Wall clock time and date at job start Mon Mar 30 2020 05:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47000 * 305.00424 * 4 3 2 6 6 C 1.50689 * 109.47238 * 185.00206 * 4 3 2 7 7 H 1.08001 * 120.00291 * 239.99877 * 6 4 3 8 8 C 1.37883 * 120.00126 * 60.00156 * 6 4 3 9 9 N 1.31513 * 119.99829 * 359.97438 * 8 6 4 10 10 Si 1.86805 * 120.00128 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46882 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.46828 * 119.99630 * 10 8 6 13 13 H 1.48496 * 109.46953 * 240.00111 * 10 8 6 14 14 C 1.50699 * 109.47325 * 65.00178 * 4 3 2 15 15 C 1.33349 * 125.19185 * 240.00736 * 14 4 3 16 16 C 1.38466 * 114.93285 * 179.97438 * 15 14 4 17 17 C 1.33506 * 114.88611 * 359.97438 * 16 15 14 18 18 Cl 1.73596 * 125.21299 * 180.02562 * 17 16 15 19 19 S 1.75883 * 125.18896 * 59.69009 * 14 4 3 20 20 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 21 21 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 22 22 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 24 24 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 25 25 H 0.97001 * 119.99630 * 179.97438 * 9 8 6 26 26 H 1.07997 * 122.53435 * 359.97438 * 15 14 4 27 27 H 1.07998 * 122.55885 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5684 0.8427 6 6 4.1480 2.5558 0.1245 7 1 4.8007 2.9278 -0.6514 8 6 3.8752 3.3356 1.2285 9 7 3.0801 2.8828 2.1731 10 14 4.6339 5.0357 1.3817 11 1 5.4836 5.3074 0.1945 12 1 3.5556 6.0535 1.4626 13 1 5.4662 5.0974 2.6100 14 6 3.9894 0.5461 -1.2867 15 6 4.6711 -0.5961 -1.3795 16 6 4.9792 -0.9889 -2.6711 17 6 4.5461 -0.1641 -3.6274 18 17 4.7821 -0.3959 -5.3316 19 16 3.6940 1.1899 -2.8966 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6887 1.8463 -0.8899 24 1 1.6887 1.8463 0.8900 25 1 2.8885 3.4312 2.9499 26 1 4.9611 -1.1715 -0.5128 27 1 5.5272 -1.8938 -2.8883 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259825682.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:52 Heat of formation + Delta-G solvation = -29.525607 kcal Electronic energy + Delta-G solvation = -13579.177136 eV Core-core repulsion = 11068.578022 eV Total energy + Delta-G solvation = -2510.599114 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.022 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.69885 -36.82598 -36.06477 -33.80620 -30.96929 -27.39272 -26.16437 -24.28452 -23.26498 -20.82003 -18.80875 -17.01929 -16.28309 -15.29752 -15.29081 -14.62570 -14.44765 -14.02858 -13.15898 -12.83691 -12.62225 -12.42180 -11.98569 -11.42239 -11.22379 -10.98801 -10.87781 -10.73163 -10.51094 -10.24464 -9.96208 -9.87084 -9.49414 -8.87627 -8.43222 -7.87427 -7.73197 -6.24183 -4.34055 1.56349 1.73934 2.58516 2.81410 3.18875 3.27510 3.30921 3.36491 4.26110 4.76119 5.15855 5.66396 5.89709 5.95424 5.95937 6.08411 6.14272 6.45497 6.55473 6.78469 6.89404 6.98587 7.33221 7.48193 7.74105 7.95484 8.26844 8.70380 9.32716 10.80670 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.022330 B = 0.008145 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.610220 B = 3436.697743 C = 4245.108649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.401 6.401 3 C 0.063 3.937 4 C 0.109 3.891 5 H 0.060 0.940 6 C -0.518 4.518 7 H 0.068 0.932 8 C 0.066 3.934 9 N -0.885 5.885 10 Si 0.899 3.101 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.281 1.281 14 C -0.075 4.075 15 C -0.180 4.180 16 C -0.102 4.102 17 C -0.187 4.187 18 Cl -0.044 7.044 19 S 0.136 5.864 20 H 0.034 0.966 21 H 0.028 0.972 22 H 0.070 0.930 23 H 0.022 0.978 24 H 0.092 0.908 25 H 0.266 0.734 26 H 0.140 0.860 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.785 -4.454 -7.377 8.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.320 6.320 3 C -0.013 4.013 4 C 0.088 3.912 5 H 0.078 0.922 6 C -0.556 4.556 7 H 0.086 0.914 8 C -0.137 4.137 9 N -0.522 5.522 10 Si 0.726 3.274 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.207 1.207 14 C -0.194 4.194 15 C -0.207 4.207 16 C -0.135 4.135 17 C -0.330 4.330 18 Cl -0.016 7.016 19 S 0.398 5.602 20 H 0.052 0.948 21 H 0.047 0.953 22 H 0.089 0.911 23 H 0.040 0.960 24 H 0.109 0.891 25 H 0.076 0.924 26 H 0.157 0.843 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.447 -3.319 -7.943 8.730 hybrid contribution 0.884 -0.178 0.502 1.033 sum -0.562 -3.498 -7.441 8.241 Atomic orbital electron populations 1.22528 0.83436 1.00943 0.99115 1.87850 1.17741 1.31027 1.95389 1.23087 0.94987 0.82313 1.00922 1.17633 0.90247 0.96150 0.87138 0.92220 1.21086 1.29237 0.98960 1.06300 0.91404 1.25018 0.94749 0.98729 0.95211 1.69870 1.35460 1.37453 1.09427 0.86400 0.79213 0.83356 0.78415 1.19373 1.20750 1.20680 1.25358 0.99005 0.96641 0.98375 1.19853 1.05614 0.98561 0.96706 1.20050 1.01690 1.00151 0.91639 1.25069 1.14851 1.04905 0.88178 1.98293 1.96087 1.96515 1.10691 1.84267 1.54632 1.22479 0.98871 0.94781 0.95319 0.91141 0.96002 0.89052 0.92433 0.84260 0.84711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 11.01 101.05 1.11 1.75 15 2 O -0.40 -8.78 10.46 -35.23 -0.37 -9.15 15 3 C 0.06 1.48 5.12 37.16 0.19 1.67 15 4 C 0.11 2.64 2.39 -92.93 -0.22 2.41 15 5 H 0.06 1.57 8.08 -51.93 -0.42 1.15 15 6 C -0.52 -13.34 8.47 -34.44 -0.29 -13.63 15 7 H 0.07 1.75 7.74 -52.49 -0.41 1.35 15 8 C 0.07 1.70 5.29 -17.82 -0.09 1.61 15 9 N -0.88 -23.62 11.29 55.43 0.63 -23.00 15 10 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 15 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 14 C -0.08 -1.62 4.80 -36.02 -0.17 -1.80 15 15 C -0.18 -3.48 10.01 -41.21 -0.41 -3.89 15 16 C -0.10 -1.76 10.13 -41.15 -0.42 -2.18 15 17 C -0.19 -3.30 7.10 29.08 0.21 -3.09 15 18 Cl -0.04 -0.66 29.29 -51.86 -1.52 -2.18 15 19 S 0.14 2.63 22.87 -107.50 -2.46 0.17 15 20 H 0.03 0.57 8.14 -51.93 -0.42 0.14 15 21 H 0.03 0.46 8.14 -51.93 -0.42 0.03 15 22 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 23 H 0.02 0.50 7.82 -51.93 -0.41 0.09 15 24 H 0.09 2.33 5.95 -51.93 -0.31 2.02 15 25 H 0.27 6.73 8.31 -40.82 -0.34 6.40 15 26 H 0.14 2.52 8.06 -52.49 -0.42 2.09 15 27 H 0.14 1.96 8.06 -52.49 -0.42 1.54 15 LS Contribution 267.54 15.07 4.03 4.03 Total: -1.00 -26.46 267.54 -7.60 -34.06 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -2.79 Total: -1.91 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -0.10 Total: -17.15 kcal Atomic # 7 Polarization: -23.62 SS G_CDS: 0.63 Total: -23.00 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.37 Total: -9.15 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.46 Total: 0.17 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.52 Total: -2.18 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -26.46 -7.60 -34.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259825682.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.532 kcal (2) G-P(sol) polarization free energy of solvation -26.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds