Wall clock time and date at job start Mon Mar 30 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38666 * 119.65853 * 2 1 4 4 C 1.37893 * 120.15278 * 180.25377 * 3 2 1 5 5 C 1.39143 * 119.66657 * 359.45613 * 4 3 2 6 6 C 1.40272 * 120.34102 * 0.54094 * 5 4 3 7 7 C 1.37840 * 119.66625 * 179.97438 * 2 1 3 8 8 O 1.34891 * 108.49783 * 179.75824 * 6 5 4 9 9 C 1.34553 * 111.60617 * 0.02562 * 8 6 5 10 10 C 1.46380 * 125.57222 * 179.97438 * 9 8 6 11 11 O 1.21647 * 120.00485 * 174.57920 * 10 9 8 12 12 O 1.34994 * 119.99380 * 354.57489 * 10 9 8 13 13 C 1.40581 * 108.86549 * 359.97438 * 9 8 6 14 14 C 1.40008 * 127.40572 * 180.02562 * 13 9 8 15 15 H 1.08002 * 119.99906 * 320.37078 * 14 13 9 16 16 C 1.40605 * 120.00208 * 140.36872 * 14 13 9 17 17 N 1.30466 * 120.00349 * 156.54313 * 16 14 13 18 18 Si 1.86805 * 119.99807 * 336.53702 * 16 14 13 19 19 H 1.48501 * 109.47086 * 95.34828 * 18 16 14 20 20 H 1.48500 * 109.47033 * 215.34666 * 18 16 14 21 21 H 1.48497 * 109.46942 * 335.34752 * 18 16 14 22 22 H 1.09006 * 109.46650 * 90.00019 * 1 2 3 23 23 H 1.08997 * 109.46576 * 209.99713 * 1 2 3 24 24 H 1.08998 * 109.47247 * 329.99930 * 1 2 3 25 25 H 1.08001 * 119.92755 * 359.97438 * 3 2 1 26 26 H 1.07998 * 120.16852 * 179.72739 * 4 3 2 27 27 H 1.07997 * 119.97098 * 359.97438 * 7 2 1 28 28 H 0.96705 * 113.99645 * 180.02562 * 12 10 9 29 29 H 0.96998 * 120.00226 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1932 1.2050 0.0000 4 6 3.5721 1.2169 -0.0053 5 6 4.2712 0.0139 0.0009 6 6 3.5806 -1.2070 0.0010 7 6 2.1893 -1.1977 0.0005 8 8 4.4833 -2.2094 0.0021 9 6 5.7444 -1.7404 0.0033 10 6 6.9576 -2.5595 0.0053 11 8 8.0487 -2.0308 -0.0932 12 8 6.8654 -3.9017 0.1165 13 6 5.7068 -0.3351 0.0024 14 6 6.7957 0.5449 0.0027 15 1 7.6681 0.3243 0.6001 16 6 6.7538 1.7157 -0.7747 17 7 7.5025 2.7362 -0.4582 18 14 5.6260 1.8101 -2.2609 19 1 4.3468 2.4558 -1.8714 20 1 6.2794 2.6098 -3.3280 21 1 5.3555 0.4396 -2.7647 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3632 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6465 2.1364 -0.0004 26 1 4.1067 2.1552 -0.0097 27 1 1.6434 -2.1296 0.0014 28 1 7.7188 -4.3565 0.1087 29 1 7.4733 3.5440 -0.9943 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259819486.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:02 Heat of formation + Delta-G solvation = -78.838507 kcal Electronic energy + Delta-G solvation = -17381.322411 eV Core-core repulsion = 14428.264908 eV Total energy + Delta-G solvation = -2953.057503 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.02110 -38.68096 -37.35615 -35.05940 -34.31010 -32.39034 -30.56106 -29.73374 -26.43681 -26.15167 -23.15188 -21.74119 -20.55762 -19.35620 -17.81807 -17.30550 -16.22183 -16.05214 -15.29497 -15.03830 -14.58655 -14.18285 -14.03373 -13.32731 -13.25311 -13.18736 -12.68103 -12.28145 -11.90063 -11.72712 -11.56605 -11.36129 -10.97949 -10.76231 -10.56535 -10.45642 -10.05053 -9.65648 -9.43485 -8.74478 -7.85016 -7.37356 -7.27536 -4.75788 1.40604 2.01646 2.57407 2.93528 3.00095 3.13538 3.69715 3.74456 3.98719 4.28016 4.40932 4.76563 5.22847 5.35046 5.50589 5.61209 5.74840 5.86465 5.97588 6.03660 6.16162 6.45786 6.57324 6.74988 6.89599 7.01126 7.14234 7.23298 7.37885 7.43688 8.00377 8.04399 8.34216 8.44681 9.12257 9.63782 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.017305 B = 0.012208 C = 0.007742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.604553 B = 2293.046114 C = 3615.843081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.056 4.056 3 C -0.175 4.175 4 C -0.049 4.049 5 C -0.168 4.168 6 C 0.106 3.894 7 C -0.148 4.148 8 O -0.193 6.193 9 C -0.241 4.241 10 C 0.548 3.452 11 O -0.529 6.529 12 O -0.522 6.522 13 C 0.093 3.907 14 C -0.374 4.374 15 H 0.115 0.885 16 C 0.089 3.911 17 N -0.760 5.760 18 Si 0.888 3.112 19 H -0.244 1.244 20 H -0.275 1.275 21 H -0.245 1.245 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.119 0.881 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.392 0.608 29 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.334 -1.274 -1.095 9.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.056 4.056 3 C -0.193 4.193 4 C -0.067 4.067 5 C -0.170 4.170 6 C 0.055 3.945 7 C -0.166 4.166 8 O -0.097 6.097 9 C -0.287 4.287 10 C 0.402 3.598 11 O -0.424 6.424 12 O -0.332 6.332 13 C 0.088 3.912 14 C -0.399 4.399 15 H 0.132 0.868 16 C -0.137 4.137 17 N -0.383 5.383 18 Si 0.711 3.289 19 H -0.169 1.169 20 H -0.200 1.200 21 H -0.168 1.168 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.137 0.863 26 H 0.142 0.858 27 H 0.140 0.860 28 H 0.246 0.754 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.340 -0.967 -1.119 9.456 hybrid contribution 0.331 -0.037 -0.560 0.652 sum -9.009 -1.004 -1.679 9.219 Atomic orbital electron populations 1.20726 0.91157 1.02437 1.02008 1.19455 0.95385 0.92114 0.98695 1.20638 0.93480 0.97074 1.08156 1.20652 0.93634 0.96794 0.95631 1.20177 0.94573 0.93529 1.08689 1.19625 0.90848 0.86627 0.97355 1.19596 0.88743 0.98137 1.10159 1.83672 1.14107 1.32708 1.79197 1.19972 0.79814 0.90345 1.38561 1.18616 0.86820 0.79247 0.75144 1.90886 1.27196 1.73198 1.51115 1.85120 1.38821 1.21711 1.87530 1.18637 0.89912 0.90195 0.92484 1.19096 1.01519 0.99014 1.20262 0.86759 1.26344 0.95052 0.93182 0.99084 1.69546 1.31448 1.02530 1.34729 0.86694 0.80596 0.81574 0.80060 1.16871 1.20049 1.16810 0.91405 0.91723 0.91640 0.86296 0.85817 0.86017 0.75395 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 9.99 36.01 0.36 -0.88 15 2 C -0.06 -0.92 5.88 -104.61 -0.61 -1.53 15 3 C -0.18 -3.05 9.68 -39.55 -0.38 -3.44 15 4 C -0.05 -1.02 7.35 -39.37 -0.29 -1.31 15 5 C -0.17 -4.00 5.06 -104.92 -0.53 -4.53 15 6 C 0.11 2.41 7.35 -38.49 -0.28 2.13 15 7 C -0.15 -2.73 9.70 -39.40 -0.38 -3.11 15 8 O -0.19 -4.79 10.54 2.83 0.03 -4.76 15 9 C -0.24 -6.31 7.26 -35.42 -0.26 -6.57 15 10 C 0.55 13.52 8.27 34.01 0.28 13.80 15 11 O -0.53 -14.04 16.14 -19.37 -0.31 -14.35 15 12 O -0.52 -10.52 13.56 -43.01 -0.58 -11.11 15 13 C 0.09 2.44 4.99 -104.47 -0.52 1.92 15 14 C -0.37 -10.15 8.77 -38.03 -0.33 -10.48 15 15 H 0.11 3.37 7.49 -52.49 -0.39 2.97 15 16 C 0.09 2.22 5.25 -17.24 -0.09 2.13 15 17 N -0.76 -18.82 13.91 55.58 0.77 -18.05 15 18 Si 0.89 19.41 24.49 -169.99 -4.16 15.25 15 19 H -0.24 -4.87 5.52 56.52 0.31 -4.56 15 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 21 H -0.25 -5.81 7.11 56.52 0.40 -5.41 15 22 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 23 H 0.06 0.67 8.08 -51.93 -0.42 0.25 15 24 H 0.06 0.67 8.08 -51.93 -0.42 0.25 15 25 H 0.12 1.71 8.06 -52.49 -0.42 1.28 15 26 H 0.12 2.53 6.06 -52.49 -0.32 2.21 15 27 H 0.12 1.92 8.06 -52.49 -0.42 1.50 15 28 H 0.39 5.65 8.98 45.56 0.41 6.06 15 29 H 0.29 6.44 8.29 -40.82 -0.34 6.10 15 LS Contribution 259.16 15.07 3.91 3.91 Total: -1.00 -30.29 259.16 -5.03 -35.31 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -1.63 Total: 5.66 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -3.04 Total: -11.86 kcal Atomic # 7 Polarization: -18.82 SS G_CDS: 0.77 Total: -18.05 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.87 Total: -30.22 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.16 Total: 15.25 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.29 -5.03 -35.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259819486.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.525 kcal (2) G-P(sol) polarization free energy of solvation -30.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds