Wall clock time and date at job start Mon Mar 30 2020 05:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 C 1.52996 * 109.47091 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47000 * 305.00424 * 4 3 2 6 6 C 1.50689 * 109.47238 * 185.00206 * 4 3 2 7 7 H 1.08001 * 120.00291 * 239.99877 * 6 4 3 8 8 C 1.37883 * 120.00126 * 60.00156 * 6 4 3 9 9 N 1.31513 * 119.99829 * 359.97438 * 8 6 4 10 10 Si 1.86805 * 120.00128 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46882 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.46828 * 119.99630 * 10 8 6 13 13 H 1.48496 * 109.46953 * 240.00111 * 10 8 6 14 14 C 1.50699 * 109.47325 * 65.00178 * 4 3 2 15 15 C 1.33349 * 125.19185 * 240.00736 * 14 4 3 16 16 C 1.38466 * 114.93285 * 179.97438 * 15 14 4 17 17 C 1.33506 * 114.88611 * 359.97438 * 16 15 14 18 18 Cl 1.73596 * 125.21299 * 180.02562 * 17 16 15 19 19 S 1.75883 * 125.18896 * 59.69009 * 14 4 3 20 20 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 21 21 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 22 22 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47036 * 300.00109 * 3 2 1 24 24 H 1.09002 * 109.46796 * 60.00253 * 3 2 1 25 25 H 0.97001 * 119.99630 * 179.97438 * 9 8 6 26 26 H 1.07997 * 122.53435 * 359.97438 * 15 14 4 27 27 H 1.07998 * 122.55885 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5684 0.8427 6 6 4.1480 2.5558 0.1245 7 1 4.8007 2.9278 -0.6514 8 6 3.8752 3.3356 1.2285 9 7 3.0801 2.8828 2.1731 10 14 4.6339 5.0357 1.3817 11 1 5.4836 5.3074 0.1945 12 1 3.5556 6.0535 1.4626 13 1 5.4662 5.0974 2.6100 14 6 3.9894 0.5461 -1.2867 15 6 4.6711 -0.5961 -1.3795 16 6 4.9792 -0.9889 -2.6711 17 6 4.5461 -0.1641 -3.6274 18 17 4.7821 -0.3959 -5.3316 19 16 3.6940 1.1899 -2.8966 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6887 1.8463 -0.8899 24 1 1.6887 1.8463 0.8900 25 1 2.8885 3.4312 2.9499 26 1 4.9611 -1.1715 -0.5128 27 1 5.5272 -1.8938 -2.8883 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259825682.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:52 Heat of formation + Delta-G solvation = -43.623561 kcal Electronic energy + Delta-G solvation = -13579.788469 eV Core-core repulsion = 11068.578022 eV Total energy + Delta-G solvation = -2511.210447 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.29097 -38.36801 -37.44921 -35.64433 -32.77881 -28.95563 -27.82055 -26.06540 -24.81156 -22.56920 -20.31814 -18.76374 -18.03545 -17.02106 -16.88112 -16.22924 -16.14181 -15.62100 -14.65375 -14.38475 -14.22804 -14.04231 -13.47712 -13.03300 -12.96225 -12.62862 -12.49711 -12.29257 -12.15523 -11.79899 -11.62082 -11.53495 -11.33195 -10.73334 -10.26113 -9.37182 -9.25427 -8.20007 -6.36817 0.07595 0.28732 1.10259 1.37764 1.41337 1.44671 1.55852 1.85907 2.39637 2.98827 3.33419 4.14324 4.49010 4.51729 4.56573 4.62517 4.65941 4.81465 4.94802 5.07936 5.27226 5.37335 5.48160 5.67850 5.77427 6.07722 6.54699 6.71551 7.32908 8.84250 Molecular weight = 246.02amu Principal moments of inertia in cm(-1) A = 0.022330 B = 0.008145 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.610220 B = 3436.697743 C = 4245.108649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.418 6.418 3 C 0.079 3.921 4 C 0.111 3.889 5 H 0.027 0.973 6 C -0.530 4.530 7 H 0.062 0.938 8 C 0.023 3.977 9 N -0.911 5.911 10 Si 0.958 3.042 11 H -0.267 1.267 12 H -0.277 1.277 13 H -0.278 1.278 14 C -0.114 4.114 15 C -0.172 4.172 16 C -0.101 4.101 17 C -0.180 4.180 18 Cl -0.015 7.015 19 S 0.127 5.873 20 H 0.035 0.965 21 H 0.041 0.959 22 H 0.100 0.900 23 H 0.021 0.979 24 H 0.066 0.934 25 H 0.267 0.733 26 H 0.146 0.854 27 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.419 -4.909 -8.761 10.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.337 6.337 3 C 0.002 3.998 4 C 0.090 3.910 5 H 0.045 0.955 6 C -0.568 4.568 7 H 0.080 0.920 8 C -0.177 4.177 9 N -0.549 5.549 10 Si 0.783 3.217 11 H -0.191 1.191 12 H -0.202 1.202 13 H -0.204 1.204 14 C -0.232 4.232 15 C -0.200 4.200 16 C -0.133 4.133 17 C -0.323 4.323 18 Cl 0.013 6.987 19 S 0.389 5.611 20 H 0.053 0.947 21 H 0.059 0.941 22 H 0.118 0.882 23 H 0.039 0.961 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.164 0.836 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.089 -3.780 -9.336 10.131 hybrid contribution 0.748 -0.137 0.845 1.137 sum -0.341 -3.917 -8.490 9.357 Atomic orbital electron populations 1.22806 0.80967 1.03178 0.99784 1.87804 1.20461 1.30004 1.95462 1.22717 0.94809 0.82786 0.99460 1.17380 0.90748 0.95097 0.87743 0.95529 1.21292 1.29294 0.99968 1.06264 0.91974 1.25728 0.95114 1.01941 0.94927 1.69983 1.36401 1.38659 1.09849 0.85492 0.78499 0.79417 0.78306 1.19074 1.20210 1.20397 1.25079 1.01606 0.98169 0.98317 1.20111 1.04099 0.97656 0.98156 1.20262 1.01557 1.01142 0.90352 1.25161 1.13566 1.03743 0.89805 1.98309 1.95844 1.96274 1.08281 1.84170 1.55375 1.23628 0.97918 0.94659 0.94064 0.88153 0.96057 0.91640 0.92329 0.83592 0.81403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 11.01 113.37 1.25 2.22 15 2 O -0.42 -18.38 10.46 -148.98 -1.56 -19.93 15 3 C 0.08 3.79 5.12 71.98 0.37 4.16 15 4 C 0.11 5.51 2.39 -12.29 -0.03 5.48 15 5 H 0.03 1.47 8.08 -2.39 -0.02 1.45 15 6 C -0.53 -27.88 8.47 25.60 0.22 -27.66 15 7 H 0.06 3.26 7.74 -2.91 -0.02 3.23 15 8 C 0.02 1.22 5.29 84.66 0.45 1.67 15 9 N -0.91 -49.72 11.29 21.45 0.24 -49.48 15 10 Si 0.96 41.52 29.54 68.60 2.03 43.54 15 11 H -0.27 -11.32 7.11 99.48 0.71 -10.62 15 12 H -0.28 -11.68 7.11 99.48 0.71 -10.98 15 13 H -0.28 -11.87 7.11 99.48 0.71 -11.16 15 14 C -0.11 -4.89 4.80 24.58 0.12 -4.78 15 15 C -0.17 -6.49 10.01 21.22 0.21 -6.27 15 16 C -0.10 -3.22 10.13 21.25 0.22 -3.01 15 17 C -0.18 -5.91 7.10 66.75 0.47 -5.44 15 18 Cl -0.02 -0.42 29.29 -2.72 -0.08 -0.50 15 19 S 0.13 4.84 22.87 -56.49 -1.29 3.54 15 20 H 0.03 1.16 8.14 -2.39 -0.02 1.14 15 21 H 0.04 1.27 8.14 -2.38 -0.02 1.25 15 22 H 0.10 2.73 8.14 -2.39 -0.02 2.71 15 23 H 0.02 1.00 7.82 -2.39 -0.02 0.98 15 24 H 0.07 3.46 5.95 -2.39 -0.01 3.45 15 25 H 0.27 13.79 8.31 -92.71 -0.77 13.02 15 26 H 0.15 5.19 8.06 -2.91 -0.02 5.16 15 27 H 0.17 4.23 8.06 -2.91 -0.02 4.21 15 Total: -1.00 -56.39 267.54 3.78 -52.61 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: 1.17 Total: 3.85 kcal Atomic # 6 Polarization: -36.90 SS G_CDS: 3.27 Total: -33.63 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.24 Total: -49.48 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -1.56 Total: -19.93 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.54 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -1.29 Total: 3.54 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.50 kcal Total: -56.39 3.78 -52.61 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259825682.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.982 kcal (2) G-P(sol) polarization free energy of solvation -56.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds