Wall clock time and date at job start Mon Mar 30 2020 05:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34092 * 125.00841 * 2 1 4 4 C 1.37372 * 115.21932 * 179.70347 * 3 2 1 5 5 C 1.36732 * 114.41039 * 0.50356 * 4 3 2 6 6 C 1.46854 * 125.34439 * 179.78909 * 5 4 3 7 7 C 1.40631 * 119.93152 * 179.74550 * 6 5 4 8 8 N 1.31301 * 120.07410 * 179.76411 * 7 6 5 9 9 C 1.34261 * 119.93829 * 0.46453 * 8 7 6 10 10 C 1.40664 * 120.06474 * 179.79119 * 9 8 7 11 11 H 1.08002 * 120.00306 * 179.72709 * 10 9 8 12 12 C 1.40037 * 120.00003 * 359.44259 * 10 9 8 13 13 N 1.30774 * 120.00068 * 0.28124 * 12 10 9 14 14 Si 1.86798 * 120.00322 * 180.27571 * 12 10 9 15 15 H 1.48506 * 109.46989 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.47190 * 120.00163 * 14 12 10 17 17 H 1.48498 * 109.47416 * 240.00403 * 14 12 10 18 18 C 1.41126 * 119.87064 * 359.51424 * 9 8 7 19 19 N 1.31395 * 119.92129 * 0.25088 * 18 9 8 20 20 S 1.75829 * 125.01160 * 179.97438 * 2 1 3 21 21 H 1.09005 * 109.47020 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.47222 * 299.99464 * 1 2 3 23 23 H 1.08998 * 109.47105 * 60.00085 * 1 2 3 24 24 H 1.07996 * 122.39392 * 0.02562 * 3 2 1 25 25 H 1.08001 * 122.79111 * 180.29367 * 4 3 2 26 26 H 1.07994 * 119.96304 * 359.97438 * 7 6 5 27 27 H 0.96991 * 119.99883 * 179.97438 * 13 12 10 28 28 H 1.08000 * 120.03885 * 180.23502 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2762 1.0983 0.0000 4 6 3.6299 0.8648 0.0064 5 6 3.9751 -0.4583 0.0009 6 6 5.3487 -0.9779 0.0014 7 6 5.5737 -2.3661 0.0007 8 7 6.8007 -2.8337 -0.0035 9 6 7.8411 -1.9852 0.0022 10 6 9.1567 -2.4833 0.0022 11 1 9.9929 -1.7999 0.0024 12 6 9.3820 -3.8654 0.0079 13 7 8.3695 -4.6930 0.0077 14 14 11.1289 -4.5269 0.0155 15 1 12.0877 -3.3928 0.0150 16 1 11.3403 -5.3526 1.2317 17 1 11.3477 -5.3612 -1.1933 18 6 7.6125 -0.5926 0.0025 19 7 6.3825 -0.1304 0.0020 20 16 2.5157 -1.4401 0.0006 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 1.8612 2.0953 0.0004 25 1 4.3607 1.6600 0.0118 26 1 4.7365 -3.0482 0.0002 27 1 8.5256 -5.6503 0.0112 28 1 8.4474 0.0924 0.0033 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259823040.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:09 Heat of formation + Delta-G solvation = 42.969626 kcal Electronic energy + Delta-G solvation = -14326.308713 eV Core-core repulsion = 11853.578830 eV Total energy + Delta-G solvation = -2472.729884 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.86985 -38.48999 -36.13356 -34.11943 -33.37948 -31.66948 -29.00251 -26.28890 -24.99663 -23.96332 -23.22558 -20.06022 -19.39993 -18.28433 -17.65229 -16.82372 -16.46244 -15.95786 -15.29527 -15.22591 -14.55740 -14.40831 -13.92857 -13.41155 -13.39223 -13.20012 -13.09155 -12.83078 -12.69672 -12.39066 -11.99737 -11.78807 -11.61296 -11.55033 -11.15544 -10.28700 -9.48337 -9.36773 -8.92557 -8.51697 -6.67433 -0.28775 0.71217 0.71300 1.08315 1.15382 1.39863 1.50792 1.58031 2.01184 2.13958 2.72121 3.71524 3.74064 3.99895 4.11066 4.18178 4.44744 4.51492 4.66659 4.85126 4.89473 4.90752 4.98451 5.09579 5.19926 5.36330 5.46007 5.71890 5.76328 5.98437 6.33677 6.55162 7.20439 7.76158 8.16250 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.061327 B = 0.005039 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.460839 B = 5555.128125 C = 5996.432931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.201 4.201 3 C -0.135 4.135 4 C -0.158 4.158 5 C -0.110 4.110 6 C -0.070 4.070 7 C 0.100 3.900 8 N -0.487 5.487 9 C 0.162 3.838 10 C -0.402 4.402 11 H 0.115 0.885 12 C 0.012 3.988 13 N -0.733 5.733 14 Si 1.002 2.998 15 H -0.244 1.244 16 H -0.264 1.264 17 H -0.264 1.264 18 C -0.059 4.059 19 N -0.422 5.422 20 S 0.102 5.898 21 H 0.071 0.929 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.162 0.838 25 H 0.128 0.872 26 H 0.141 0.859 27 H 0.290 0.710 28 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.684 3.247 0.022 8.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.319 4.319 3 C -0.164 4.164 4 C -0.189 4.189 5 C -0.229 4.229 6 C -0.206 4.206 7 C -0.072 4.072 8 N -0.203 5.203 9 C 0.039 3.961 10 C -0.433 4.433 11 H 0.133 0.867 12 C -0.212 4.212 13 N -0.353 5.353 14 Si 0.820 3.180 15 H -0.167 1.167 16 H -0.189 1.189 17 H -0.189 1.189 18 C -0.234 4.234 19 N -0.134 5.134 20 S 0.365 5.635 21 H 0.090 0.910 22 H 0.108 0.892 23 H 0.108 0.892 24 H 0.180 0.820 25 H 0.146 0.854 26 H 0.158 0.842 27 H 0.101 0.899 28 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.074 1.457 0.017 8.205 hybrid contribution 1.111 1.095 0.009 1.560 sum -6.964 2.552 0.026 7.417 Atomic orbital electron populations 1.20376 0.85164 1.03502 1.04052 1.25039 1.01154 0.94332 1.11390 1.20022 0.91692 1.00302 1.04409 1.20612 0.96862 0.94859 1.06550 1.22830 0.94466 0.96865 1.08735 1.19243 0.90874 0.90946 1.19520 1.23743 0.96396 0.92986 0.94095 1.69481 0.97665 1.36169 1.17021 1.19956 0.94494 0.90062 0.91620 1.20282 0.91999 0.93795 1.37205 0.86741 1.27353 1.04477 0.96931 0.92483 1.70198 1.35088 1.04988 1.25022 0.84847 0.74920 0.79180 0.79017 1.16675 1.18907 1.18889 1.23494 0.93849 0.94703 1.11341 1.67733 0.99596 1.38903 1.07178 1.83764 0.95365 1.10372 1.73962 0.91033 0.89240 0.89229 0.82044 0.85395 0.84152 0.89864 0.82302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.37 71.23 0.74 -0.58 15 2 C -0.20 -5.63 6.52 24.74 0.16 -5.47 15 3 C -0.14 -4.04 10.01 21.12 0.21 -3.83 15 4 C -0.16 -6.03 9.91 21.71 0.22 -5.81 15 5 C -0.11 -4.70 6.41 24.17 0.15 -4.55 15 6 C -0.07 -3.49 6.75 41.70 0.28 -3.21 15 7 C 0.10 5.16 10.78 85.36 0.92 6.08 15 8 N -0.49 -27.43 7.99 -187.45 -1.50 -28.92 15 9 C 0.16 8.83 6.54 40.07 0.26 9.09 15 10 C -0.40 -20.10 9.12 23.30 0.21 -19.89 15 11 H 0.11 5.07 7.85 -2.91 -0.02 5.04 15 12 C 0.01 0.58 5.50 85.29 0.47 1.05 15 13 N -0.73 -37.15 11.46 21.84 0.25 -36.90 15 14 Si 1.00 34.15 29.56 68.60 2.03 36.18 15 15 H -0.24 -7.78 7.11 99.48 0.71 -7.07 15 16 H -0.26 -8.75 7.11 99.48 0.71 -8.04 15 17 H -0.26 -8.74 7.11 99.48 0.71 -8.03 15 18 C -0.06 -3.00 10.97 85.47 0.94 -2.06 15 19 N -0.42 -21.68 10.10 -182.50 -1.84 -23.52 15 20 S 0.10 3.46 22.20 -56.49 -1.25 2.21 15 21 H 0.07 1.20 8.14 -2.38 -0.02 1.18 15 22 H 0.09 1.34 8.14 -2.38 -0.02 1.32 15 23 H 0.09 1.34 8.14 -2.39 -0.02 1.32 15 24 H 0.16 3.71 8.06 -2.91 -0.02 3.69 15 25 H 0.13 5.00 8.01 -2.91 -0.02 4.98 15 26 H 0.14 6.57 7.26 -2.91 -0.02 6.55 15 27 H 0.29 13.02 8.29 -92.71 -0.77 12.26 15 28 H 0.16 7.06 8.06 -2.91 -0.02 7.03 15 Total: -1.00 -63.34 267.47 3.43 -59.91 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 1.18 Total: 20.23 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 4.56 Total: -29.18 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -3.09 Total: -89.35 kcal Atomic # 14 Polarization: 34.15 SS G_CDS: 2.03 Total: 36.18 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.25 Total: 2.21 kcal Total: -63.34 3.43 -59.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823040.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.881 kcal (2) G-P(sol) polarization free energy of solvation -63.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds