Wall clock time and date at job start Mon Mar 30 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31360 * 1 3 3 Si 1.86798 * 120.00284 * 2 1 4 4 H 1.48504 * 109.47358 * 240.00173 * 3 2 1 5 5 H 1.48507 * 109.47271 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47317 * 119.99987 * 3 2 1 7 7 C 1.38886 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00527 * 179.97438 * 7 2 1 9 9 N 1.37455 * 119.99675 * 359.97438 * 7 2 1 10 10 C 1.36863 * 126.42408 * 359.68813 * 9 7 2 11 11 N 1.30993 * 108.91748 * 180.74715 * 10 9 7 12 12 C 1.32933 * 108.87472 * 0.32781 * 11 10 9 13 13 C 1.36025 * 126.42466 * 180.02562 * 9 7 2 14 14 C 1.50176 * 130.38090 * 357.31513 * 13 9 7 15 15 C 1.52665 * 111.45675 * 149.06806 * 14 13 9 16 16 C 1.52041 * 111.31494 * 44.36046 * 15 14 13 17 17 C 1.33209 * 124.94636 * 147.79067 * 16 15 14 18 18 S 1.75578 * 110.78933 * 178.53495 * 17 16 15 19 19 C 1.75742 * 91.18938 * 0.33215 * 18 17 16 20 20 C 1.33847 * 109.91518 * 0.51423 * 19 18 17 21 21 H 0.97001 * 119.99737 * 0.02562 * 1 2 3 22 22 H 1.07998 * 125.54003 * 0.75280 * 10 9 7 23 23 H 1.09005 * 109.08338 * 269.57703 * 14 13 9 24 24 H 1.08999 * 109.08375 * 28.62751 * 14 13 9 25 25 H 1.09005 * 109.11078 * 164.82717 * 15 14 13 26 26 H 1.08994 * 109.11418 * 283.94382 * 15 14 13 27 27 H 1.08005 * 124.60727 * 358.55518 * 17 16 15 28 28 H 1.07998 * 125.04102 * 180.51157 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.1014 1.6964 -1.2125 5 1 1.2827 2.7465 0.0006 6 1 3.1015 1.6963 1.2125 7 6 2.0081 -1.2028 -0.0005 8 1 3.0880 -1.2028 -0.0010 9 7 1.3208 -2.3931 -0.0005 10 6 -0.0393 -2.5463 0.0059 11 7 -0.3226 -3.8251 0.0198 12 6 0.8125 -4.5170 0.0298 13 6 1.8648 -3.6399 -0.0005 14 6 3.3012 -4.0746 -0.0541 15 6 3.5151 -5.3889 0.6925 16 6 2.4242 -6.3955 0.3631 17 6 2.5931 -7.7160 0.3171 18 16 1.0806 -8.5250 -0.0577 19 6 0.2384 -6.9855 -0.1529 20 6 1.0940 -5.9826 0.0787 21 1 -0.4850 0.8401 -0.0004 22 1 -0.7614 -1.7433 0.0005 23 1 3.5957 -4.2043 -1.0956 24 1 3.9241 -3.3032 0.3987 25 1 4.4821 -5.8060 0.4110 26 1 3.5088 -5.1953 1.7650 27 1 3.5328 -8.2206 0.4875 28 1 -0.8135 -6.8663 -0.3665 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259816074.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:37 Heat of formation + Delta-G solvation = 61.834381 kcal Electronic energy + Delta-G solvation = -15081.808192 eV Core-core repulsion = 12609.896345 eV Total energy + Delta-G solvation = -2471.911847 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.56858 -39.09758 -35.96608 -34.52021 -32.78464 -31.22739 -28.00118 -27.24444 -25.65910 -23.32821 -21.96471 -21.30245 -19.28401 -18.46274 -18.20510 -17.25827 -16.27266 -16.18314 -15.35041 -14.98946 -14.94331 -14.36988 -13.90149 -13.83452 -13.57718 -13.26922 -13.11159 -12.97775 -12.51826 -12.32228 -12.15323 -12.04779 -11.65800 -11.58252 -10.60635 -10.47279 -9.75282 -9.25949 -8.72046 -8.21733 -6.58385 0.16110 0.86285 1.10894 1.17248 1.36535 1.49343 1.53150 1.93461 2.08380 2.91176 2.95164 3.02256 3.88096 4.02614 4.12443 4.31172 4.37870 4.60419 4.76426 4.84466 4.91405 4.97896 5.00108 5.13670 5.18617 5.34997 5.41075 5.57556 5.83942 6.22772 6.46857 6.74584 7.40999 7.75055 8.28447 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.049912 B = 0.006233 C = 0.005587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.857363 B = 4491.100781 C = 5010.054205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C -0.001 4.001 3 Si 1.030 2.970 4 H -0.256 1.256 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.366 4.366 8 H 0.126 0.874 9 N -0.260 5.260 10 C 0.091 3.909 11 N -0.537 5.537 12 C -0.019 4.019 13 C -0.109 4.109 14 C -0.018 4.018 15 C -0.039 4.039 16 C -0.111 4.111 17 C -0.202 4.202 18 S 0.122 5.878 19 C -0.236 4.236 20 C -0.015 4.015 21 H 0.291 0.709 22 H 0.219 0.781 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.118 0.882 26 H 0.074 0.926 27 H 0.201 0.799 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.758 -7.982 0.620 11.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.206 4.206 3 Si 0.848 3.152 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.494 4.494 8 H 0.144 0.856 9 N 0.078 4.922 10 C -0.185 4.185 11 N -0.256 5.256 12 C -0.156 4.156 13 C -0.236 4.236 14 C -0.056 4.056 15 C -0.078 4.078 16 C -0.125 4.125 17 C -0.336 4.336 18 S 0.386 5.614 19 C -0.372 4.372 20 C -0.028 4.028 21 H 0.102 0.898 22 H 0.235 0.765 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.137 0.863 26 H 0.093 0.907 27 H 0.218 0.782 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.347 -9.490 0.431 12.009 hybrid contribution 0.441 2.828 0.066 2.862 sum 7.788 -6.662 0.497 10.261 Atomic orbital electron populations 1.69599 1.08257 1.30524 1.41983 1.26800 0.96553 1.04472 0.92821 0.84462 0.77537 0.73060 0.80138 1.18027 1.19427 1.17962 1.20588 0.93991 0.81780 1.53049 0.85638 1.41597 1.06834 1.05158 1.38610 1.26434 0.84873 0.93933 1.13303 1.69523 1.29413 1.03522 1.23101 1.18873 0.89236 0.92339 1.15174 1.21631 0.98106 0.84650 1.19205 1.19495 0.87844 0.97363 1.00939 1.20305 0.96552 0.90818 1.00167 1.20061 0.94101 0.94827 1.03467 1.25434 1.03107 0.95794 1.09274 1.83494 0.99882 1.06380 1.71608 1.25196 1.03443 0.96145 1.12444 1.17959 0.93969 0.89700 1.01213 0.89754 0.76544 0.91366 0.90617 0.86346 0.90722 0.78200 0.83289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.06 10.15 21.65 0.22 -44.84 15 2 C 0.00 -0.02 5.48 84.92 0.47 0.44 15 3 Si 1.03 36.54 29.55 68.60 2.03 38.56 15 4 H -0.26 -8.66 7.11 99.48 0.71 -7.95 15 5 H -0.27 -9.26 7.11 99.48 0.71 -8.56 15 6 H -0.26 -8.62 7.11 99.48 0.71 -7.91 15 7 C -0.37 -18.88 10.06 83.97 0.85 -18.04 15 8 H 0.13 5.85 7.43 -2.91 -0.02 5.83 15 9 N -0.26 -14.44 2.91 -339.29 -0.99 -15.42 15 10 C 0.09 5.33 11.49 179.53 2.06 7.40 15 11 N -0.54 -31.06 11.25 -187.05 -2.10 -33.16 15 12 C -0.02 -0.97 7.26 41.68 0.30 -0.67 15 13 C -0.11 -5.51 6.74 41.46 0.28 -5.23 15 14 C -0.02 -0.67 5.98 29.57 0.18 -0.49 15 15 C -0.04 -1.15 6.10 30.17 0.18 -0.97 15 16 C -0.11 -3.77 5.76 -19.60 -0.11 -3.88 15 17 C -0.20 -5.28 10.99 66.69 0.73 -4.55 15 18 S 0.12 3.32 23.31 -56.49 -1.32 2.00 15 19 C -0.24 -9.02 11.16 66.82 0.75 -8.27 15 20 C -0.02 -0.67 5.90 -20.32 -0.12 -0.79 15 21 H 0.29 13.67 8.31 -92.71 -0.77 12.90 15 22 H 0.22 12.92 5.47 -2.91 -0.02 12.90 15 23 H 0.07 2.42 8.14 -2.38 -0.02 2.40 15 24 H 0.08 2.64 7.73 -2.39 -0.02 2.62 15 25 H 0.12 2.44 8.14 -2.38 -0.02 2.42 15 26 H 0.07 2.20 8.14 -2.39 -0.02 2.18 15 27 H 0.20 3.46 8.06 -2.91 -0.02 3.44 15 28 H 0.15 5.82 8.06 -2.91 -0.02 5.80 15 Total: -1.00 -66.43 254.88 4.59 -61.84 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 1.19 Total: 26.07 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 5.56 Total: -35.06 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -2.87 Total: -93.42 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.56 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.32 Total: 2.00 kcal Total: -66.43 4.59 -61.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259816074.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.673 kcal (2) G-P(sol) polarization free energy of solvation -66.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds