Wall clock time and date at job start Mon Mar 30 2020 05:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47395 * 305.00669 * 4 3 2 6 6 C 1.50699 * 109.46610 * 65.00392 * 4 3 2 7 7 H 1.08004 * 119.99731 * 239.99688 * 6 4 3 8 8 C 1.37871 * 120.00667 * 60.00191 * 6 4 3 9 9 N 1.31516 * 119.99699 * 359.97438 * 8 6 4 10 10 Si 1.86794 * 120.00537 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47225 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47559 * 119.99857 * 10 8 6 13 13 H 1.48505 * 109.47115 * 240.00033 * 10 8 6 14 14 C 1.50699 * 109.47053 * 185.00062 * 4 3 2 15 15 C 1.33350 * 125.18624 * 119.72424 * 14 4 3 16 16 C 1.38470 * 114.92697 * 179.79518 * 15 14 4 17 17 C 1.33494 * 114.88633 * 0.49424 * 16 15 14 18 18 Cl 1.73601 * 125.21330 * 179.71447 * 17 16 15 19 19 S 1.75874 * 125.19313 * 300.02647 * 14 4 3 20 20 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47392 * 299.99575 * 1 2 3 22 22 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 23 23 H 1.09001 * 109.46798 * 60.00190 * 3 2 1 24 24 H 1.08993 * 109.47318 * 299.99656 * 3 2 1 25 25 H 0.96999 * 120.00336 * 180.02562 * 9 8 6 26 26 H 1.07997 * 122.53230 * 359.97426 * 15 14 4 27 27 H 1.08005 * 122.55634 * 180.23171 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5684 0.8426 6 6 3.9892 0.5462 -1.2868 7 1 4.5385 -0.3835 -1.2643 8 6 3.7034 1.1488 -2.4934 9 7 3.0343 2.2807 -2.5209 10 14 4.2665 0.3579 -4.0892 11 1 4.9951 -0.9005 -3.7878 12 1 3.0846 0.0554 -4.9359 13 1 5.1680 1.2902 -4.8127 14 6 4.1480 2.5559 0.1245 15 6 4.9471 2.9540 1.1150 16 6 5.3942 4.2607 1.0148 17 6 4.9489 4.9265 -0.0530 18 17 5.3338 6.5752 -0.4369 19 16 3.9119 3.8778 -1.0113 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5137 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.6886 1.8463 0.8900 24 1 1.6887 1.8463 -0.8899 25 1 2.8328 2.7046 -3.3698 26 1 5.2267 2.3053 1.9320 27 1 6.0498 4.7084 1.7472 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259825680.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:50 Heat of formation + Delta-G solvation = -42.100275 kcal Electronic energy + Delta-G solvation = -13854.387134 eV Core-core repulsion = 11343.242742 eV Total energy + Delta-G solvation = -2511.144392 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.06846 -38.12559 -37.13119 -35.79438 -32.47160 -28.79972 -27.72172 -26.30784 -24.24006 -22.58049 -19.94136 -18.80237 -17.47921 -17.15155 -16.76530 -16.14808 -15.86150 -15.54061 -14.67064 -14.08910 -13.86941 -13.68464 -13.28613 -13.11557 -12.93741 -12.62324 -12.39787 -12.35111 -12.01007 -11.87921 -11.59161 -11.15633 -11.09543 -10.53066 -10.09229 -8.88676 -8.72847 -8.18378 -6.41760 0.53938 0.97458 1.41493 1.46956 1.56014 1.88992 1.91531 2.15651 2.39301 3.03610 3.22915 4.46333 4.51744 4.64600 4.65182 4.78148 4.85707 4.87907 4.98914 5.06106 5.40988 5.47793 5.66921 5.74197 5.86475 6.10106 6.55561 6.61243 7.20667 8.63377 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.022071 B = 0.009659 C = 0.007739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.315883 B = 2898.170992 C = 3617.053565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.407 6.407 3 C 0.077 3.923 4 C 0.086 3.914 5 H 0.047 0.953 6 C -0.465 4.465 7 H 0.061 0.939 8 C 0.012 3.988 9 N -0.884 5.884 10 Si 0.969 3.031 11 H -0.272 1.272 12 H -0.274 1.274 13 H -0.277 1.277 14 C -0.154 4.154 15 C -0.183 4.183 16 C -0.150 4.150 17 C -0.276 4.276 18 Cl -0.063 7.063 19 S 0.314 5.686 20 H 0.097 0.903 21 H 0.044 0.956 22 H 0.032 0.968 23 H 0.019 0.981 24 H 0.068 0.932 25 H 0.288 0.712 26 H 0.135 0.865 27 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.695 1.963 1.974 3.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.326 6.326 3 C 0.000 4.000 4 C 0.065 3.935 5 H 0.065 0.935 6 C -0.503 4.503 7 H 0.080 0.920 8 C -0.180 4.180 9 N -0.531 5.531 10 Si 0.794 3.206 11 H -0.196 1.196 12 H -0.200 1.200 13 H -0.203 1.203 14 C -0.274 4.274 15 C -0.213 4.213 16 C -0.183 4.183 17 C -0.419 4.419 18 Cl -0.035 7.035 19 S 0.574 5.426 20 H 0.116 0.884 21 H 0.063 0.937 22 H 0.051 0.949 23 H 0.038 0.962 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.153 0.847 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.413 2.230 0.433 3.314 hybrid contribution 1.139 -0.058 0.749 1.364 sum -1.274 2.172 1.182 2.782 Atomic orbital electron populations 1.22799 0.81046 1.03085 0.99750 1.87808 1.20091 1.29323 1.95384 1.22621 0.94967 0.83400 0.99021 1.17489 0.91005 0.88212 0.96744 0.93499 1.21697 1.31148 1.06240 0.91244 0.92030 1.25522 0.94726 0.95454 1.02332 1.67099 1.41844 1.16802 1.27312 0.85270 0.78233 0.78530 0.78548 1.19630 1.19966 1.20289 1.25028 1.04279 0.99804 0.98261 1.19795 1.03735 0.96295 1.01515 1.19872 1.04756 0.94796 0.98828 1.29107 1.15735 0.90918 1.06157 1.98224 1.93748 1.17548 1.94001 1.86953 1.42837 0.95726 1.17061 0.88424 0.93719 0.94921 0.96243 0.91389 0.89972 0.84678 0.85512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 11.01 113.37 1.25 2.21 15 2 O -0.41 -17.56 10.46 -148.98 -1.56 -19.11 15 3 C 0.08 3.45 5.07 71.98 0.36 3.81 15 4 C 0.09 4.06 2.73 -12.28 -0.03 4.02 15 5 H 0.05 2.18 8.08 -2.39 -0.02 2.16 15 6 C -0.47 -23.28 8.47 25.60 0.22 -23.06 15 7 H 0.06 3.11 7.81 -2.91 -0.02 3.09 15 8 C 0.01 0.55 4.99 84.65 0.42 0.97 15 9 N -0.88 -41.90 6.54 21.45 0.14 -41.76 15 10 Si 0.97 39.67 29.54 68.60 2.03 41.69 15 11 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 12 H -0.27 -10.97 7.11 99.48 0.71 -10.26 15 13 H -0.28 -11.25 7.11 99.48 0.71 -10.54 15 14 C -0.15 -6.99 5.06 24.58 0.12 -6.87 15 15 C -0.18 -7.63 10.01 21.22 0.21 -7.42 15 16 C -0.15 -6.00 10.13 21.25 0.22 -5.78 15 17 C -0.28 -11.32 7.10 66.74 0.47 -10.85 15 18 Cl -0.06 -2.26 29.29 -2.72 -0.08 -2.34 15 19 S 0.31 13.86 18.49 -56.49 -1.04 12.82 15 20 H 0.10 2.61 8.14 -2.39 -0.02 2.59 15 21 H 0.04 1.27 8.14 -2.39 -0.02 1.25 15 22 H 0.03 1.05 8.14 -2.39 -0.02 1.03 15 23 H 0.02 0.82 8.14 -2.39 -0.02 0.80 15 24 H 0.07 3.27 5.95 -2.39 -0.01 3.25 15 25 H 0.29 12.97 8.31 -92.71 -0.77 12.20 15 26 H 0.14 5.05 8.06 -2.91 -0.02 5.03 15 27 H 0.13 4.47 8.06 -2.91 -0.02 4.45 15 Total: -1.00 -50.98 259.04 3.90 -47.08 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: 1.17 Total: 4.60 kcal Atomic # 6 Polarization: -46.22 SS G_CDS: 3.24 Total: -42.97 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.14 Total: -41.76 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -1.56 Total: -19.11 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.69 kcal Atomic # 16 Polarization: 13.86 SS G_CDS: -1.04 Total: 12.82 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.08 Total: -2.34 kcal Total: -50.98 3.90 -47.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259825680.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.980 kcal (2) G-P(sol) polarization free energy of solvation -50.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds