Wall clock time and date at job start Mon Mar 30 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 S 1.76179 * 126.06541 * 2 1 4 4 C 1.70913 * 90.44044 * 180.22220 * 3 2 1 5 5 N 1.28759 * 110.51317 * 359.81093 * 4 3 2 6 6 C 1.32561 * 117.13032 * 359.97438 * 5 4 3 7 7 C 1.48255 * 122.97181 * 180.02562 * 6 5 4 8 8 C 1.40103 * 120.82100 * 145.03066 * 7 6 5 9 9 C 1.38435 * 119.41567 * 180.02562 * 8 7 6 10 10 N 1.31511 * 121.15901 * 359.97438 * 9 8 7 11 11 C 1.33678 * 121.80676 * 0.02562 * 10 9 8 12 12 C 1.41435 * 119.78221 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00491 * 180.02562 * 12 11 10 14 14 C 1.40028 * 119.99610 * 359.72276 * 12 11 10 15 15 N 1.30744 * 120.00260 * 0.27911 * 14 12 11 16 16 Si 1.86803 * 119.99845 * 180.27344 * 14 12 11 17 17 H 1.48504 * 109.47118 * 60.00518 * 16 14 12 18 18 H 1.48504 * 109.47036 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47374 * 300.00624 * 16 14 12 20 20 C 1.39403 * 120.82910 * 325.30280 * 7 6 5 21 21 H 1.09008 * 109.46946 * 270.12050 * 1 2 3 22 22 H 1.08997 * 109.47301 * 30.11349 * 1 2 3 23 23 H 1.08991 * 109.47088 * 150.11912 * 1 2 3 24 24 H 1.07999 * 124.74487 * 179.83259 * 4 3 2 25 25 H 1.08001 * 120.29522 * 359.97438 * 8 7 6 26 26 H 1.08006 * 119.41670 * 179.97438 * 9 8 7 27 27 H 0.97000 * 119.99563 * 179.97438 * 15 14 12 28 28 H 1.07997 * 120.58909 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5442 1.4241 0.0000 4 6 3.9334 0.4286 -0.0066 5 7 3.5977 -0.8145 -0.0044 6 6 2.3012 -1.0905 0.0028 7 6 1.7711 -2.4750 0.0066 8 6 0.5974 -2.7923 0.7028 9 6 0.1286 -4.0948 0.6872 10 7 0.7655 -5.0393 0.0301 11 6 1.8890 -4.7898 -0.6499 12 6 2.5393 -5.8383 -1.3413 13 1 3.4475 -5.6408 -1.8914 14 6 2.0091 -7.1339 -1.3073 15 7 0.9100 -7.3732 -0.6409 16 14 2.8722 -8.5203 -2.2141 17 1 4.2478 -8.6815 -1.6782 18 1 2.1149 -9.7835 -2.0233 19 1 2.9397 -8.1981 -3.6621 20 6 2.4310 -3.4946 -0.6776 21 1 -0.3633 0.0022 1.0277 22 1 -0.3634 0.8889 -0.5156 23 1 -0.3633 -0.8910 -0.5119 24 1 4.9506 0.7914 -0.0116 25 1 0.0634 -2.0277 1.2474 26 1 -0.7759 -4.3395 1.2242 27 1 0.5426 -8.2706 -0.6177 28 1 3.3408 -3.2912 -1.2229 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259829967.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:24 Heat of formation + Delta-G solvation = 52.945320 kcal Electronic energy + Delta-G solvation = -14664.473487 eV Core-core repulsion = 12192.176182 eV Total energy + Delta-G solvation = -2472.297305 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.06108 -39.57345 -35.62654 -34.18280 -32.30067 -31.64801 -28.31738 -27.44477 -25.11464 -23.90476 -23.05936 -20.64584 -19.19393 -18.48528 -17.41673 -16.43190 -16.33977 -16.03065 -15.68519 -15.45213 -14.49510 -14.13000 -14.01170 -13.95369 -13.75126 -13.51292 -12.92790 -12.84302 -12.76420 -12.23152 -12.10752 -11.70550 -11.26374 -10.65727 -10.52265 -10.15712 -9.61018 -9.53355 -9.23552 -8.31265 -6.54142 -0.32299 0.42197 0.69584 0.87854 0.89537 1.38953 1.51755 1.52470 2.06910 2.22397 2.83860 3.33086 3.90828 3.96404 4.15769 4.21895 4.26583 4.66220 4.72761 4.81413 4.82329 4.96250 4.98254 5.16790 5.20815 5.44407 5.61127 5.82741 6.07468 6.23898 6.68737 6.83892 6.93349 8.15442 8.43688 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.041168 B = 0.005722 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.969220 B = 4892.045535 C = 5435.458455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.213 4.213 3 S 0.180 5.820 4 C 0.010 3.990 5 N -0.501 5.501 6 C 0.073 3.927 7 C 0.030 3.970 8 C -0.286 4.286 9 C 0.107 3.893 10 N -0.516 5.516 11 C 0.226 3.774 12 C -0.472 4.472 13 H 0.082 0.918 14 C 0.025 3.975 15 N -0.754 5.754 16 Si 0.988 3.012 17 H -0.261 1.261 18 H -0.263 1.263 19 H -0.259 1.259 20 C -0.263 4.263 21 H 0.093 0.907 22 H 0.093 0.907 23 H 0.070 0.930 24 H 0.232 0.768 25 H 0.136 0.864 26 H 0.148 0.852 27 H 0.281 0.719 28 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.317 14.089 0.851 14.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.335 4.335 3 S 0.433 5.567 4 C -0.289 4.289 5 N -0.215 5.215 6 C -0.056 4.056 7 C 0.021 3.979 8 C -0.309 4.309 9 C -0.057 4.057 10 N -0.230 5.230 11 C 0.101 3.899 12 C -0.504 4.504 13 H 0.100 0.900 14 C -0.196 4.196 15 N -0.376 5.376 16 Si 0.807 3.193 17 H -0.185 1.185 18 H -0.187 1.187 19 H -0.183 1.183 20 C -0.287 4.287 21 H 0.112 0.888 22 H 0.112 0.888 23 H 0.089 0.911 24 H 0.248 0.752 25 H 0.153 0.847 26 H 0.165 0.835 27 H 0.091 0.909 28 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.183 13.769 0.901 13.800 hybrid contribution 0.634 -0.787 -0.313 1.058 sum 0.817 12.983 0.588 13.022 Atomic orbital electron populations 1.20475 0.85135 1.03915 1.03954 1.26355 1.03029 0.94825 1.09266 1.83294 0.97098 1.08494 1.67766 1.28809 1.06055 0.90322 1.03685 1.66197 1.18010 1.21100 1.16147 1.18905 0.87461 0.94111 1.05140 1.18193 0.94381 0.89251 0.96033 1.21663 1.00450 0.98362 1.10437 1.22974 0.98301 0.89406 0.95030 1.68678 1.09236 1.33836 1.11249 1.18908 0.89327 0.91275 0.90369 1.19923 1.09228 0.93395 1.27820 0.89956 1.26972 0.95207 1.02132 0.95332 1.70208 1.16239 1.22458 1.28714 0.85192 0.78931 0.76050 0.79078 1.18485 1.18746 1.18312 1.21823 1.02923 0.94362 1.09602 0.88846 0.88842 0.91139 0.75182 0.84659 0.83460 0.90873 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.88 8.64 71.24 0.62 -1.26 15 2 C -0.21 -6.52 6.57 24.92 0.16 -6.36 15 3 S 0.18 3.93 23.21 -56.49 -1.31 2.62 15 4 C 0.01 0.25 12.20 130.69 1.59 1.85 15 5 N -0.50 -19.17 10.42 -192.78 -2.01 -21.18 15 6 C 0.07 2.91 6.41 40.93 0.26 3.17 15 7 C 0.03 1.44 5.62 -19.88 -0.11 1.33 15 8 C -0.29 -12.60 8.22 22.77 0.19 -12.41 15 9 C 0.11 5.21 11.16 84.79 0.95 6.16 15 10 N -0.52 -29.81 7.85 -189.40 -1.49 -31.30 15 11 C 0.23 13.33 6.55 40.18 0.26 13.59 15 12 C -0.47 -27.26 9.14 23.49 0.21 -27.05 15 13 H 0.08 4.52 7.85 -2.91 -0.02 4.50 15 14 C 0.03 1.34 5.50 85.29 0.47 1.81 15 15 N -0.75 -41.83 11.46 21.84 0.25 -41.58 15 16 Si 0.99 39.57 29.56 68.60 2.03 41.60 15 17 H -0.26 -10.16 7.11 99.48 0.71 -9.45 15 18 H -0.26 -9.84 7.11 99.48 0.71 -9.14 15 19 H -0.26 -10.02 7.11 99.48 0.71 -9.31 15 20 C -0.26 -14.39 9.51 23.08 0.22 -14.17 15 21 H 0.09 1.99 7.66 -2.38 -0.02 1.97 15 22 H 0.09 1.73 8.14 -2.39 -0.02 1.71 15 23 H 0.07 2.07 6.68 -2.39 -0.02 2.05 15 24 H 0.23 3.98 8.06 -2.91 -0.02 3.95 15 25 H 0.14 4.88 6.09 -2.91 -0.02 4.86 15 26 H 0.15 6.15 8.06 -2.91 -0.02 6.13 15 27 H 0.28 13.97 8.29 -92.71 -0.77 13.21 15 28 H 0.09 5.03 8.06 -2.91 -0.02 5.01 15 Total: -1.00 -71.16 262.22 3.48 -67.68 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 1.19 Total: 15.49 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 4.82 Total: -33.34 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -3.25 Total: -94.06 kcal Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.31 Total: 2.62 kcal Total: -71.16 3.48 -67.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259829967.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.627 kcal (2) G-P(sol) polarization free energy of solvation -71.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds