Wall clock time and date at job start Mon Mar 30 2020 05:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99937 * 2 1 4 4 H 1.48503 * 109.46826 * 270.00201 * 3 2 1 5 5 H 1.48497 * 109.46995 * 29.99917 * 3 2 1 6 6 H 1.48498 * 109.46788 * 150.00444 * 3 2 1 7 7 C 1.37880 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00076 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99548 * 179.97438 * 7 2 1 10 10 C 1.50707 * 109.46820 * 179.97438 * 9 7 2 11 11 C 1.34827 * 127.12069 * 89.99981 * 10 9 7 12 12 C 1.38795 * 114.72876 * 180.02562 * 11 10 9 13 13 C 1.48388 * 121.76224 * 179.73024 * 12 11 10 14 14 C 1.39766 * 120.53930 * 179.97438 * 13 12 11 15 15 C 1.38410 * 118.31748 * 179.97438 * 14 13 12 16 16 C 1.38322 * 119.28051 * 0.02562 * 15 14 13 17 17 N 1.31889 * 121.02987 * 0.02562 * 16 15 14 18 18 C 1.31746 * 121.85081 * 359.66508 * 17 16 15 19 19 N 1.30849 * 116.47524 * 359.97438 * 12 11 10 20 20 S 1.69568 * 107.16029 * 0.02562 * 19 12 11 21 21 H 0.97000 * 120.00258 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47414 * 60.00015 * 9 7 2 23 23 H 1.09000 * 109.47353 * 299.99689 * 9 7 2 24 24 H 1.08000 * 122.63810 * 0.02562 * 11 10 9 25 25 H 1.08007 * 120.84261 * 0.02562 * 14 13 12 26 26 H 1.07994 * 120.36141 * 180.02562 * 15 14 13 27 27 H 1.07994 * 119.48267 * 179.97438 * 16 15 14 28 28 H 1.08000 * 119.70238 * 180.33468 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0139 -2.6149 -0.0010 11 6 4.2847 -3.3822 -1.0760 12 6 4.7361 -4.6604 -0.7780 13 6 5.0746 -5.6372 -1.8426 14 6 5.5276 -6.9178 -1.5135 15 6 5.8296 -7.7922 -2.5430 16 6 5.6753 -7.3743 -3.8526 17 7 5.2466 -6.1588 -4.1324 18 6 4.9413 -5.2944 -3.1862 19 7 4.8428 -4.9603 0.4912 20 16 4.3600 -3.5933 1.3705 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6803 0.8888 23 1 3.8745 -0.6800 -0.8911 24 1 4.1601 -3.0301 -2.0893 25 1 5.6385 -7.2178 -0.4818 26 1 6.1819 -8.7898 -2.3263 27 1 5.9104 -8.0537 -4.6585 28 1 4.5881 -4.3097 -3.4548 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259823468.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:39 Heat of formation + Delta-G solvation = 66.070970 kcal Electronic energy + Delta-G solvation = -14220.539777 eV Core-core repulsion = 11748.811643 eV Total energy + Delta-G solvation = -2471.728134 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.30227 -38.22688 -33.95030 -32.54461 -31.71733 -31.18768 -28.29695 -25.18826 -23.67017 -22.93672 -21.03960 -19.21982 -17.38803 -17.19172 -16.98229 -15.81572 -15.60517 -14.54966 -14.36766 -14.16304 -13.41193 -13.13070 -13.12063 -12.88519 -12.31594 -12.23740 -11.91662 -11.09764 -10.80462 -10.37654 -10.30623 -10.08116 -9.98672 -9.64207 -9.56281 -9.41821 -8.74233 -8.62579 -7.96980 -6.22877 -4.25701 0.58865 1.19093 1.54882 1.98512 2.28545 2.95902 3.18656 3.27248 3.27404 3.89188 4.26831 4.32835 4.65028 4.77682 4.92017 4.99097 5.09177 5.41146 5.48638 5.53303 5.84641 5.99169 6.04302 6.22902 6.41511 6.58125 6.69813 6.86161 7.04536 7.42551 7.87550 8.28341 8.79231 9.34138 10.89418 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.033539 B = 0.005483 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.644165 B = 5105.179707 C = 5581.086534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.077 0.923 9 C 0.047 3.953 10 C -0.087 4.087 11 C -0.230 4.230 12 C 0.159 3.841 13 C -0.068 4.068 14 C -0.045 4.045 15 C -0.177 4.177 16 C 0.098 3.902 17 N -0.484 5.484 18 C 0.125 3.875 19 N -0.487 5.487 20 S 0.255 5.745 21 H 0.268 0.732 22 H 0.038 0.962 23 H 0.042 0.958 24 H 0.155 0.845 25 H 0.142 0.858 26 H 0.136 0.864 27 H 0.156 0.844 28 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.763 -10.505 -3.392 16.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.128 4.128 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.095 0.905 9 C 0.007 3.993 10 C -0.216 4.216 11 C -0.262 4.262 12 C -0.017 4.017 13 C -0.075 4.075 14 C -0.073 4.073 15 C -0.197 4.197 16 C -0.059 4.059 17 N -0.192 5.192 18 C -0.035 4.035 19 N -0.309 5.309 20 S 0.410 5.590 21 H 0.078 0.922 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.172 0.828 25 H 0.160 0.840 26 H 0.154 0.846 27 H 0.173 0.827 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 11.781 -10.903 -2.141 16.195 hybrid contribution 0.087 1.162 -0.877 1.458 sum 11.868 -9.742 -3.018 15.648 Atomic orbital electron populations 1.69874 1.06254 1.27346 1.49361 1.24941 0.94775 0.99000 0.94046 0.86830 0.80420 0.83581 0.78909 1.19839 1.20891 1.18819 1.20803 0.87301 0.95120 1.52985 0.90521 1.18441 0.97837 0.84439 0.98535 1.25788 0.96127 1.03321 0.96382 1.20996 1.10108 0.93226 1.01890 1.19689 0.98507 0.93063 0.90428 1.19249 1.01864 0.93626 0.92771 1.21734 0.93113 0.91846 1.00619 1.22099 1.02712 1.01082 0.93789 1.22848 0.94569 0.92817 0.95705 1.67737 1.11250 1.03204 1.36999 1.23016 0.94036 0.99122 0.87331 1.76598 1.26351 1.21065 1.06895 1.83860 1.58949 1.01316 1.14871 0.92238 0.94352 0.94002 0.82771 0.84033 0.84575 0.82696 0.81897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.96 55.43 0.77 -25.47 15 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 15 3 Si 0.88 20.15 27.47 -169.99 -4.67 15.48 15 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.26 -5.74 6.54 56.52 0.37 -5.37 15 7 C -0.52 -14.10 9.65 -34.44 -0.33 -14.43 15 8 H 0.08 2.28 7.98 -52.49 -0.42 1.86 15 9 C 0.05 1.05 4.61 -29.03 -0.13 0.91 15 10 C -0.09 -1.74 5.76 -35.51 -0.20 -1.95 15 11 C -0.23 -4.18 9.50 -40.59 -0.39 -4.56 15 12 C 0.16 2.74 6.65 -83.90 -0.56 2.18 15 13 C -0.07 -1.01 5.89 -104.75 -0.62 -1.63 15 14 C -0.05 -0.58 9.73 -38.95 -0.38 -0.96 15 15 C -0.18 -1.81 10.10 -39.49 -0.40 -2.21 15 16 C 0.10 1.06 11.17 -17.50 -0.20 0.86 15 17 N -0.48 -6.51 10.35 -12.97 -0.13 -6.64 15 18 C 0.12 1.74 10.64 -17.19 -0.18 1.55 15 19 N -0.49 -8.75 11.43 32.05 0.37 -8.39 15 20 S 0.25 4.67 23.70 -107.50 -2.55 2.12 15 21 H 0.27 7.34 8.31 -40.82 -0.34 7.00 15 22 H 0.04 0.84 7.20 -51.93 -0.37 0.46 15 23 H 0.04 0.89 7.57 -51.93 -0.39 0.50 15 24 H 0.15 2.50 6.61 -52.49 -0.35 2.15 15 25 H 0.14 1.74 7.73 -52.48 -0.41 1.34 15 26 H 0.14 0.96 8.06 -52.49 -0.42 0.54 15 27 H 0.16 1.16 8.06 -52.49 -0.42 0.74 15 28 H 0.16 2.06 6.47 -52.49 -0.34 1.72 15 LS Contribution 264.84 15.07 3.99 3.99 Total: -1.00 -30.07 264.84 -8.00 -38.06 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -2.29 Total: -0.90 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -3.49 Total: -18.25 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 1.01 Total: -40.50 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.67 Total: 15.48 kcal Atomic # 16 Polarization: 4.67 SS G_CDS: -2.55 Total: 2.12 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.07 -8.00 -38.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823468.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.133 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds