Wall clock time and date at job start Mon Mar 30 2020 06:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 120.00466 * 2 1 4 4 H 1.48501 * 109.47285 * 264.84634 * 3 2 1 5 5 H 1.48501 * 109.47089 * 24.84417 * 3 2 1 6 6 H 1.48495 * 109.47483 * 144.84258 * 3 2 1 7 7 C 1.37880 * 119.99407 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00345 * 4.30089 * 7 2 1 9 9 C 1.50703 * 119.99589 * 184.29809 * 7 2 1 10 10 H 1.09003 * 110.68400 * 332.17370 * 9 7 2 11 11 C 1.54340 * 110.76705 * 95.44694 * 9 7 2 12 12 C 1.51326 * 105.22340 * 145.02044 * 11 9 7 13 13 N 1.31035 * 142.36068 * 162.78802 * 12 11 9 14 14 N 1.40026 * 108.24566 * 179.71883 * 13 12 11 15 15 H 0.96997 * 126.03152 * 180.26999 * 14 13 12 16 16 C 1.34885 * 107.93564 * 0.43026 * 14 13 12 17 17 C 1.50701 * 126.11159 * 179.84992 * 16 14 13 18 18 F 1.39897 * 109.47238 * 359.68414 * 17 16 14 19 19 F 1.39904 * 109.46856 * 239.68355 * 17 16 14 20 20 F 1.39904 * 109.47202 * 119.68589 * 17 16 14 21 21 C 1.35462 * 107.77506 * 359.57640 * 16 14 13 22 22 C 1.51279 * 142.53371 * 180.25991 * 21 16 14 23 23 H 0.96996 * 119.99242 * 359.97438 * 1 2 3 24 24 H 1.08998 * 110.29897 * 26.08282 * 11 9 7 25 25 H 1.09008 * 110.37399 * 263.99575 * 11 9 7 26 26 H 1.09007 * 110.29158 * 316.16557 * 22 21 16 27 27 H 1.08997 * 110.29335 * 78.29182 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6058 1.9834 -1.3944 5 1 1.3966 2.6816 0.5882 6 1 3.4881 1.4739 0.8061 7 6 2.0045 -1.1941 0.0005 8 1 1.4667 -2.1281 -0.0692 9 6 3.5083 -1.1960 0.0984 10 1 3.9224 -0.2776 -0.3180 11 6 3.9613 -1.3867 1.5614 12 6 5.2278 -2.2111 1.4810 13 7 6.2829 -2.5625 2.1739 14 7 7.0666 -3.4092 1.3804 15 1 7.9044 -3.8222 1.6417 16 6 6.4526 -3.5462 0.1873 17 6 6.9454 -4.3676 -0.9761 18 9 8.1594 -4.9747 -0.6373 19 9 7.1329 -3.5377 -2.0867 20 9 6.0013 -5.3530 -1.2844 21 6 5.3107 -2.8184 0.2238 22 6 4.1052 -2.4332 -0.6051 23 1 -0.4849 0.8401 0.0004 24 1 3.1979 -1.9208 2.1270 25 1 4.1674 -0.4213 2.0238 26 1 4.4099 -2.1807 -1.6208 27 1 3.3800 -3.2468 -0.6184 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259827721.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:02 Heat of formation + Delta-G solvation = -93.260516 kcal Electronic energy + Delta-G solvation = -17810.069536 eV Core-core repulsion = 14346.822659 eV Total energy + Delta-G solvation = -3463.246877 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.35205 -48.89498 -48.81280 -42.80877 -37.77977 -34.41622 -32.98581 -31.12695 -28.59548 -27.63533 -26.12091 -22.49677 -21.36571 -21.00056 -19.71696 -19.58357 -19.28077 -18.97656 -17.34045 -16.50814 -16.02511 -15.70839 -15.60977 -15.25482 -15.12871 -14.97408 -14.97248 -14.62535 -14.60541 -14.32962 -13.60741 -13.11280 -12.95302 -12.66564 -12.15193 -11.80649 -11.70063 -11.64155 -11.22292 -10.66687 -10.64054 -9.67328 -8.23757 -6.29321 0.20149 0.99753 1.37472 1.44235 1.46574 1.55645 1.71942 2.41425 2.48094 2.76317 2.92804 3.15661 3.23359 3.99825 4.19328 4.24943 4.40398 4.76329 4.96821 4.98339 5.08056 5.15753 5.39921 5.48598 5.69404 6.02689 6.35524 6.37735 6.79297 7.37569 8.92057 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.035860 B = 0.006762 C = 0.006340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.628426 B = 4139.713661 C = 4415.167339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.020 3.980 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.291 1.291 6 H -0.242 1.242 7 C -0.508 4.508 8 H 0.043 0.957 9 C 0.023 3.977 10 H 0.050 0.950 11 C -0.035 4.035 12 C 0.053 3.947 13 N -0.259 5.259 14 N -0.437 5.437 15 H 0.460 0.540 16 C -0.009 4.009 17 C 0.555 3.445 18 F -0.168 7.168 19 F -0.164 7.164 20 F -0.165 7.165 21 C -0.191 4.191 22 C -0.036 4.036 23 H 0.267 0.733 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.354 -6.643 -0.681 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.217 1.217 6 H -0.166 1.166 7 C -0.546 4.546 8 H 0.061 0.939 9 C 0.003 3.997 10 H 0.068 0.932 11 C -0.075 4.075 12 C -0.113 4.113 13 N -0.083 5.083 14 N -0.151 5.151 15 H 0.309 0.691 16 C -0.138 4.138 17 C 0.498 3.502 18 F -0.149 7.149 19 F -0.145 7.145 20 F -0.146 7.146 21 C -0.204 4.204 22 C -0.075 4.075 23 H 0.076 0.924 24 H 0.104 0.896 25 H 0.093 0.907 26 H 0.096 0.904 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.839 -6.462 0.402 18.041 hybrid contribution -0.028 0.210 -0.708 0.738 sum 16.810 -6.252 -0.305 17.938 Atomic orbital electron populations 1.70040 1.08285 1.28207 1.51791 1.25885 0.95325 1.02839 0.93783 0.85902 0.79590 0.78889 0.79596 1.19147 1.21715 1.16557 1.21087 0.90180 0.93385 1.49931 0.93913 1.19806 0.94293 0.94895 0.90700 0.93196 1.21218 0.87805 0.97239 1.01247 1.23777 0.95737 0.98769 0.93049 1.77054 1.04971 1.10092 1.16218 1.46142 1.22147 1.39129 1.07703 0.69050 1.19906 0.97612 1.05749 0.90538 1.16954 0.75003 0.77273 0.80929 1.93209 1.45396 1.84144 1.92135 1.93264 1.94942 1.71830 1.54463 1.93268 1.64926 1.62896 1.93509 1.21186 0.97400 1.01942 0.99854 1.20654 0.90493 0.98610 0.97698 0.92423 0.89638 0.90687 0.90450 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.01 13.96 21.45 0.30 -55.71 15 2 C 0.02 1.08 5.47 84.65 0.46 1.55 15 3 Si 0.94 41.21 26.99 68.60 1.85 43.06 15 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 5 H -0.29 -12.86 7.11 99.48 0.71 -12.16 15 6 H -0.24 -9.74 6.71 99.48 0.67 -9.07 15 7 C -0.51 -26.68 8.82 25.60 0.23 -26.46 15 8 H 0.04 2.49 7.92 -2.91 -0.02 2.47 15 9 C 0.02 0.97 2.53 -10.63 -0.03 0.94 15 10 H 0.05 2.09 5.59 -2.39 -0.01 2.08 15 11 C -0.04 -1.38 6.30 30.50 0.19 -1.19 15 12 C 0.05 1.90 8.10 43.27 0.35 2.25 15 13 N -0.26 -8.53 12.70 -46.80 -0.59 -9.13 15 14 N -0.44 -11.36 7.24 -47.95 -0.35 -11.71 15 15 H 0.46 8.19 8.72 -213.37 -1.86 6.32 15 16 C -0.01 -0.27 6.47 41.45 0.27 0.00 15 17 C 0.55 13.45 3.49 71.24 0.25 13.70 15 18 F -0.17 -3.36 16.98 44.97 0.76 -2.60 15 19 F -0.16 -4.14 17.30 44.97 0.78 -3.36 15 20 F -0.16 -4.24 17.30 44.97 0.78 -3.46 15 21 C -0.19 -6.59 6.78 -19.93 -0.14 -6.73 15 22 C -0.04 -1.37 6.30 30.48 0.19 -1.17 15 23 H 0.27 14.88 8.31 -92.71 -0.77 14.11 15 24 H 0.09 3.47 7.89 -2.39 -0.02 3.45 15 25 H 0.07 2.80 7.97 -2.38 -0.02 2.78 15 26 H 0.08 2.67 8.14 -2.38 -0.02 2.66 15 27 H 0.07 2.91 7.80 -2.39 -0.02 2.89 15 Total: -1.00 -59.76 249.99 4.64 -55.12 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -0.66 Total: 4.90 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 1.78 Total: -17.11 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -0.64 Total: -76.54 kcal Atomic # 9 Polarization: -11.74 SS G_CDS: 2.32 Total: -9.42 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.85 Total: 43.06 kcal Total: -59.76 4.64 -55.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259827721.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.145 kcal (2) G-P(sol) polarization free energy of solvation -59.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds