Wall clock time and date at job start Mon Mar 30 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.68971 * 59.29847 * 9 7 2 11 11 C 1.54340 * 110.76506 * 296.02314 * 9 7 2 12 12 C 1.51611 * 105.07974 * 215.30328 * 11 9 7 13 13 N 1.31048 * 142.28242 * 197.23182 * 12 11 9 14 14 N 1.40012 * 108.24415 * 179.75033 * 13 12 11 15 15 H 0.97007 * 126.03191 * 180.02562 * 14 13 12 16 16 C 1.34890 * 107.94268 * 0.02562 * 14 13 12 17 17 C 1.50698 * 126.11523 * 180.02562 * 16 14 13 18 18 F 1.39899 * 109.47366 * 359.95368 * 17 16 14 19 19 F 1.39897 * 109.47192 * 119.95307 * 17 16 14 20 20 F 1.39905 * 109.46845 * 239.95447 * 17 16 14 21 21 C 1.35459 * 107.76963 * 359.97438 * 16 14 13 22 22 C 1.51284 * 142.53243 * 180.02562 * 21 16 14 23 23 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 24 24 H 1.08999 * 110.29728 * 334.10855 * 11 9 7 25 25 H 1.09001 * 110.28935 * 96.23967 * 11 9 7 26 26 H 1.09008 * 110.29239 * 43.82796 * 22 21 16 27 27 H 1.09002 * 110.38045 * 281.73969 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6079 -2.5717 -0.8788 11 6 0.4286 -2.6573 1.2947 12 6 0.4791 -4.1382 1.6157 13 7 -0.1123 -5.0651 2.3288 14 7 0.5346 -6.2831 2.0875 15 1 0.3058 -7.1389 2.4829 16 6 1.5322 -6.0568 1.2082 17 6 2.4885 -7.0872 0.6653 18 9 2.1882 -8.3379 1.2157 19 9 2.3663 -7.1490 -0.7270 20 9 3.7986 -6.7314 1.0032 21 6 1.5200 -4.7379 0.8997 22 6 2.2263 -3.6939 0.0631 23 1 -0.4850 -0.8401 -0.0004 24 1 0.8804 -2.0807 2.1018 25 1 -0.6005 -2.3376 1.1308 26 1 2.4193 -4.0790 -0.9383 27 1 3.1602 -3.3944 0.5388 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259827723.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:04 Heat of formation + Delta-G solvation = -80.926394 kcal Electronic energy + Delta-G solvation = -17836.278005 eV Core-core repulsion = 14373.565976 eV Total energy + Delta-G solvation = -3462.712030 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.26607 -47.84288 -47.70110 -41.39039 -36.28176 -32.52528 -31.59787 -29.01123 -27.06361 -25.75897 -24.30957 -21.37694 -20.09308 -19.59620 -18.61336 -18.30804 -17.89309 -16.93934 -15.89818 -15.03254 -14.65559 -14.52491 -14.18721 -13.90542 -13.88827 -13.77554 -13.76676 -13.35202 -13.04918 -11.99677 -11.90281 -11.48611 -11.28161 -10.86150 -10.46855 -10.23975 -10.12081 -9.80879 -9.23803 -8.66220 -8.48776 -8.23812 -6.42232 -4.17205 1.54741 2.22716 2.87170 2.89172 3.43088 3.43318 3.62455 3.65614 3.99588 4.28135 4.36604 4.48657 5.30780 5.48126 5.64607 5.80620 6.15716 6.32197 6.59156 6.61591 6.68462 6.74879 7.05852 7.21489 7.45404 7.77061 8.08390 8.34804 8.78107 9.54791 10.95495 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.039582 B = 0.006325 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.229201 B = 4425.965406 C = 4843.223487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.023 3.977 3 Si 1.068 2.932 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.596 4.596 8 H 0.056 0.944 9 C 0.044 3.956 10 H 0.035 0.965 11 C -0.032 4.032 12 C 0.069 3.931 13 N -0.253 5.253 14 N -0.462 5.462 15 H 0.441 0.559 16 C -0.028 4.028 17 C 0.545 3.455 18 F -0.183 7.183 19 F -0.165 7.165 20 F -0.164 7.164 21 C -0.169 4.169 22 C -0.040 4.040 23 H 0.272 0.728 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.731 -12.461 1.946 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.182 4.182 3 Si 0.896 3.104 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.634 4.634 8 H 0.075 0.925 9 C 0.025 3.975 10 H 0.053 0.947 11 C -0.072 4.072 12 C -0.098 4.098 13 N -0.076 5.076 14 N -0.174 5.174 15 H 0.286 0.714 16 C -0.155 4.155 17 C 0.488 3.512 18 F -0.164 7.164 19 F -0.146 7.146 20 F -0.146 7.146 21 C -0.182 4.182 22 C -0.078 4.078 23 H 0.084 0.916 24 H 0.107 0.893 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.626 -11.096 2.755 11.730 hybrid contribution 0.807 -2.477 -0.290 2.622 sum 3.433 -13.573 2.465 14.216 Atomic orbital electron populations 1.70827 1.06868 1.31045 1.45561 1.25836 0.96480 1.02663 0.93257 0.83542 0.74924 0.75288 0.76632 1.20800 1.21358 1.21360 1.21906 0.94277 0.90604 1.56566 0.92537 1.19619 0.92627 0.93266 0.92030 0.94692 1.21461 1.02240 0.82198 1.01308 1.24287 0.93339 0.98938 0.93205 1.77115 1.18470 0.89201 1.22802 1.46158 1.24660 1.10404 1.36172 0.71397 1.19743 0.97826 0.94583 1.03301 1.17277 0.79373 0.78525 0.75984 1.93168 1.93143 1.44508 1.85607 1.93252 1.95842 1.96245 1.29241 1.93254 1.37576 1.91656 1.92085 1.21314 1.01949 0.90893 1.04006 1.20819 0.99140 0.91418 0.96455 0.91614 0.89278 0.90898 0.91972 0.90137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.55 13.45 55.43 0.75 -24.80 15 2 C 0.02 0.61 5.35 -17.82 -0.10 0.51 15 3 Si 1.07 23.69 29.90 -169.99 -5.08 18.61 15 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 5 H -0.29 -6.11 7.11 56.52 0.40 -5.71 15 6 H -0.29 -6.12 7.11 56.52 0.40 -5.72 15 7 C -0.60 -15.39 8.39 -34.44 -0.29 -15.68 15 8 H 0.06 1.44 7.63 -52.49 -0.40 1.04 15 9 C 0.04 1.02 2.57 -90.35 -0.23 0.79 15 10 H 0.04 0.86 8.01 -51.93 -0.42 0.45 15 11 C -0.03 -0.71 5.42 -26.73 -0.14 -0.85 15 12 C 0.07 1.41 8.11 -81.87 -0.66 0.75 15 13 N -0.25 -4.79 12.70 33.93 0.43 -4.36 15 14 N -0.46 -7.18 7.24 33.49 0.24 -6.94 15 15 H 0.44 5.13 8.72 -182.66 -1.59 3.54 15 16 C -0.03 -0.46 6.47 -82.24 -0.53 -1.00 15 17 C 0.54 7.74 3.49 36.00 0.13 7.87 15 18 F -0.18 -2.26 16.98 2.25 0.04 -2.22 15 19 F -0.16 -2.41 17.30 2.25 0.04 -2.37 15 20 F -0.16 -2.39 17.30 2.25 0.04 -2.35 15 21 C -0.17 -3.25 6.78 -104.72 -0.71 -3.96 15 22 C -0.04 -0.81 6.30 -26.88 -0.17 -0.98 15 23 H 0.27 7.52 5.57 -40.82 -0.23 7.29 15 24 H 0.09 2.05 7.89 -51.93 -0.41 1.64 15 25 H 0.07 1.64 6.88 -51.93 -0.36 1.29 15 26 H 0.06 1.17 8.14 -51.92 -0.42 0.75 15 27 H 0.08 1.62 7.77 -51.93 -0.40 1.21 15 LS Contribution 249.68 15.07 3.76 3.76 Total: -1.00 -27.88 249.68 -5.52 -33.40 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -3.02 Total: -0.18 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -2.71 Total: -12.55 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 1.42 Total: -36.10 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.12 Total: -6.94 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -5.08 Total: 18.61 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.88 -5.52 -33.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259827723.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.528 kcal (2) G-P(sol) polarization free energy of solvation -27.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds