Wall clock time and date at job start Mon Mar 30 2020 06:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00466 * 2 1 4 4 H 1.48501 * 109.47285 * 264.84634 * 3 2 1 5 5 H 1.48501 * 109.47089 * 24.84417 * 3 2 1 6 6 H 1.48495 * 109.47483 * 144.84258 * 3 2 1 7 7 C 1.37880 * 119.99407 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00345 * 4.30089 * 7 2 1 9 9 C 1.50703 * 119.99589 * 184.29809 * 7 2 1 10 10 H 1.09003 * 110.68400 * 332.17370 * 9 7 2 11 11 C 1.54340 * 110.76705 * 95.44694 * 9 7 2 12 12 C 1.51326 * 105.22340 * 145.02044 * 11 9 7 13 13 N 1.31035 * 142.36068 * 162.78802 * 12 11 9 14 14 N 1.40026 * 108.24566 * 179.71883 * 13 12 11 15 15 H 0.96997 * 126.03152 * 180.26999 * 14 13 12 16 16 C 1.34885 * 107.93564 * 0.43026 * 14 13 12 17 17 C 1.50701 * 126.11159 * 179.84992 * 16 14 13 18 18 F 1.39897 * 109.47238 * 359.68414 * 17 16 14 19 19 F 1.39904 * 109.46856 * 239.68355 * 17 16 14 20 20 F 1.39904 * 109.47202 * 119.68589 * 17 16 14 21 21 C 1.35462 * 107.77506 * 359.57640 * 16 14 13 22 22 C 1.51279 * 142.53371 * 180.25991 * 21 16 14 23 23 H 0.96996 * 119.99242 * 359.97438 * 1 2 3 24 24 H 1.08998 * 110.29897 * 26.08282 * 11 9 7 25 25 H 1.09008 * 110.37399 * 263.99575 * 11 9 7 26 26 H 1.09007 * 110.29158 * 316.16557 * 22 21 16 27 27 H 1.08997 * 110.29335 * 78.29182 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6058 1.9834 -1.3944 5 1 1.3966 2.6816 0.5882 6 1 3.4881 1.4739 0.8061 7 6 2.0045 -1.1941 0.0005 8 1 1.4667 -2.1281 -0.0692 9 6 3.5083 -1.1960 0.0984 10 1 3.9224 -0.2776 -0.3180 11 6 3.9613 -1.3867 1.5614 12 6 5.2278 -2.2111 1.4810 13 7 6.2829 -2.5625 2.1739 14 7 7.0666 -3.4092 1.3804 15 1 7.9044 -3.8222 1.6417 16 6 6.4526 -3.5462 0.1873 17 6 6.9454 -4.3676 -0.9761 18 9 8.1594 -4.9747 -0.6373 19 9 7.1329 -3.5377 -2.0867 20 9 6.0013 -5.3530 -1.2844 21 6 5.3107 -2.8184 0.2238 22 6 4.1052 -2.4332 -0.6051 23 1 -0.4849 0.8401 0.0004 24 1 3.1979 -1.9208 2.1270 25 1 4.1674 -0.4213 2.0238 26 1 4.4099 -2.1807 -1.6208 27 1 3.3800 -3.2468 -0.6184 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259827721.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:02 Heat of formation + Delta-G solvation = -76.075411 kcal Electronic energy + Delta-G solvation = -17809.324334 eV Core-core repulsion = 14346.822659 eV Total energy + Delta-G solvation = -3462.501675 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.26118 -47.84053 -47.69313 -41.42708 -36.18573 -32.46434 -31.61775 -29.56752 -27.16299 -25.99236 -24.63193 -20.95051 -19.98703 -19.61379 -18.60796 -18.30470 -17.92554 -17.13394 -15.99321 -15.00236 -14.65132 -14.50896 -14.22689 -14.17326 -13.89674 -13.88032 -13.58150 -13.11751 -12.93484 -12.60569 -12.06128 -11.76453 -11.21304 -10.91524 -10.46038 -10.30254 -10.03549 -9.81862 -9.39353 -9.17863 -8.63559 -8.27476 -6.17938 -4.19573 1.52404 2.21502 2.83153 2.87637 3.25048 3.34253 3.35259 3.65176 3.98977 4.28283 4.31090 4.34382 5.18256 5.44147 5.60485 5.77000 6.03243 6.31555 6.54428 6.54981 6.63803 6.67812 7.00640 7.13424 7.25318 7.61538 7.73235 8.41536 8.87697 9.43859 10.94257 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.035860 B = 0.006762 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.628426 B = 4139.713661 C = 4415.167339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.076 3.924 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.511 4.511 8 H 0.080 0.920 9 C 0.027 3.973 10 H 0.045 0.955 11 C -0.041 4.041 12 C 0.067 3.933 13 N -0.253 5.253 14 N -0.462 5.462 15 H 0.441 0.559 16 C -0.028 4.028 17 C 0.544 3.456 18 F -0.183 7.183 19 F -0.164 7.164 20 F -0.164 7.164 21 C -0.168 4.168 22 C -0.043 4.043 23 H 0.266 0.734 24 H 0.095 0.905 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.613 -6.593 -0.672 15.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.128 4.128 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.549 4.549 8 H 0.098 0.902 9 C 0.007 3.993 10 H 0.063 0.937 11 C -0.081 4.081 12 C -0.100 4.100 13 N -0.076 5.076 14 N -0.174 5.174 15 H 0.286 0.714 16 C -0.154 4.154 17 C 0.488 3.512 18 F -0.165 7.165 19 F -0.146 7.146 20 F -0.145 7.145 21 C -0.181 4.181 22 C -0.081 4.081 23 H 0.076 0.924 24 H 0.114 0.886 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.053 -6.389 0.397 15.443 hybrid contribution 0.760 0.346 -0.725 1.106 sum 14.813 -6.043 -0.328 16.002 Atomic orbital electron populations 1.69895 1.06367 1.27306 1.49325 1.25079 0.94714 0.99102 0.93879 0.86886 0.80283 0.83575 0.79007 1.19967 1.21421 1.18795 1.20903 0.87918 0.94871 1.51164 0.90225 1.19881 0.97003 0.93432 0.88972 0.93653 1.21571 0.87055 0.96625 1.02861 1.24103 0.95530 0.97967 0.92379 1.77103 1.05107 1.09551 1.15856 1.46142 1.22087 1.40643 1.08498 0.71365 1.19759 0.98676 1.07002 0.89962 1.17279 0.74620 0.77558 0.81733 1.93168 1.46488 1.84513 1.92295 1.93255 1.94939 1.71730 1.54632 1.93260 1.64670 1.62960 1.93597 1.21352 0.96517 1.00031 1.00213 1.20899 0.90047 1.00047 0.97119 0.92381 0.88640 0.91291 0.91594 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.96 55.43 0.77 -24.91 15 2 C 0.08 2.02 5.47 -17.82 -0.10 1.92 15 3 Si 0.88 20.14 26.99 -169.99 -4.59 15.56 15 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 15 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.26 -5.76 6.71 56.52 0.38 -5.38 15 7 C -0.51 -13.12 8.82 -34.44 -0.30 -13.42 15 8 H 0.08 2.21 7.92 -52.49 -0.42 1.80 15 9 C 0.03 0.58 2.53 -90.37 -0.23 0.35 15 10 H 0.05 0.99 5.59 -51.93 -0.29 0.70 15 11 C -0.04 -0.82 6.30 -26.87 -0.17 -0.99 15 12 C 0.07 1.28 8.10 -82.02 -0.66 0.61 15 13 N -0.25 -4.50 12.70 33.86 0.43 -4.07 15 14 N -0.46 -6.79 7.24 33.49 0.24 -6.55 15 15 H 0.44 4.81 8.72 -182.66 -1.59 3.22 15 16 C -0.03 -0.43 6.47 -82.24 -0.53 -0.97 15 17 C 0.54 7.47 3.49 36.01 0.13 7.59 15 18 F -0.18 -2.19 16.98 2.25 0.04 -2.15 15 19 F -0.16 -2.33 17.30 2.25 0.04 -2.29 15 20 F -0.16 -2.32 17.30 2.25 0.04 -2.28 15 21 C -0.17 -3.07 6.78 -104.72 -0.71 -3.78 15 22 C -0.04 -0.82 6.30 -26.90 -0.17 -0.99 15 23 H 0.27 7.21 8.31 -40.82 -0.34 6.87 15 24 H 0.10 1.92 7.89 -51.93 -0.41 1.51 15 25 H 0.07 1.34 7.97 -51.92 -0.41 0.93 15 26 H 0.07 1.18 8.14 -51.92 -0.42 0.76 15 27 H 0.08 1.64 7.80 -51.93 -0.40 1.23 15 LS Contribution 249.99 15.07 3.77 3.77 Total: -1.00 -27.94 249.99 -5.11 -33.06 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -3.11 Total: -0.47 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -2.75 Total: -9.68 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 1.45 Total: -35.52 kcal Atomic # 9 Polarization: -6.83 SS G_CDS: 0.12 Total: -6.71 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.59 Total: 15.56 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.94 -5.11 -33.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259827721.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.018 kcal (2) G-P(sol) polarization free energy of solvation -27.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds