Wall clock time and date at job start Mon Mar 30 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.68971 * 59.29847 * 9 7 2 11 11 C 1.54340 * 110.76506 * 296.02314 * 9 7 2 12 12 C 1.51611 * 105.07974 * 215.30328 * 11 9 7 13 13 N 1.31048 * 142.28242 * 197.23182 * 12 11 9 14 14 N 1.40012 * 108.24415 * 179.75033 * 13 12 11 15 15 H 0.97007 * 126.03191 * 180.02562 * 14 13 12 16 16 C 1.34890 * 107.94268 * 0.02562 * 14 13 12 17 17 C 1.50698 * 126.11523 * 180.02562 * 16 14 13 18 18 F 1.39899 * 109.47366 * 359.95368 * 17 16 14 19 19 F 1.39897 * 109.47192 * 119.95307 * 17 16 14 20 20 F 1.39905 * 109.46845 * 239.95447 * 17 16 14 21 21 C 1.35459 * 107.76963 * 359.97438 * 16 14 13 22 22 C 1.51284 * 142.53243 * 180.02562 * 21 16 14 23 23 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 24 24 H 1.08999 * 110.29728 * 334.10855 * 11 9 7 25 25 H 1.09001 * 110.28935 * 96.23967 * 11 9 7 26 26 H 1.09008 * 110.29239 * 43.82796 * 22 21 16 27 27 H 1.09002 * 110.38045 * 281.73969 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6079 -2.5717 -0.8788 11 6 0.4286 -2.6573 1.2947 12 6 0.4791 -4.1382 1.6157 13 7 -0.1123 -5.0651 2.3288 14 7 0.5346 -6.2831 2.0875 15 1 0.3058 -7.1389 2.4829 16 6 1.5322 -6.0568 1.2082 17 6 2.4885 -7.0872 0.6653 18 9 2.1882 -8.3379 1.2157 19 9 2.3663 -7.1490 -0.7270 20 9 3.7986 -6.7314 1.0032 21 6 1.5200 -4.7379 0.8997 22 6 2.2263 -3.6939 0.0631 23 1 -0.4850 -0.8401 -0.0004 24 1 0.8804 -2.0807 2.1018 25 1 -0.6005 -2.3376 1.1308 26 1 2.4193 -4.0790 -0.9383 27 1 3.1602 -3.3944 0.5388 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259827723.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:04 Heat of formation + Delta-G solvation = -97.116899 kcal Electronic energy + Delta-G solvation = -17836.980078 eV Core-core repulsion = 14373.565976 eV Total energy + Delta-G solvation = -3463.414103 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.40091 -48.93979 -48.86102 -42.87835 -38.00770 -34.41478 -33.05506 -30.62486 -28.65905 -27.36816 -26.00138 -23.05643 -21.49816 -21.07836 -19.76244 -19.66201 -19.21913 -18.86425 -17.36217 -16.58651 -15.77789 -15.73958 -15.56396 -15.39407 -15.30001 -15.02099 -15.01850 -14.89014 -14.67679 -13.69840 -13.50290 -13.24591 -12.98066 -12.61821 -12.20370 -11.87849 -11.76948 -11.59838 -10.76624 -10.60076 -10.48521 -9.74925 -8.52590 -6.27937 0.13317 0.93682 1.29510 1.63210 1.65553 1.70006 1.88461 2.41756 2.64583 2.74003 2.90318 3.10764 3.29027 3.93048 4.13451 4.17735 4.39942 4.67570 4.87173 4.90801 5.02037 5.08162 5.31066 5.55373 5.96942 6.10371 6.25438 6.31141 6.69424 7.51926 8.86293 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.039582 B = 0.006325 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.229201 B = 4425.965406 C = 4843.223487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.024 4.024 3 Si 1.112 2.888 4 H -0.289 1.289 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.604 4.604 8 H 0.058 0.942 9 C 0.036 3.964 10 H 0.013 0.987 11 C -0.020 4.020 12 C 0.050 3.950 13 N -0.261 5.261 14 N -0.435 5.435 15 H 0.461 0.539 16 C -0.007 4.007 17 C 0.557 3.443 18 F -0.166 7.166 19 F -0.164 7.164 20 F -0.163 7.163 21 C -0.191 4.191 22 C -0.030 4.030 23 H 0.263 0.737 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.833 -13.934 2.259 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.223 4.223 3 Si 0.935 3.065 4 H -0.215 1.215 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.641 4.641 8 H 0.076 0.924 9 C 0.016 3.984 10 H 0.032 0.968 11 C -0.060 4.060 12 C -0.116 4.116 13 N -0.085 5.085 14 N -0.149 5.149 15 H 0.311 0.689 16 C -0.136 4.136 17 C 0.501 3.499 18 F -0.147 7.147 19 F -0.145 7.145 20 F -0.144 7.144 21 C -0.204 4.204 22 C -0.068 4.068 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.729 -12.610 3.081 13.506 hybrid contribution 0.437 -2.162 -0.358 2.235 sum 4.166 -14.772 2.723 15.588 Atomic orbital electron populations 1.70921 1.07868 1.30658 1.47869 1.27119 0.96531 1.06093 0.92600 0.82975 0.74122 0.71607 0.77842 1.21519 1.19685 1.19662 1.22246 0.94562 0.91775 1.55536 0.92414 1.19550 0.93181 0.93971 0.91654 0.96847 1.21026 1.00878 0.83880 1.00190 1.23857 0.94731 0.98247 0.94778 1.77054 1.18793 0.89915 1.22723 1.46144 1.23412 1.10432 1.34930 0.68947 1.19926 0.97460 0.94255 1.01985 1.16886 0.78747 0.78438 0.75862 1.93213 1.93001 1.43180 1.85338 1.93264 1.95805 1.96229 1.29193 1.93267 1.37320 1.91736 1.92076 1.21169 1.02290 0.91953 1.04968 1.20574 0.98174 0.90599 0.97440 0.92569 0.90879 0.92409 0.90870 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.04 13.45 21.45 0.29 -53.75 15 2 C -0.02 -1.29 5.35 84.66 0.45 -0.84 15 3 Si 1.11 47.59 29.90 68.60 2.05 49.64 15 4 H -0.29 -12.63 7.11 99.48 0.71 -11.93 15 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 15 6 H -0.27 -10.83 7.11 99.48 0.71 -10.13 15 7 C -0.60 -31.54 8.39 25.60 0.21 -31.32 15 8 H 0.06 2.94 7.63 -2.91 -0.02 2.91 15 9 C 0.04 1.70 2.57 -10.62 -0.03 1.67 15 10 H 0.01 0.69 8.01 -2.39 -0.02 0.67 15 11 C -0.02 -0.90 5.42 30.59 0.17 -0.73 15 12 C 0.05 2.01 8.11 43.36 0.35 2.36 15 13 N -0.26 -9.49 12.70 -46.57 -0.59 -10.08 15 14 N -0.44 -12.29 7.24 -47.95 -0.35 -12.64 15 15 H 0.46 9.03 8.72 -213.37 -1.86 7.17 15 16 C -0.01 -0.23 6.47 41.45 0.27 0.04 15 17 C 0.56 14.03 3.49 71.24 0.25 14.28 15 18 F -0.17 -3.46 16.98 44.97 0.76 -2.69 15 19 F -0.16 -4.30 17.30 44.97 0.78 -3.52 15 20 F -0.16 -4.24 17.30 44.97 0.78 -3.46 15 21 C -0.19 -7.12 6.78 -19.93 -0.14 -7.26 15 22 C -0.03 -1.19 6.30 30.50 0.19 -1.00 15 23 H 0.26 15.16 5.57 -92.71 -0.52 14.65 15 24 H 0.07 3.50 7.89 -2.39 -0.02 3.48 15 25 H 0.06 2.74 6.88 -2.39 -0.02 2.73 15 26 H 0.07 2.70 8.14 -2.38 -0.02 2.68 15 27 H 0.08 3.16 7.77 -2.39 -0.02 3.14 15 Total: -1.00 -59.15 249.68 5.08 -54.07 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -0.37 Total: 5.24 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 1.73 Total: -22.80 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -0.65 Total: -76.47 kcal Atomic # 9 Polarization: -12.00 SS G_CDS: 2.32 Total: -9.68 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.05 Total: 49.64 kcal Total: -59.15 5.08 -54.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259827723.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.051 kcal (2) G-P(sol) polarization free energy of solvation -59.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds