Wall clock time and date at job start Mon Mar 30 2020 05:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86804 * 119.99970 * 2 1 4 4 H 1.48506 * 109.47006 * 274.98541 * 3 2 1 5 5 H 1.48499 * 109.46890 * 34.98332 * 3 2 1 6 6 H 1.48495 * 109.47485 * 154.98549 * 3 2 1 7 7 C 1.40117 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00199 * 186.71288 * 7 2 1 9 9 C 1.39417 * 120.00295 * 6.70450 * 7 2 1 10 10 S 1.75581 * 125.28173 * 353.50754 * 9 7 2 11 11 C 1.75452 * 91.38277 * 181.36865 * 10 9 7 12 12 C 1.34055 * 111.52032 * 0.05588 * 11 10 9 13 13 C 1.38691 * 125.30984 * 173.38333 * 9 7 2 14 14 C 1.48471 * 127.97501 * 356.63516 * 13 9 7 15 15 C 1.38999 * 132.69559 * 14.45575 * 14 13 9 16 16 N 1.31227 * 107.64537 * 178.46426 * 15 14 13 17 17 N 1.40416 * 108.98898 * 0.20188 * 16 15 14 18 18 H 0.97006 * 125.80029 * 180.71412 * 17 16 15 19 19 C 1.33714 * 108.39731 * 0.72920 * 17 16 15 20 20 C 1.50334 * 130.57667 * 178.39615 * 19 17 16 21 21 C 1.52075 * 124.68532 * 178.25701 * 12 11 10 22 22 H 0.96996 * 119.99971 * 0.02562 * 1 2 3 23 23 H 1.07990 * 124.23708 * 180.02562 * 11 10 9 24 24 H 1.08006 * 126.17476 * 358.48433 * 15 14 13 25 25 H 1.08999 * 109.11191 * 28.07539 * 20 19 17 26 26 H 1.09005 * 109.06218 * 268.98419 * 20 19 17 27 27 H 1.09004 * 109.04234 * 26.46896 * 21 12 11 28 28 H 1.08998 * 109.04413 * 267.51431 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3848 2.1073 -1.3948 5 1 1.4968 2.6200 0.8027 6 1 3.5890 1.4122 0.5920 7 6 2.0094 -1.2134 -0.0005 8 1 3.0839 -1.2166 0.1088 9 6 1.3196 -2.4167 -0.1420 10 16 -0.4278 -2.5871 -0.1668 11 6 -0.2981 -4.3295 -0.3263 12 6 0.9819 -4.7268 -0.3549 13 6 1.9065 -3.6648 -0.2875 14 6 3.3517 -3.9881 -0.3931 15 6 4.5031 -3.2553 -0.1298 16 7 5.5327 -4.0350 -0.3622 17 7 5.0685 -5.2905 -0.7864 18 1 5.6229 -6.0533 -1.0141 19 6 3.7323 -5.2559 -0.8234 20 6 2.7379 -6.3061 -1.2337 21 6 1.4367 -6.1751 -0.4471 22 1 -0.4850 0.8400 -0.0004 23 1 -1.1435 -4.9982 -0.3926 24 1 4.5431 -2.2295 0.2059 25 1 3.1658 -7.2924 -1.0540 26 1 2.5245 -6.1982 -2.2972 27 1 0.6615 -6.7604 -0.9418 28 1 1.5886 -6.5649 0.5594 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259868166.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:40 Heat of formation + Delta-G solvation = 73.441628 kcal Electronic energy + Delta-G solvation = -15140.425692 eV Core-core repulsion = 12669.017174 eV Total energy + Delta-G solvation = -2471.408519 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.39502 -36.57722 -34.37238 -32.60360 -30.36569 -29.70030 -27.71472 -24.54297 -23.78016 -21.41509 -20.49564 -19.30481 -17.83180 -16.47395 -16.33052 -15.18171 -14.76478 -14.34353 -13.69874 -13.37847 -13.03655 -12.53327 -12.45631 -12.01495 -11.74229 -11.59301 -11.36762 -10.88646 -10.76505 -10.58541 -10.27813 -9.87555 -9.59953 -9.49184 -8.90199 -8.81745 -8.02313 -7.29222 -7.01444 -6.23459 -4.41811 2.45462 2.68630 2.95219 3.00735 3.13458 3.41564 3.51807 3.65585 3.72224 4.08040 4.37777 5.15484 5.31912 5.46250 5.70761 5.73549 6.03866 6.28408 6.38626 6.44592 6.56510 6.60087 6.83668 6.86649 7.00097 7.57527 7.62288 7.86427 7.99640 8.07909 8.17632 8.46598 8.51653 8.65221 9.82680 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022890 B = 0.010188 C = 0.007142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.956255 B = 2747.670743 C = 3919.497986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.053 3.947 3 Si 0.930 3.070 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.380 4.380 8 H 0.097 0.903 9 C 0.053 3.947 10 S 0.126 5.874 11 C -0.388 4.388 12 C -0.041 4.041 13 C -0.260 4.260 14 C -0.086 4.086 15 C 0.047 3.953 16 N -0.323 5.323 17 N -0.470 5.470 18 H 0.425 0.575 19 C 0.017 3.983 20 C -0.031 4.031 21 C -0.048 4.048 22 H 0.296 0.704 23 H 0.117 0.883 24 H 0.180 0.820 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.275 -4.449 -1.206 5.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.168 4.168 3 Si 0.753 3.247 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.416 4.416 8 H 0.115 0.885 9 C -0.067 4.067 10 S 0.388 5.612 11 C -0.522 4.522 12 C -0.053 4.053 13 C -0.268 4.268 14 C -0.098 4.098 15 C -0.135 4.135 16 N -0.148 5.148 17 N -0.177 5.177 18 H 0.267 0.733 19 C -0.113 4.113 20 C -0.070 4.070 21 C -0.088 4.088 22 H 0.109 0.891 23 H 0.135 0.865 24 H 0.197 0.803 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.046 -3.391 -1.096 4.109 hybrid contribution 0.852 -0.640 -0.242 1.093 sum 2.898 -4.031 -1.338 5.142 Atomic orbital electron populations 1.68869 1.07629 1.30557 1.33621 1.26237 0.95059 1.02608 0.92903 0.85879 0.80357 0.78958 0.79461 1.19053 1.19799 1.17972 1.19163 0.96008 0.88859 1.37530 0.88495 1.21257 0.94772 0.94777 0.95942 1.84449 1.05165 0.95724 1.75856 1.25068 0.98025 1.02568 1.26564 1.19081 0.92395 0.93119 1.00667 1.17169 0.89138 0.91180 1.29265 1.18694 0.93106 0.91839 1.06177 1.23388 0.89697 0.99710 1.00706 1.77320 1.22869 0.90284 1.24360 1.45470 1.04511 1.12371 1.55316 0.73339 1.21344 0.84469 0.98818 1.06635 1.19675 0.92827 0.94202 1.00314 1.20164 0.94667 0.94748 0.99225 0.89114 0.86497 0.80317 0.92010 0.90861 0.91684 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.59 10.67 55.56 0.59 -18.00 15 2 C 0.05 1.23 5.49 -17.26 -0.09 1.13 15 3 Si 0.93 17.52 29.57 -169.99 -5.03 12.50 15 4 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 5 H -0.27 -5.01 7.11 56.52 0.40 -4.61 15 6 H -0.26 -4.75 7.11 56.52 0.40 -4.35 15 7 C -0.38 -9.51 9.03 -38.44 -0.35 -9.86 15 8 H 0.10 2.30 5.20 -52.48 -0.27 2.02 15 9 C 0.05 1.38 6.16 -38.98 -0.24 1.14 15 10 S 0.13 3.12 20.22 -107.50 -2.17 0.94 15 11 C -0.39 -9.05 10.97 29.26 0.32 -8.72 15 12 C -0.04 -0.94 5.75 -104.38 -0.60 -1.54 15 13 C -0.26 -6.50 6.00 -104.48 -0.63 -7.12 15 14 C -0.09 -1.98 6.12 -105.04 -0.64 -2.62 15 15 C 0.05 1.02 11.36 -17.53 -0.20 0.82 15 16 N -0.32 -6.58 12.68 30.51 0.39 -6.20 15 17 N -0.47 -8.34 7.28 33.90 0.25 -8.10 15 18 H 0.43 5.73 8.96 -182.35 -1.63 4.09 15 19 C 0.02 0.34 7.27 -81.60 -0.59 -0.26 15 20 C -0.03 -0.51 6.16 -28.26 -0.17 -0.68 15 21 C -0.05 -0.87 6.06 -27.40 -0.17 -1.04 15 22 H 0.30 6.35 8.30 -40.82 -0.34 6.01 15 23 H 0.12 2.47 8.06 -52.49 -0.42 2.05 15 24 H 0.18 3.67 6.14 -52.48 -0.32 3.35 15 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 15 26 H 0.07 1.17 8.14 -51.93 -0.42 0.74 15 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 LS Contribution 251.33 15.07 3.79 3.79 Total: -1.00 -28.42 251.33 -9.03 -37.45 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -3.48 Total: 6.36 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: -3.36 Total: -28.75 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 1.23 Total: -32.29 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.50 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -2.17 Total: 0.94 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.42 -9.03 -37.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259868166.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.893 kcal (2) G-P(sol) polarization free energy of solvation -28.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds