Wall clock time and date at job start Mon Mar 30 2020 05:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.33858 * 125.92002 * 2 1 4 4 C 1.34510 * 111.22060 * 180.02562 * 3 2 1 5 5 C 1.34593 * 109.36015 * 359.63947 * 4 3 2 6 6 C 1.38919 * 125.92390 * 179.30271 * 2 1 3 7 7 C 1.41176 * 127.46650 * 0.02562 * 6 2 1 8 8 H 1.07998 * 119.99838 * 319.87371 * 7 6 2 9 9 C 1.39777 * 120.00114 * 139.87842 * 7 6 2 10 10 N 1.31000 * 119.99976 * 152.30522 * 9 7 6 11 11 Si 1.86804 * 120.00225 * 332.30769 * 9 7 6 12 12 H 1.48496 * 109.47234 * 95.01958 * 11 9 7 13 13 H 1.48489 * 109.47314 * 215.03051 * 11 9 7 14 14 H 1.48503 * 109.46549 * 335.02753 * 11 9 7 15 15 C 1.49341 * 110.74651 * 180.21720 * 5 4 3 16 16 C 1.41015 * 138.05596 * 179.97438 * 15 5 4 17 17 C 1.32451 * 115.62565 * 179.74359 * 16 15 5 18 18 S 1.75622 * 109.97444 * 359.93361 * 17 16 15 19 19 C 1.35015 * 108.94092 * 359.62403 * 15 5 4 20 20 C 1.51030 * 143.63946 * 179.41487 * 4 3 2 21 21 H 1.08995 * 109.47295 * 266.70116 * 1 2 3 22 22 H 1.09000 * 109.47112 * 26.70273 * 1 2 3 23 23 H 1.09001 * 109.47192 * 146.69748 * 1 2 3 24 24 H 0.97002 * 119.99734 * 179.97438 * 10 9 7 25 25 H 1.07998 * 122.18748 * 359.67890 * 16 15 5 26 26 H 1.08002 * 125.01716 * 180.02562 * 17 16 15 27 27 H 1.09001 * 110.23938 * 60.98992 * 20 4 3 28 28 H 1.08998 * 110.30954 * 299.04744 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2922 1.0840 0.0000 4 6 3.5933 0.7427 -0.0006 5 6 3.7026 -0.5987 0.0070 6 6 2.3220 -1.1249 0.0137 7 6 1.9184 -2.4776 0.0297 8 1 1.0785 -2.7835 0.6358 9 6 2.6059 -3.4212 -0.7390 10 7 2.6367 -4.6756 -0.3627 11 14 3.4809 -2.8935 -2.3028 12 1 4.9095 -2.6208 -2.0028 13 1 3.3853 -3.9773 -3.3133 14 1 2.8434 -1.6625 -2.8353 15 6 5.1376 -1.0125 0.0119 16 6 5.8842 -2.2087 0.0203 17 6 7.2006 -2.0624 0.0163 18 16 7.6145 -0.3557 -0.0006 19 6 5.9125 0.0930 -0.0011 20 6 4.9969 1.3001 -0.0101 21 1 -0.3633 -0.0591 1.0259 22 1 -0.3633 0.9181 -0.4618 23 1 -0.3633 -0.8589 -0.5642 24 1 3.1135 -5.3305 -0.8963 25 1 5.4135 -3.1807 0.0304 26 1 7.9143 -2.8730 0.0212 27 1 5.1669 1.9089 0.8780 28 1 5.1627 1.8924 -0.9099 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259887184.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:56 Heat of formation + Delta-G solvation = 54.642408 kcal Electronic energy + Delta-G solvation = -15384.420941 eV Core-core repulsion = 12879.904476 eV Total energy + Delta-G solvation = -2504.516465 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.97242 -39.60058 -35.69214 -35.07624 -33.32441 -30.86218 -28.10309 -28.01673 -25.58407 -23.50053 -22.39945 -20.47597 -19.58186 -18.54003 -17.72483 -17.12889 -16.74673 -16.21254 -15.93720 -15.17521 -14.84954 -14.55731 -14.11576 -13.71337 -13.58940 -13.40711 -13.33273 -13.17231 -12.79403 -12.65463 -12.23967 -12.15686 -11.79804 -11.73810 -11.04064 -10.53173 -9.50510 -9.19062 -8.80874 -8.57584 -6.35110 -0.05993 0.45649 0.83398 0.97640 1.14360 1.29718 1.37636 1.54354 1.87824 2.19956 2.31962 3.03726 3.66554 3.77825 3.90336 4.31359 4.46861 4.54598 4.57404 4.63714 4.76616 4.86311 4.93178 5.08973 5.12402 5.30896 5.36625 5.56364 5.65096 5.83108 6.23448 6.56355 6.83628 6.96121 8.30279 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.020298 B = 0.012656 C = 0.008660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.144350 B = 2211.845058 C = 3232.419775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 C -0.175 4.175 3 O -0.167 6.167 4 C -0.053 4.053 5 C -0.212 4.212 6 C 0.003 3.997 7 C -0.494 4.494 8 H 0.054 0.946 9 C 0.078 3.922 10 N -0.857 5.857 11 Si 0.914 3.086 12 H -0.224 1.224 13 H -0.275 1.275 14 H -0.281 1.281 15 C -0.060 4.060 16 C -0.133 4.133 17 C -0.215 4.215 18 S 0.216 5.784 19 C -0.251 4.251 20 C 0.074 3.926 21 H 0.066 0.934 22 H 0.082 0.918 23 H 0.070 0.930 24 H 0.285 0.715 25 H 0.111 0.889 26 H 0.199 0.801 27 H 0.136 0.864 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.009 9.209 -1.407 13.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.223 4.223 3 O -0.066 6.066 4 C -0.106 4.106 5 C -0.216 4.216 6 C 0.001 3.999 7 C -0.525 4.525 8 H 0.072 0.928 9 C -0.135 4.135 10 N -0.486 5.486 11 Si 0.737 3.263 12 H -0.147 1.147 13 H -0.201 1.201 14 H -0.206 1.206 15 C -0.072 4.072 16 C -0.164 4.164 17 C -0.349 4.349 18 S 0.480 5.520 19 C -0.367 4.367 20 C 0.036 3.964 21 H 0.085 0.915 22 H 0.100 0.900 23 H 0.089 0.911 24 H 0.096 0.904 25 H 0.129 0.871 26 H 0.216 0.784 27 H 0.154 0.846 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.365 9.988 -1.423 15.197 hybrid contribution -1.745 -1.780 -0.423 2.528 sum 9.620 8.209 -1.846 12.780 Atomic orbital electron populations 1.19807 0.83478 1.02841 1.02169 1.23361 0.93940 0.82332 1.22643 1.83206 1.13425 1.35317 1.74668 1.22729 0.86087 0.95094 1.06655 1.21197 0.92150 0.95236 1.13025 1.18829 0.88902 0.93596 0.98619 1.18271 1.15971 0.90354 1.27889 0.92750 1.26162 0.93623 0.93945 0.99769 1.69908 1.37078 1.04417 1.37184 0.86303 0.82403 0.78182 0.79427 1.14740 1.20062 1.20597 1.18661 0.91707 0.93449 1.03340 1.19895 0.94210 0.98207 1.04052 1.25608 0.98009 1.01610 1.09692 1.83006 0.97267 0.97386 1.74372 1.25781 0.98884 0.99228 1.12831 1.18543 0.78685 0.92911 1.06242 0.91526 0.89962 0.91084 0.90444 0.87094 0.78441 0.84643 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.04 10.22 71.23 0.73 -0.31 15 2 C -0.18 -8.62 7.47 25.85 0.19 -8.43 15 3 O -0.17 -7.68 10.52 -0.29 0.00 -7.69 15 4 C -0.05 -2.30 8.40 24.95 0.21 -2.09 15 5 C -0.21 -10.66 5.54 -18.60 -0.10 -10.76 15 6 C 0.00 0.18 4.94 -19.88 -0.10 0.09 15 7 C -0.49 -29.60 9.50 23.36 0.22 -29.38 15 8 H 0.05 3.47 8.06 -2.91 -0.02 3.45 15 9 C 0.08 4.47 5.43 85.19 0.46 4.93 15 10 N -0.86 -49.58 13.94 21.81 0.30 -49.27 15 11 Si 0.91 45.19 24.81 68.60 1.70 46.89 15 12 H -0.22 -10.35 4.65 99.48 0.46 -9.89 15 13 H -0.27 -12.79 7.11 99.48 0.71 -12.08 15 14 H -0.28 -14.75 7.11 99.48 0.71 -14.05 15 15 C -0.06 -2.65 5.44 -20.35 -0.11 -2.76 15 16 C -0.13 -5.48 7.70 21.83 0.17 -5.31 15 17 C -0.21 -6.53 11.15 66.70 0.74 -5.79 15 18 S 0.22 5.53 23.32 -56.49 -1.32 4.21 15 19 C -0.25 -8.60 7.57 25.20 0.19 -8.41 15 20 C 0.07 2.30 6.77 29.46 0.20 2.50 15 21 H 0.07 2.41 8.14 -2.39 -0.02 2.39 15 22 H 0.08 2.67 8.14 -2.39 -0.02 2.65 15 23 H 0.07 2.86 8.07 -2.39 -0.02 2.84 15 24 H 0.29 14.98 8.30 -92.71 -0.77 14.21 15 25 H 0.11 5.10 7.31 -2.91 -0.02 5.08 15 26 H 0.20 4.49 8.06 -2.91 -0.02 4.47 15 27 H 0.14 3.27 8.14 -2.39 -0.02 3.25 15 28 H 0.13 3.25 8.14 -2.39 -0.02 3.23 15 Total: -1.00 -70.47 253.96 4.43 -66.04 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 0.94 Total: 5.55 kcal Atomic # 6 Polarization: -68.54 SS G_CDS: 2.81 Total: -65.73 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.30 Total: -49.27 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.00 Total: -7.69 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.70 Total: 46.89 kcal Atomic # 16 Polarization: 5.53 SS G_CDS: -1.32 Total: 4.21 kcal Total: -70.47 4.43 -66.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887184.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.684 kcal (2) G-P(sol) polarization free energy of solvation -70.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds