Wall clock time and date at job start Mon Mar 30 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.33858 * 125.92002 * 2 1 4 4 C 1.34510 * 111.22060 * 180.02562 * 3 2 1 5 5 C 1.34593 * 109.36015 * 359.63947 * 4 3 2 6 6 C 1.38919 * 125.92390 * 179.30271 * 2 1 3 7 7 C 1.41176 * 127.46650 * 0.02562 * 6 2 1 8 8 H 1.07998 * 119.99838 * 319.87371 * 7 6 2 9 9 C 1.39777 * 120.00114 * 139.87842 * 7 6 2 10 10 N 1.31000 * 119.99976 * 152.30522 * 9 7 6 11 11 Si 1.86804 * 120.00225 * 332.30769 * 9 7 6 12 12 H 1.48496 * 109.47234 * 95.01958 * 11 9 7 13 13 H 1.48489 * 109.47314 * 215.03051 * 11 9 7 14 14 H 1.48503 * 109.46549 * 335.02753 * 11 9 7 15 15 C 1.49341 * 110.74651 * 180.21720 * 5 4 3 16 16 C 1.41015 * 138.05596 * 179.97438 * 15 5 4 17 17 C 1.32451 * 115.62565 * 179.74359 * 16 15 5 18 18 S 1.75622 * 109.97444 * 359.93361 * 17 16 15 19 19 C 1.35015 * 108.94092 * 359.62403 * 15 5 4 20 20 C 1.51030 * 143.63946 * 179.41487 * 4 3 2 21 21 H 1.08995 * 109.47295 * 266.70116 * 1 2 3 22 22 H 1.09000 * 109.47112 * 26.70273 * 1 2 3 23 23 H 1.09001 * 109.47192 * 146.69748 * 1 2 3 24 24 H 0.97002 * 119.99734 * 179.97438 * 10 9 7 25 25 H 1.07998 * 122.18748 * 359.67890 * 16 15 5 26 26 H 1.08002 * 125.01716 * 180.02562 * 17 16 15 27 27 H 1.09001 * 110.23938 * 60.98992 * 20 4 3 28 28 H 1.08998 * 110.30954 * 299.04744 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2922 1.0840 0.0000 4 6 3.5933 0.7427 -0.0006 5 6 3.7026 -0.5987 0.0070 6 6 2.3220 -1.1249 0.0137 7 6 1.9184 -2.4776 0.0297 8 1 1.0785 -2.7835 0.6358 9 6 2.6059 -3.4212 -0.7390 10 7 2.6367 -4.6756 -0.3627 11 14 3.4809 -2.8935 -2.3028 12 1 4.9095 -2.6208 -2.0028 13 1 3.3853 -3.9773 -3.3133 14 1 2.8434 -1.6625 -2.8353 15 6 5.1376 -1.0125 0.0119 16 6 5.8842 -2.2087 0.0203 17 6 7.2006 -2.0624 0.0163 18 16 7.6145 -0.3557 -0.0006 19 6 5.9125 0.0930 -0.0011 20 6 4.9969 1.3001 -0.0101 21 1 -0.3633 -0.0591 1.0259 22 1 -0.3633 0.9181 -0.4618 23 1 -0.3633 -0.8589 -0.5642 24 1 3.1135 -5.3305 -0.8963 25 1 5.4135 -3.1807 0.0304 26 1 7.9143 -2.8730 0.0212 27 1 5.1669 1.9089 0.8780 28 1 5.1627 1.8924 -0.9099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259887184.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:57 Heat of formation + Delta-G solvation = 73.037794 kcal Electronic energy + Delta-G solvation = -15383.623257 eV Core-core repulsion = 12879.904476 eV Total energy + Delta-G solvation = -2503.718781 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.20871 -38.05353 -33.70096 -33.57602 -31.43143 -29.19431 -26.57790 -26.22633 -23.81974 -22.04573 -20.64264 -18.63148 -17.86316 -16.91686 -16.13407 -15.38469 -14.95068 -14.62571 -14.16641 -13.64488 -13.04297 -12.81778 -12.57916 -12.17711 -11.99035 -11.86362 -11.67709 -11.37889 -11.14966 -10.92827 -10.47064 -10.37952 -10.23774 -9.82802 -9.16460 -8.75354 -8.11561 -7.42670 -6.96578 -6.74814 -4.26555 1.36887 1.81867 2.36181 2.52365 3.02222 3.26361 3.33290 3.45312 3.53411 4.09473 4.18198 5.07510 5.09895 5.23153 5.48155 5.71425 5.77903 5.91239 6.07137 6.12186 6.42606 6.43474 6.52588 6.59679 6.77858 7.02061 7.05155 7.30500 7.35768 7.72640 8.34640 8.54057 8.78862 9.02274 10.29596 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.020298 B = 0.012656 C = 0.008660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.144350 B = 2211.845058 C = 3232.419775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 C -0.178 4.178 3 O -0.163 6.163 4 C -0.049 4.049 5 C -0.179 4.179 6 C 0.051 3.949 7 C -0.465 4.465 8 H 0.089 0.911 9 C 0.106 3.894 10 N -0.820 5.820 11 Si 0.863 3.137 12 H -0.243 1.243 13 H -0.287 1.287 14 H -0.257 1.257 15 C -0.006 4.006 16 C -0.090 4.090 17 C -0.226 4.226 18 S 0.109 5.891 19 C -0.255 4.255 20 C 0.070 3.930 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.077 0.923 24 H 0.278 0.722 25 H 0.141 0.859 26 H 0.165 0.835 27 H 0.098 0.902 28 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.959 6.681 -0.833 9.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.226 4.226 3 O -0.063 6.063 4 C -0.103 4.103 5 C -0.184 4.184 6 C 0.048 3.952 7 C -0.495 4.495 8 H 0.107 0.893 9 C -0.110 4.110 10 N -0.447 5.447 11 Si 0.688 3.312 12 H -0.167 1.167 13 H -0.213 1.213 14 H -0.181 1.181 15 C -0.017 4.017 16 C -0.120 4.120 17 C -0.360 4.360 18 S 0.372 5.628 19 C -0.371 4.371 20 C 0.032 3.968 21 H 0.070 0.930 22 H 0.069 0.931 23 H 0.095 0.905 24 H 0.088 0.912 25 H 0.158 0.842 26 H 0.182 0.818 27 H 0.116 0.884 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.303 7.455 -0.855 11.191 hybrid contribution -0.889 -1.127 -0.697 1.596 sum 7.413 6.328 -1.553 9.869 Atomic orbital electron populations 1.19660 0.86102 1.01497 1.00936 1.22588 0.92121 0.82454 1.25417 1.83191 1.12659 1.35893 1.74532 1.21681 0.85150 0.95002 1.08435 1.20765 0.91369 0.93827 1.12417 1.18536 0.86684 0.93632 0.96395 1.18327 1.15839 0.88694 1.26690 0.89324 1.25682 0.93125 0.94104 0.98118 1.69894 1.35278 1.03611 1.35868 0.87058 0.82333 0.79524 0.82295 1.16717 1.21298 1.18114 1.18548 0.92409 0.91485 0.99289 1.20013 0.92651 0.99553 0.99817 1.25098 0.98919 0.98715 1.13264 1.83304 1.01791 1.00458 1.77288 1.25171 0.96333 0.99825 1.15726 1.18226 0.82570 0.93082 1.02955 0.93044 0.93146 0.90460 0.91212 0.84154 0.81781 0.88369 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.50 10.22 36.00 0.37 -0.13 15 2 C -0.18 -4.32 7.47 -34.06 -0.25 -4.58 15 3 O -0.16 -3.82 10.52 6.32 0.07 -3.76 15 4 C -0.05 -1.11 8.40 -35.44 -0.30 -1.41 15 5 C -0.18 -4.47 5.54 -102.67 -0.57 -5.04 15 6 C 0.05 1.35 4.94 -104.64 -0.52 0.83 15 7 C -0.47 -13.04 9.50 -37.89 -0.36 -13.41 15 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 15 9 C 0.11 2.88 5.43 -17.33 -0.09 2.79 15 10 N -0.82 -22.46 13.94 55.54 0.77 -21.68 15 11 Si 0.86 21.07 24.81 -169.99 -4.22 16.85 15 12 H -0.24 -5.65 4.65 56.52 0.26 -5.39 15 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 14 H -0.26 -6.63 7.11 56.52 0.40 -6.23 15 15 C -0.01 -0.14 5.44 -105.37 -0.57 -0.71 15 16 C -0.09 -1.88 7.70 -40.45 -0.31 -2.19 15 17 C -0.23 -3.82 11.15 28.81 0.32 -3.50 15 18 S 0.11 1.68 23.32 -107.50 -2.51 -0.82 15 19 C -0.25 -4.83 7.57 -35.05 -0.27 -5.10 15 20 C 0.07 1.23 6.77 -28.47 -0.19 1.04 15 21 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 22 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.08 1.50 8.07 -51.93 -0.42 1.09 15 24 H 0.28 6.96 8.30 -40.82 -0.34 6.62 15 25 H 0.14 3.10 7.31 -52.49 -0.38 2.72 15 26 H 0.16 2.22 8.06 -52.49 -0.42 1.80 15 27 H 0.10 1.45 8.14 -51.93 -0.42 1.03 15 28 H 0.10 1.45 8.14 -51.93 -0.42 1.03 15 LS Contribution 253.96 15.07 3.83 3.83 Total: -1.00 -30.17 253.96 -7.42 -37.58 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -2.61 Total: -0.61 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: -2.75 Total: -31.39 kcal Atomic # 7 Polarization: -22.46 SS G_CDS: 0.77 Total: -21.68 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: 0.07 Total: -3.76 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.22 Total: 16.85 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.51 Total: -0.82 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.17 -7.42 -37.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887184.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.621 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds