Wall clock time and date at job start Mon Mar 30 2020 06:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99938 * 2 1 4 4 H 1.48499 * 109.47114 * 240.00367 * 3 2 1 5 5 H 1.48497 * 109.46919 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47095 * 120.00294 * 3 2 1 7 7 C 1.37879 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99904 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99933 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.46937 * 180.02562 * 9 7 2 11 11 C 1.35665 * 116.99887 * 179.97438 * 10 9 7 12 12 N 1.30262 * 125.81723 * 359.69300 * 11 10 9 13 13 O 1.41652 * 107.95003 * 179.91073 * 12 11 10 14 14 N 1.41673 * 107.62820 * 0.35458 * 13 12 11 15 15 C 1.30718 * 107.79262 * 359.79014 * 14 13 12 16 16 C 1.48341 * 125.86832 * 179.97438 * 15 14 13 17 17 C 1.39363 * 120.12653 * 144.76743 * 16 15 14 18 18 C 1.38006 * 119.87744 * 179.69915 * 17 16 15 19 19 C 1.38326 * 120.12351 * 0.58090 * 18 17 16 20 20 C 1.38338 * 120.24894 * 359.71698 * 19 18 17 21 21 C 1.38011 * 120.12108 * 359.97438 * 20 19 18 22 22 H 0.96991 * 120.00550 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47471 * 60.00274 * 9 7 2 24 24 H 1.08999 * 109.47314 * 300.00310 * 9 7 2 25 25 H 1.08004 * 120.06019 * 359.97438 * 17 16 15 26 26 H 1.08003 * 119.94163 * 180.31779 * 18 17 16 27 27 H 1.08004 * 119.88248 * 179.74266 * 19 18 17 28 28 H 1.07999 * 119.93855 * 180.02562 * 20 19 18 29 29 H 1.07998 * 120.05899 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.6613 -4.8389 0.0000 12 7 0.3939 -5.1396 0.0062 13 8 0.2802 -6.5516 0.0022 14 7 1.5916 -7.0876 0.0014 15 6 2.4323 -6.0866 0.0001 16 6 3.9118 -6.1940 -0.0006 17 6 4.6804 -5.2633 -0.6973 18 6 6.0567 -5.3646 -0.6893 19 6 6.6731 -6.3944 -0.0015 20 6 5.9150 -7.3247 0.6866 21 6 4.5381 -7.2294 0.6907 22 1 -0.4850 0.8399 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 4.2000 -4.4617 -1.2387 26 1 6.6536 -4.6409 -1.2246 27 1 7.7503 -6.4723 -0.0013 28 1 6.4014 -8.1264 1.2223 29 1 3.9473 -7.9560 1.2286 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259893832.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:53 Heat of formation + Delta-G solvation = 72.733279 kcal Electronic energy + Delta-G solvation = -16622.636839 eV Core-core repulsion = 13708.444734 eV Total energy + Delta-G solvation = -2914.192106 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.84233 -38.98526 -37.86667 -33.58777 -33.06958 -31.45584 -31.02198 -30.19424 -27.98061 -24.39533 -23.38897 -22.59099 -21.27359 -20.73325 -17.89291 -17.05752 -16.56167 -16.08377 -15.99242 -15.20185 -14.82249 -14.52929 -14.25105 -13.90279 -13.50942 -13.26028 -13.00544 -12.19169 -11.99800 -11.65245 -11.39697 -11.27217 -11.16636 -11.05840 -10.86301 -10.77981 -10.35334 -9.55766 -9.27478 -9.04052 -8.80789 -8.57905 -6.35353 -4.42872 0.52003 1.31527 1.42100 2.47651 2.75116 3.18810 3.19111 3.23509 3.29158 3.52961 3.82433 4.18614 4.61755 4.82374 4.86881 5.01243 5.01518 5.18955 5.34285 5.44274 5.66390 5.77144 5.95326 6.29751 6.38648 6.40072 6.65276 6.81247 6.95348 7.21945 7.50358 7.75566 7.97453 8.64757 9.22476 10.75177 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.021544 B = 0.006410 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.368511 B = 4367.251592 C = 5558.506637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.074 0.926 9 C 0.193 3.807 10 O -0.276 6.276 11 C 0.277 3.723 12 N -0.336 5.336 13 O 0.023 5.977 14 N -0.274 5.274 15 C 0.136 3.864 16 C -0.041 4.041 17 C -0.067 4.067 18 C -0.120 4.120 19 C -0.101 4.101 20 C -0.127 4.127 21 C -0.081 4.081 22 H 0.271 0.729 23 H 0.032 0.968 24 H 0.032 0.968 25 H 0.139 0.861 26 H 0.132 0.868 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.805 -10.989 -0.172 16.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.744 3.256 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.571 4.571 8 H 0.092 0.908 9 C 0.121 3.879 10 O -0.177 6.177 11 C 0.056 3.944 12 N -0.110 5.110 13 O -0.112 6.112 14 N -0.017 5.017 15 C -0.049 4.049 16 C -0.043 4.043 17 C -0.087 4.087 18 C -0.138 4.138 19 C -0.120 4.120 20 C -0.145 4.145 21 C -0.100 4.100 22 H 0.080 0.920 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.157 0.843 26 H 0.149 0.851 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.648 -11.465 -0.164 15.648 hybrid contribution 0.605 1.424 0.049 1.548 sum 11.253 -10.041 -0.115 15.082 Atomic orbital electron populations 1.69952 1.06188 1.28089 1.48217 1.24950 0.95080 0.99588 0.94358 0.86238 0.79244 0.81086 0.79059 1.19707 1.20864 1.19718 1.20844 0.94253 0.88092 1.53946 0.90799 1.20962 0.88133 0.80271 0.98486 1.86352 1.37582 1.08914 1.84844 1.24391 0.88084 0.89631 0.92255 1.80410 1.13976 0.90588 1.25981 1.93240 1.18835 1.12477 1.86640 1.79935 0.90754 1.18146 1.12894 1.23599 0.95487 0.87709 0.98095 1.17732 0.86180 0.98336 1.02011 1.21377 0.93930 0.96958 0.96441 1.21132 0.94115 0.98612 0.99985 1.21341 1.00117 0.94359 0.96172 1.21055 0.93255 0.99831 1.00390 1.21204 0.95017 0.96241 0.97567 0.91964 0.94975 0.95022 0.84269 0.85057 0.85634 0.85420 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 13.29 55.43 0.74 -24.69 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 3 Si 0.92 20.53 29.54 -169.99 -5.02 15.51 15 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 7 C -0.53 -14.57 9.43 -34.44 -0.32 -14.89 15 8 H 0.07 1.94 7.81 -52.48 -0.41 1.53 15 9 C 0.19 5.06 5.36 36.00 0.19 5.25 15 10 O -0.28 -6.28 9.17 -18.70 -0.17 -6.45 15 11 C 0.28 5.78 7.91 -14.82 -0.12 5.67 15 12 N -0.34 -7.38 12.32 31.79 0.39 -6.99 15 13 O 0.02 0.46 13.63 12.23 0.17 0.63 15 14 N -0.27 -4.94 12.94 34.51 0.45 -4.50 15 15 C 0.14 2.40 6.90 -80.78 -0.56 1.84 15 16 C -0.04 -0.61 5.86 -104.90 -0.61 -1.22 15 17 C -0.07 -0.94 9.36 -39.25 -0.37 -1.30 15 18 C -0.12 -1.34 10.03 -39.63 -0.40 -1.73 15 19 C -0.10 -0.97 10.04 -39.51 -0.40 -1.37 15 20 C -0.13 -1.27 10.03 -39.63 -0.40 -1.66 15 21 C -0.08 -0.99 9.75 -39.24 -0.38 -1.37 15 22 H 0.27 7.25 8.31 -40.82 -0.34 6.91 15 23 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 24 H 0.03 0.88 8.14 -51.93 -0.42 0.46 15 25 H 0.14 2.06 7.30 -52.48 -0.38 1.68 15 26 H 0.13 1.17 8.06 -52.48 -0.42 0.75 15 27 H 0.13 0.85 8.06 -52.48 -0.42 0.43 15 28 H 0.13 0.92 8.06 -52.49 -0.42 0.49 15 29 H 0.13 1.45 8.06 -52.49 -0.42 1.03 15 LS Contribution 274.27 15.07 4.13 4.13 Total: -1.00 -29.45 274.27 -5.24 -34.70 By element: Atomic # 1 Polarization: -0.73 SS G_CDS: -2.47 Total: -3.19 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -3.46 Total: -9.15 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 1.57 Total: -36.17 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: 0.00 Total: -5.82 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.45 -5.24 -34.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259893832.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.428 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds