Wall clock time and date at job start Mon Mar 30 2020 05:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47395 * 305.00669 * 4 3 2 6 6 C 1.50699 * 109.46610 * 65.00392 * 4 3 2 7 7 H 1.08004 * 119.99731 * 239.99688 * 6 4 3 8 8 C 1.37871 * 120.00667 * 60.00191 * 6 4 3 9 9 N 1.31516 * 119.99699 * 359.97438 * 8 6 4 10 10 Si 1.86794 * 120.00537 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47225 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47559 * 119.99857 * 10 8 6 13 13 H 1.48505 * 109.47115 * 240.00033 * 10 8 6 14 14 C 1.50699 * 109.47053 * 185.00062 * 4 3 2 15 15 C 1.33350 * 125.18624 * 119.72424 * 14 4 3 16 16 C 1.38470 * 114.92697 * 179.79518 * 15 14 4 17 17 C 1.33494 * 114.88633 * 0.49424 * 16 15 14 18 18 Cl 1.73601 * 125.21330 * 179.71447 * 17 16 15 19 19 S 1.75874 * 125.19313 * 300.02647 * 14 4 3 20 20 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47392 * 299.99575 * 1 2 3 22 22 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 23 23 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 24 24 H 1.08993 * 109.47318 * 299.99656 * 3 2 1 25 25 H 0.96999 * 120.00336 * 180.02562 * 9 8 6 26 26 H 1.07997 * 122.53230 * 359.97426 * 15 14 4 27 27 H 1.08005 * 122.55634 * 180.23171 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5684 0.8426 6 6 3.9892 0.5462 -1.2868 7 1 4.5385 -0.3835 -1.2643 8 6 3.7034 1.1488 -2.4934 9 7 3.0343 2.2807 -2.5209 10 14 4.2665 0.3579 -4.0892 11 1 4.9951 -0.9005 -3.7878 12 1 3.0846 0.0554 -4.9359 13 1 5.1680 1.2902 -4.8127 14 6 4.1480 2.5559 0.1245 15 6 4.9471 2.9540 1.1150 16 6 5.3942 4.2607 1.0148 17 6 4.9489 4.9265 -0.0530 18 17 5.3338 6.5752 -0.4369 19 16 3.9119 3.8778 -1.0113 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.6886 1.8463 0.8900 24 1 1.6887 1.8463 -0.8899 25 1 2.8328 2.7046 -3.3698 26 1 5.2267 2.3053 1.9320 27 1 6.0498 4.7084 1.7472 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259825680.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:50 Heat of formation + Delta-G solvation = -29.997390 kcal Electronic energy + Delta-G solvation = -13853.862314 eV Core-core repulsion = 11343.242742 eV Total energy + Delta-G solvation = -2510.619572 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.022 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.38994 -36.48244 -35.52006 -34.04885 -30.70739 -27.15949 -26.08824 -24.66438 -22.54061 -20.82320 -18.25441 -17.01634 -15.77025 -15.42063 -15.12258 -14.53868 -14.19844 -13.96369 -12.99261 -12.45313 -12.20574 -11.99290 -11.64796 -11.47806 -11.26219 -10.95981 -10.77151 -10.65681 -10.44829 -10.17884 -9.96412 -9.41112 -9.32141 -8.86236 -8.36855 -7.18135 -6.98533 -6.40695 -4.56905 2.25398 2.66721 3.09795 3.18986 3.23222 3.57954 3.61673 3.84301 4.14064 4.74938 4.87892 5.84416 5.93126 6.12320 6.21478 6.32252 6.48280 6.58501 6.66703 6.83447 7.13556 7.23625 7.45057 7.49349 7.57276 7.87676 8.20408 8.41454 9.04420 10.43654 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.022071 B = 0.009659 C = 0.007739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.315883 B = 2898.170992 C = 3617.053565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.382 6.382 3 C 0.066 3.934 4 C 0.089 3.911 5 H 0.051 0.949 6 C -0.435 4.435 7 H 0.073 0.927 8 C 0.037 3.963 9 N -0.878 5.878 10 Si 0.922 3.078 11 H -0.269 1.269 12 H -0.278 1.278 13 H -0.278 1.278 14 C -0.134 4.134 15 C -0.185 4.185 16 C -0.148 4.148 17 C -0.271 4.271 18 Cl -0.086 7.086 19 S 0.332 5.668 20 H 0.071 0.929 21 H 0.027 0.973 22 H 0.033 0.967 23 H 0.013 0.987 24 H 0.085 0.915 25 H 0.286 0.714 26 H 0.118 0.882 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.755 1.561 1.828 2.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.301 6.301 3 C -0.011 4.011 4 C 0.069 3.931 5 H 0.070 0.930 6 C -0.473 4.473 7 H 0.091 0.909 8 C -0.156 4.156 9 N -0.525 5.525 10 Si 0.749 3.251 11 H -0.194 1.194 12 H -0.204 1.204 13 H -0.204 1.204 14 C -0.254 4.254 15 C -0.215 4.215 16 C -0.181 4.181 17 C -0.414 4.414 18 Cl -0.058 7.058 19 S 0.592 5.408 20 H 0.090 0.910 21 H 0.045 0.955 22 H 0.052 0.948 23 H 0.031 0.969 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.136 0.864 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.455 1.822 0.280 3.070 hybrid contribution 1.179 -0.008 0.741 1.392 sum -1.276 1.814 1.021 2.442 Atomic orbital electron populations 1.22545 0.83513 1.01059 0.98977 1.87853 1.17318 1.29673 1.95248 1.22854 0.95477 0.83115 0.99669 1.17490 0.90240 0.87982 0.97409 0.93024 1.21632 1.29646 1.05905 0.90082 0.90921 1.24990 0.94914 0.95104 1.00543 1.66946 1.42201 1.16605 1.26773 0.85970 0.78609 0.79386 0.81141 1.19354 1.20410 1.20383 1.24974 1.03284 0.99703 0.97464 1.19506 1.04705 0.95730 1.01539 1.19652 1.04783 0.95091 0.98555 1.29223 1.16205 0.89663 1.06277 1.98220 1.93977 1.19490 1.94117 1.87107 1.42113 0.95226 1.16344 0.90993 0.95474 0.94804 0.96876 0.89691 0.90163 0.86415 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 11.01 101.05 1.11 1.73 15 2 O -0.38 -8.33 10.46 -35.23 -0.37 -8.70 15 3 C 0.07 1.47 5.07 37.16 0.19 1.66 15 4 C 0.09 2.10 2.73 -92.92 -0.25 1.85 15 5 H 0.05 1.19 8.08 -51.93 -0.42 0.77 15 6 C -0.43 -10.78 8.47 -34.44 -0.29 -11.07 15 7 H 0.07 1.80 7.81 -52.48 -0.41 1.39 15 8 C 0.04 0.88 4.99 -17.82 -0.09 0.79 15 9 N -0.88 -20.87 6.54 55.43 0.36 -20.51 15 10 Si 0.92 19.52 29.54 -169.99 -5.02 14.50 15 11 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 12 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 13 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 14 C -0.13 -3.08 5.06 -36.02 -0.18 -3.26 15 15 C -0.18 -3.98 10.01 -41.20 -0.41 -4.39 15 16 C -0.15 -3.11 10.13 -41.16 -0.42 -3.53 15 17 C -0.27 -5.79 7.10 29.07 0.21 -5.58 15 18 Cl -0.09 -1.63 29.29 -51.86 -1.52 -3.14 15 19 S 0.33 7.43 18.49 -107.50 -1.99 5.44 15 20 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 21 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 15 22 H 0.03 0.56 8.14 -51.93 -0.42 0.14 15 23 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 15 24 H 0.09 2.03 5.95 -51.93 -0.31 1.72 15 25 H 0.29 6.48 8.31 -40.82 -0.34 6.14 15 26 H 0.12 2.30 8.06 -52.49 -0.42 1.88 15 27 H 0.11 2.01 8.06 -52.48 -0.42 1.59 15 LS Contribution 259.04 15.07 3.90 3.90 Total: -1.00 -24.94 259.04 -7.58 -32.52 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -2.81 Total: -2.20 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -0.14 Total: -21.81 kcal Atomic # 7 Polarization: -20.87 SS G_CDS: 0.36 Total: -20.51 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -0.37 Total: -8.70 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 16 Polarization: 7.43 SS G_CDS: -1.99 Total: 5.44 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -1.52 Total: -3.14 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -24.94 -7.58 -32.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259825680.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.524 kcal (2) G-P(sol) polarization free energy of solvation -24.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds