 H 0.16 1.89 8.06 -52.48 -0.42 1.47 15 28 H 0.16 3.02 8.06 -52.49 -0.42 2.60 15 LS Contribution 254.88 15.07 3.84 3.84 Total: -1.00 -28.60 254.88 -9.07 -37.66 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -2.33 Total: 7.35 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -3.33 Total: -18.96 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.28 Total: -41.14 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.02 Total: 13.03 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.51 Total: -1.79 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.60 -9.07 -37.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259816074.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.436 kcal (2) G-P(sol) polarization free energy of solvation -28.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds