Wall clock time and date at job start Mon Mar 30 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33834 * 122.08147 * 2 1 4 4 S 1.76257 * 108.19517 * 179.78142 * 3 2 1 5 5 C 1.76180 * 89.83130 * 0.30650 * 4 3 2 6 6 C 1.47868 * 125.47078 * 179.97438 * 5 4 3 7 7 C 1.40237 * 120.84508 * 179.69396 * 6 5 4 8 8 C 1.38450 * 119.40364 * 179.97438 * 7 6 5 9 9 N 1.31498 * 121.16901 * 359.97438 * 8 7 6 10 10 C 1.33658 * 121.84762 * 0.02562 * 9 8 7 11 11 C 1.41421 * 119.77217 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00335 * 180.02562 * 11 10 9 13 13 C 1.40037 * 119.99975 * 359.72274 * 11 10 9 14 14 N 1.30744 * 120.00050 * 0.27903 * 13 11 10 15 15 Si 1.86798 * 120.00322 * 180.27342 * 13 11 10 16 16 H 1.48510 * 109.46922 * 90.00000 * 15 13 11 17 17 H 1.48495 * 109.47721 * 210.00538 * 15 13 11 18 18 H 1.48499 * 109.46902 * 330.00697 * 15 13 11 19 19 C 1.39535 * 120.84112 * 359.94245 * 6 5 4 20 20 N 1.30225 * 109.06091 * 359.69187 * 5 4 3 21 21 H 1.09004 * 109.46899 * 269.99904 * 1 2 3 22 22 H 1.09000 * 109.47314 * 30.00048 * 1 2 3 23 23 H 1.09004 * 109.47584 * 150.00158 * 1 2 3 24 24 H 1.08002 * 125.90116 * 359.97438 * 3 2 1 25 25 H 1.08001 * 120.29796 * 359.96840 * 7 6 5 26 26 H 1.08000 * 119.41037 * 180.02562 * 8 7 6 27 27 H 0.96991 * 119.99866 * 179.97438 * 14 13 11 28 28 H 1.07997 * 120.59509 * 0.02562 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2179 1.1340 0.0000 4 16 3.9289 0.7110 0.0064 5 6 3.5011 -0.9981 -0.0010 6 6 4.4609 -2.1229 -0.0007 7 6 4.0117 -3.4514 -0.0005 8 6 4.9367 -4.4816 -0.0008 9 7 6.2286 -4.2364 -0.0018 10 6 6.7097 -2.9895 -0.0021 11 6 8.1078 -2.7762 -0.0027 12 1 8.5007 -1.7702 -0.0025 13 6 8.9828 -3.8695 0.0029 14 7 8.5073 -5.0874 0.0031 15 14 10.8294 -3.5880 0.0099 16 1 11.3131 -3.5108 1.4119 17 1 11.5045 -4.7132 -0.6854 18 1 11.1388 -2.3160 -0.6912 19 6 5.8366 -1.8894 0.0045 20 7 2.2038 -1.1117 -0.0006 21 1 -0.3633 0.0000 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 1.8130 2.1352 -0.0004 25 1 2.9539 -3.6689 0.0001 26 1 4.5909 -5.5048 -0.0010 27 1 9.1134 -5.8447 0.0066 28 1 6.2229 -0.8809 0.0088 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259823608.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:45 Heat of formation + Delta-G solvation = 52.917716 kcal Electronic energy + Delta-G solvation = -14384.564346 eV Core-core repulsion = 11912.265844 eV Total energy + Delta-G solvation = -2472.298502 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.81034 -39.86833 -35.65115 -34.05988 -32.05597 -31.53750 -28.52166 -27.75406 -26.01298 -23.49857 -22.68162 -20.22751 -19.56355 -18.40540 -17.47735 -16.55342 -16.14793 -15.97935 -15.87786 -15.30916 -14.47489 -14.32824 -14.26007 -13.72486 -13.40643 -13.32556 -12.97702 -12.84709 -12.74288 -12.29917 -12.15025 -11.76362 -11.32484 -10.85236 -10.71606 -10.30603 -9.67741 -9.60956 -9.18686 -8.33699 -6.56801 -0.66155 0.31561 0.78482 0.82786 1.00980 1.42639 1.53087 1.57360 2.00856 2.23053 2.83489 3.04655 3.86159 3.97657 4.15737 4.27027 4.33108 4.59456 4.70063 4.79061 4.81563 4.85504 4.98388 5.15821 5.32159 5.35135 5.53269 5.69366 5.98025 6.22274 6.64492 6.78038 6.87680 8.09208 8.42236 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.043034 B = 0.005573 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.498664 B = 5022.586368 C = 5657.934360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.041 3.959 3 C -0.247 4.247 4 S 0.095 5.905 5 C 0.108 3.892 6 C 0.019 3.981 7 C -0.270 4.270 8 C 0.112 3.888 9 N -0.510 5.510 10 C 0.225 3.775 11 C -0.461 4.461 12 H 0.094 0.906 13 C 0.023 3.977 14 N -0.753 5.753 15 Si 0.989 3.011 16 H -0.262 1.262 17 H -0.268 1.268 18 H -0.254 1.254 19 C -0.258 4.258 20 N -0.487 5.487 21 H 0.085 0.915 22 H 0.102 0.898 23 H 0.068 0.932 24 H 0.216 0.784 25 H 0.121 0.879 26 H 0.148 0.852 27 H 0.281 0.719 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.075 10.035 0.010 12.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.091 4.091 3 C -0.386 4.386 4 S 0.352 5.648 5 C -0.166 4.166 6 C 0.009 3.991 7 C -0.296 4.296 8 C -0.052 4.052 9 N -0.224 5.224 10 C 0.101 3.899 11 C -0.492 4.492 12 H 0.112 0.888 13 C -0.199 4.199 14 N -0.375 5.375 15 Si 0.809 3.191 16 H -0.187 1.187 17 H -0.192 1.192 18 H -0.177 1.177 19 C -0.284 4.284 20 N -0.202 5.202 21 H 0.104 0.896 22 H 0.121 0.879 23 H 0.087 0.913 24 H 0.233 0.767 25 H 0.139 0.861 26 H 0.165 0.835 27 H 0.092 0.908 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.718 9.267 0.013 11.447 hybrid contribution -0.740 0.446 0.023 0.864 sum -7.458 9.714 0.036 12.247 Atomic orbital electron populations 1.20487 0.84570 1.04316 1.03874 1.20869 1.00140 0.86139 1.01991 1.27257 0.93834 1.04931 1.12548 1.84868 1.08492 1.02713 1.68749 1.25884 0.92056 0.95731 1.02924 1.17974 0.90622 0.90868 0.99599 1.21570 0.99877 0.91859 1.16294 1.22943 0.89538 0.98879 0.93827 1.68695 1.13474 1.22642 1.17592 1.18914 0.94585 0.86894 0.89513 1.20017 0.89864 0.95226 1.44131 0.88829 1.27028 1.06323 0.94084 0.92452 1.70215 1.38500 0.99861 1.28878 0.85105 0.75001 0.79486 0.79522 1.18679 1.19228 1.17709 1.21898 0.91865 0.99292 1.15319 1.66394 1.04474 1.32562 1.16774 0.89646 0.87911 0.91305 0.76703 0.86147 0.83509 0.90798 0.86738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 10.28 71.24 0.73 -0.68 15 2 C 0.04 1.18 6.69 41.65 0.28 1.46 15 3 C -0.25 -6.13 11.09 66.82 0.74 -5.39 15 4 S 0.10 3.00 22.51 -56.49 -1.27 1.73 15 5 C 0.11 4.35 7.37 87.48 0.64 5.00 15 6 C 0.02 0.90 5.90 -19.93 -0.12 0.78 15 7 C -0.27 -12.68 9.78 22.81 0.22 -12.46 15 8 C 0.11 5.57 11.16 84.79 0.95 6.51 15 9 N -0.51 -28.77 7.84 -189.41 -1.49 -30.25 15 10 C 0.23 12.55 6.55 40.19 0.26 12.82 15 11 C -0.46 -24.78 9.14 23.49 0.21 -24.57 15 12 H 0.09 4.64 7.85 -2.91 -0.02 4.62 15 13 C 0.02 1.17 5.50 85.29 0.47 1.64 15 14 N -0.75 -40.36 11.46 21.84 0.25 -40.11 15 15 Si 0.99 37.42 29.56 68.60 2.03 39.45 15 16 H -0.26 -9.58 7.11 99.48 0.71 -8.87 15 17 H -0.27 -9.69 7.11 99.48 0.71 -8.98 15 18 H -0.25 -9.19 7.11 99.48 0.71 -8.48 15 19 C -0.26 -12.88 9.41 23.12 0.22 -12.66 15 20 N -0.49 -18.29 10.19 -177.78 -1.81 -20.10 15 21 H 0.08 1.44 8.14 -2.38 -0.02 1.42 15 22 H 0.10 1.32 8.11 -2.39 -0.02 1.30 15 23 H 0.07 1.42 8.14 -2.38 -0.02 1.40 15 24 H 0.22 3.33 8.06 -2.91 -0.02 3.31 15 25 H 0.12 5.24 7.90 -2.91 -0.02 5.21 15 26 H 0.15 6.33 8.06 -2.91 -0.02 6.31 15 27 H 0.28 13.55 8.29 -92.71 -0.77 12.78 15 28 H 0.11 5.25 7.42 -2.91 -0.02 5.23 15 Total: -1.00 -65.08 267.73 3.50 -61.58 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 1.18 Total: 15.24 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 4.61 Total: -27.54 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -3.05 Total: -90.46 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.27 Total: 1.73 kcal Total: -65.08 3.50 -61.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259823608.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.499 kcal (2) G-P(sol) polarization free energy of solvation -65.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds