Wall clock time and date at job start Mon Mar 30 2020 05:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99937 * 2 1 4 4 H 1.48503 * 109.46826 * 270.00201 * 3 2 1 5 5 H 1.48497 * 109.46995 * 29.99917 * 3 2 1 6 6 H 1.48498 * 109.46788 * 150.00444 * 3 2 1 7 7 C 1.37880 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00076 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99548 * 179.97438 * 7 2 1 10 10 C 1.50707 * 109.46820 * 179.97438 * 9 7 2 11 11 C 1.34827 * 127.12069 * 89.99981 * 10 9 7 12 12 C 1.38795 * 114.72876 * 180.02562 * 11 10 9 13 13 C 1.48388 * 121.76224 * 179.73024 * 12 11 10 14 14 C 1.39766 * 120.53930 * 179.97438 * 13 12 11 15 15 C 1.38410 * 118.31748 * 179.97438 * 14 13 12 16 16 C 1.38322 * 119.28051 * 0.02562 * 15 14 13 17 17 N 1.31889 * 121.02987 * 0.02562 * 16 15 14 18 18 C 1.31746 * 121.85081 * 359.66508 * 17 16 15 19 19 N 1.30849 * 116.47524 * 359.97438 * 12 11 10 20 20 S 1.69568 * 107.16029 * 0.02562 * 19 12 11 21 21 H 0.97000 * 120.00258 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47414 * 60.00015 * 9 7 2 23 23 H 1.09000 * 109.47353 * 299.99689 * 9 7 2 24 24 H 1.08000 * 122.63810 * 0.02562 * 11 10 9 25 25 H 1.08007 * 120.84261 * 0.02562 * 14 13 12 26 26 H 1.07994 * 120.36141 * 180.02562 * 15 14 13 27 27 H 1.07994 * 119.48267 * 179.97438 * 16 15 14 28 28 H 1.08000 * 119.70238 * 180.33468 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0139 -2.6149 -0.0010 11 6 4.2847 -3.3822 -1.0760 12 6 4.7361 -4.6604 -0.7780 13 6 5.0746 -5.6372 -1.8426 14 6 5.5276 -6.9178 -1.5135 15 6 5.8296 -7.7922 -2.5430 16 6 5.6753 -7.3743 -3.8526 17 7 5.2466 -6.1588 -4.1324 18 6 4.9413 -5.2944 -3.1862 19 7 4.8428 -4.9603 0.4912 20 16 4.3600 -3.5933 1.3705 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6803 0.8888 23 1 3.8745 -0.6800 -0.8911 24 1 4.1601 -3.0301 -2.0893 25 1 5.6385 -7.2178 -0.4818 26 1 6.1819 -8.7898 -2.3263 27 1 5.9104 -8.0537 -4.6585 28 1 4.5881 -4.3097 -3.4548 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259823468.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:38 Heat of formation + Delta-G solvation = 47.611977 kcal Electronic energy + Delta-G solvation = -14221.340219 eV Core-core repulsion = 11748.811643 eV Total energy + Delta-G solvation = -2472.528576 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.34763 -39.53905 -35.74677 -33.93597 -33.10054 -32.30266 -30.00127 -26.51446 -24.96005 -24.25888 -22.42043 -20.60876 -19.05752 -18.78017 -18.19037 -16.95130 -16.72590 -16.27430 -15.59686 -15.44303 -14.84556 -14.56582 -14.37993 -14.11353 -13.98931 -13.76594 -13.05542 -12.78089 -12.57160 -12.03646 -11.92883 -11.71662 -11.48214 -11.08986 -10.81845 -10.52402 -10.46512 -10.16541 -9.28159 -8.33472 -6.42056 -0.58704 0.18823 0.28710 0.53597 0.86449 1.39137 1.40720 1.51449 1.64945 2.33293 2.89434 3.01118 3.27333 3.58522 3.89333 3.93155 4.07723 4.08447 4.27466 4.50648 4.59708 4.75406 4.89054 4.95591 5.07023 5.15786 5.27852 5.44108 5.61337 5.70636 6.15792 6.63058 6.93248 7.21818 8.82681 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.033539 B = 0.005483 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.644165 B = 5105.179707 C = 5581.086534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.015 3.985 3 Si 0.948 3.052 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.240 1.240 7 C -0.529 4.529 8 H 0.029 0.971 9 C 0.053 3.947 10 C -0.119 4.119 11 C -0.224 4.224 12 C 0.163 3.837 13 C -0.096 4.096 14 C -0.052 4.052 15 C -0.163 4.163 16 C 0.104 3.896 17 N -0.504 5.504 18 C 0.119 3.881 19 N -0.491 5.491 20 S 0.255 5.745 21 H 0.270 0.730 22 H 0.047 0.953 23 H 0.057 0.943 24 H 0.170 0.830 25 H 0.143 0.857 26 H 0.176 0.824 27 H 0.193 0.807 28 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.975 -11.349 -4.424 18.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.183 4.183 3 Si 0.770 3.230 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.163 1.163 7 C -0.567 4.567 8 H 0.048 0.952 9 C 0.014 3.986 10 C -0.248 4.248 11 C -0.257 4.257 12 C -0.013 4.013 13 C -0.103 4.103 14 C -0.079 4.079 15 C -0.182 4.182 16 C -0.054 4.054 17 N -0.213 5.213 18 C -0.041 4.041 19 N -0.313 5.313 20 S 0.410 5.590 21 H 0.079 0.921 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.187 0.813 25 H 0.161 0.839 26 H 0.193 0.807 27 H 0.210 0.790 28 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 14.012 -11.761 -3.162 18.565 hybrid contribution -0.596 1.171 -0.650 1.466 sum 13.416 -10.589 -3.812 17.512 Atomic orbital electron populations 1.70037 1.08417 1.28587 1.51253 1.25930 0.95582 1.03358 0.93479 0.85688 0.79695 0.77897 0.79674 1.18602 1.20928 1.16314 1.20997 0.89962 0.93387 1.52387 0.95215 1.18251 0.94603 0.86354 0.99426 1.25647 0.98300 1.03003 0.97889 1.21266 1.08758 0.93390 1.02266 1.19983 0.97284 0.93224 0.90785 1.19260 1.04415 0.94263 0.92328 1.21913 0.92930 0.91500 1.01592 1.22484 1.00887 1.02129 0.92725 1.23557 0.92398 0.92219 0.97208 1.67797 1.12160 1.04378 1.36943 1.23065 0.94198 0.99648 0.87148 1.76623 1.26788 1.20609 1.07299 1.83727 1.59286 1.01374 1.14599 0.92082 0.93511 0.92542 0.81313 0.83935 0.80680 0.78979 0.81693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.29 13.96 21.45 0.30 -56.99 15 2 C 0.01 0.83 5.47 84.66 0.46 1.29 15 3 Si 0.95 41.17 27.47 68.60 1.88 43.06 15 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 15 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 6 H -0.24 -9.43 6.54 99.48 0.65 -8.78 15 7 C -0.53 -29.23 9.65 25.60 0.25 -28.99 15 8 H 0.03 1.86 7.98 -2.91 -0.02 1.84 15 9 C 0.05 2.35 4.61 29.10 0.13 2.48 15 10 C -0.12 -4.81 5.76 24.90 0.14 -4.66 15 11 C -0.22 -8.11 9.50 21.62 0.21 -7.91 15 12 C 0.16 5.56 6.65 42.13 0.28 5.84 15 13 C -0.10 -2.73 5.89 -19.95 -0.12 -2.85 15 14 C -0.05 -1.21 9.73 22.68 0.22 -0.99 15 15 C -0.16 -2.72 10.10 22.33 0.23 -2.50 15 16 C 0.10 1.86 11.17 84.70 0.95 2.80 15 17 N -0.50 -12.45 10.35 -194.94 -2.02 -14.47 15 18 C 0.12 3.17 10.64 84.96 0.90 4.07 15 19 N -0.49 -17.50 11.43 -52.50 -0.60 -18.10 15 20 S 0.25 9.38 23.70 -56.49 -1.34 8.04 15 21 H 0.27 15.23 8.31 -92.71 -0.77 14.46 15 22 H 0.05 1.99 7.20 -2.39 -0.02 1.97 15 23 H 0.06 2.33 7.57 -2.39 -0.02 2.31 15 24 H 0.17 5.42 6.61 -2.91 -0.02 5.41 15 25 H 0.14 3.26 7.73 -2.91 -0.02 3.24 15 26 H 0.18 1.55 8.06 -2.91 -0.02 1.53 15 27 H 0.19 1.92 8.06 -2.91 -0.02 1.90 15 28 H 0.17 4.10 6.47 -2.91 -0.02 4.08 15 Total: -1.00 -66.59 264.84 3.01 -63.58 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.13 Total: 6.30 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 3.65 Total: -31.41 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -2.32 Total: -89.56 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.88 Total: 43.06 kcal Atomic # 16 Polarization: 9.38 SS G_CDS: -1.34 Total: 8.04 kcal Total: -66.59 3.01 -63.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823468.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.194 kcal (2) G-P(sol) polarization free energy of solvation -66.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds