Wall clock time and date at job start Mon Mar 30 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38657 * 119.92178 * 2 1 4 4 C 1.37843 * 120.67304 * 180.02562 * 3 2 1 5 5 C 1.39126 * 120.04761 * 0.24535 * 4 3 2 6 6 O 1.34895 * 132.38493 * 180.46729 * 5 4 3 7 7 C 1.34562 * 111.60374 * 179.51781 * 6 5 4 8 8 C 1.46381 * 125.56508 * 179.73643 * 7 6 5 9 9 O 1.21652 * 119.99556 * 186.10070 * 8 7 6 10 10 O 1.34993 * 119.99909 * 6.10094 * 8 7 6 11 11 C 1.40577 * 108.86800 * 359.71749 * 7 6 5 12 12 C 1.40005 * 127.40653 * 180.02562 * 11 7 6 13 13 H 1.08005 * 119.99259 * 32.67598 * 12 11 7 14 14 C 1.40604 * 120.00483 * 212.67306 * 12 11 7 15 15 N 1.30469 * 119.99673 * 14.60300 * 14 12 11 16 16 Si 1.86801 * 120.00045 * 194.60185 * 14 12 11 17 17 H 1.48494 * 109.47003 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46854 * 120.00094 * 16 14 12 19 19 H 1.48503 * 109.46855 * 239.99729 * 16 14 12 20 20 C 1.40272 * 119.11789 * 359.44569 * 5 4 3 21 21 C 1.37896 * 119.91988 * 179.97438 * 2 1 3 22 22 H 1.09006 * 109.46821 * 89.99959 * 1 2 3 23 23 H 1.08996 * 109.47219 * 209.99704 * 1 2 3 24 24 H 1.08999 * 109.47354 * 330.00349 * 1 2 3 25 25 H 1.08003 * 119.66538 * 359.97438 * 3 2 1 26 26 H 1.08001 * 119.97466 * 179.97438 * 4 3 2 27 27 H 0.96706 * 113.99783 * 179.97438 * 10 8 7 28 28 H 0.97004 * 119.99799 * 174.93314 * 15 14 12 29 29 H 1.08003 * 120.17034 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1987 1.2017 0.0000 4 6 3.5770 1.2198 -0.0005 5 6 4.2894 0.0248 -0.0062 6 8 5.6108 -0.2462 0.0001 7 6 5.8448 -1.5713 0.0007 8 6 7.1655 -2.2026 0.0013 9 8 7.2624 -3.4102 -0.1102 10 8 8.2757 -1.4449 0.1257 11 6 4.6139 -2.2503 0.0009 12 6 4.4064 -3.6349 0.0020 13 1 5.1050 -4.2851 0.5077 14 6 3.2887 -4.1789 -0.6551 15 7 2.6076 -3.4498 -1.4958 16 14 2.7792 -5.9454 -0.3246 17 1 3.7083 -6.5522 0.6621 18 1 1.3972 -5.9685 0.2184 19 1 2.8264 -6.7194 -1.5910 20 6 3.5863 -1.1890 0.0005 21 6 2.1948 -1.1952 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6519 2.1332 -0.0004 26 1 4.1043 2.1624 -0.0009 27 1 9.1001 -1.9504 0.1158 28 1 1.8823 -3.8456 -2.0040 29 1 1.6563 -2.1314 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259865218.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:59 Heat of formation + Delta-G solvation = -85.364580 kcal Electronic energy + Delta-G solvation = -17353.824945 eV Core-core repulsion = 14400.484451 eV Total energy + Delta-G solvation = -2953.340495 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.74416 -38.58144 -37.07520 -35.01014 -34.36509 -31.34063 -31.18846 -28.89473 -26.56628 -25.58306 -23.44217 -20.99072 -20.51310 -19.63312 -17.38499 -17.15944 -16.19422 -15.91360 -15.06682 -14.87788 -14.38842 -13.87335 -13.79512 -13.20881 -13.01764 -12.83597 -12.57657 -12.23623 -11.70122 -11.57030 -11.35917 -11.19987 -10.79328 -10.78178 -10.47340 -10.41083 -9.86775 -9.68567 -9.35397 -8.71457 -7.45281 -7.34938 -7.01211 -4.73625 1.71367 2.27289 2.70691 2.91332 2.99786 3.10774 3.68790 3.90726 4.08988 4.53849 4.58645 4.97466 5.49981 5.56964 5.73488 5.90581 6.04669 6.14242 6.23842 6.38340 6.46297 6.72451 6.81508 6.82806 7.08717 7.26707 7.34573 7.42519 7.55039 7.69714 8.05942 8.25904 8.32265 8.61696 9.22389 9.73018 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.014819 B = 0.012879 C = 0.007071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.986140 B = 2173.623456 C = 3959.079209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.162 4.162 3 C -0.086 4.086 4 C -0.152 4.152 5 C 0.090 3.910 6 O -0.201 6.201 7 C -0.256 4.256 8 C 0.549 3.451 9 O -0.539 6.539 10 O -0.522 6.522 11 C 0.132 3.868 12 C -0.386 4.386 13 H 0.107 0.893 14 C 0.071 3.929 15 N -0.758 5.758 16 Si 0.922 3.078 17 H -0.253 1.253 18 H -0.267 1.267 19 H -0.268 1.268 20 C -0.132 4.132 21 C -0.007 4.007 22 H 0.058 0.942 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.390 0.610 28 H 0.292 0.708 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.017 2.890 1.588 5.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.162 4.162 3 C -0.104 4.104 4 C -0.171 4.171 5 C 0.040 3.960 6 O -0.106 6.106 7 C -0.302 4.302 8 C 0.403 3.597 9 O -0.435 6.435 10 O -0.332 6.332 11 C 0.127 3.873 12 C -0.412 4.412 13 H 0.125 0.875 14 C -0.153 4.153 15 N -0.381 5.381 16 Si 0.745 3.255 17 H -0.176 1.176 18 H -0.192 1.192 19 H -0.192 1.192 20 C -0.133 4.133 21 C -0.025 4.025 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.244 0.756 28 H 0.104 0.896 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.374 3.028 1.451 5.514 hybrid contribution 0.281 -1.006 -0.129 1.053 sum -4.093 2.022 1.322 4.752 Atomic orbital electron populations 1.20548 0.91938 1.01459 1.01263 1.19578 0.95410 0.93031 1.08216 1.20494 0.92473 0.97071 1.00387 1.19665 0.92988 0.94252 1.10194 1.19744 0.82718 0.95167 0.98371 1.83654 1.21659 1.25193 1.80077 1.19891 0.90956 0.79484 1.39833 1.18665 0.82034 0.83996 0.74971 1.90838 1.86306 1.14440 1.51955 1.85135 1.17401 1.43205 1.87446 1.18610 0.87233 0.92663 0.88787 1.19453 1.05095 0.91320 1.25318 0.87482 1.26316 0.93787 1.01681 0.93476 1.69667 1.15291 1.38370 1.14785 0.85996 0.79368 0.80068 0.80077 1.17562 1.19165 1.19233 1.19942 0.94024 0.92772 1.06578 1.20526 0.92062 0.97026 0.92906 0.92296 0.92431 0.92607 0.86434 0.86525 0.75631 0.89641 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 10.01 36.01 0.36 -1.03 15 2 C -0.16 -3.05 5.88 -104.59 -0.62 -3.66 15 3 C -0.09 -1.54 9.66 -39.57 -0.38 -1.92 15 4 C -0.15 -3.04 10.06 -39.40 -0.40 -3.44 15 5 C 0.09 2.18 7.35 -38.49 -0.28 1.90 15 6 O -0.20 -5.28 10.54 2.81 0.03 -5.25 15 7 C -0.26 -6.95 7.26 -35.43 -0.26 -7.21 15 8 C 0.55 13.84 8.27 34.01 0.28 14.12 15 9 O -0.54 -14.33 15.99 -19.38 -0.31 -14.64 15 10 O -0.52 -10.89 13.56 -43.00 -0.58 -11.47 15 11 C 0.13 3.59 5.76 -104.47 -0.60 2.99 15 12 C -0.39 -10.16 8.44 -38.03 -0.32 -10.48 15 13 H 0.11 2.87 7.04 -52.48 -0.37 2.50 15 14 C 0.07 1.68 5.08 -17.24 -0.09 1.59 15 15 N -0.76 -17.92 10.08 55.58 0.56 -17.36 15 16 Si 0.92 17.57 29.59 -169.99 -5.03 12.54 15 17 H -0.25 -4.89 7.11 56.52 0.40 -4.49 15 18 H -0.27 -4.84 7.11 56.52 0.40 -4.44 15 19 H -0.27 -5.01 7.11 56.52 0.40 -4.61 15 20 C -0.13 -3.32 5.78 -104.92 -0.61 -3.93 15 21 C -0.01 -0.16 8.40 -39.37 -0.33 -0.49 15 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.06 0.80 8.08 -51.93 -0.42 0.39 15 24 H 0.05 0.69 8.08 -51.93 -0.42 0.27 15 25 H 0.12 1.66 8.06 -52.48 -0.42 1.24 15 26 H 0.12 2.01 8.06 -52.49 -0.42 1.59 15 27 H 0.39 5.83 8.98 45.56 0.41 6.24 15 28 H 0.29 6.12 8.30 -40.82 -0.34 5.78 15 29 H 0.13 2.78 6.35 -52.48 -0.33 2.45 15 LS Contribution 264.14 15.07 3.98 3.98 Total: -1.00 -30.32 264.14 -6.13 -36.45 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -1.54 Total: 7.29 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -3.24 Total: -11.55 kcal Atomic # 7 Polarization: -17.92 SS G_CDS: 0.56 Total: -17.36 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.86 Total: -31.36 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.32 -6.13 -36.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865218.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.916 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds