Wall clock time and date at job start Mon Mar 30 2020 06:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99938 * 2 1 4 4 H 1.48499 * 109.47114 * 240.00367 * 3 2 1 5 5 H 1.48497 * 109.46919 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47095 * 120.00294 * 3 2 1 7 7 C 1.37879 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99904 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99933 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.46937 * 180.02562 * 9 7 2 11 11 C 1.35665 * 116.99887 * 179.97438 * 10 9 7 12 12 N 1.30262 * 125.81723 * 359.69300 * 11 10 9 13 13 O 1.41652 * 107.95003 * 179.91073 * 12 11 10 14 14 N 1.41673 * 107.62820 * 0.35458 * 13 12 11 15 15 C 1.30718 * 107.79262 * 359.79014 * 14 13 12 16 16 C 1.48341 * 125.86832 * 179.97438 * 15 14 13 17 17 C 1.39363 * 120.12653 * 144.76743 * 16 15 14 18 18 C 1.38006 * 119.87744 * 179.69915 * 17 16 15 19 19 C 1.38326 * 120.12351 * 0.58090 * 18 17 16 20 20 C 1.38338 * 120.24894 * 359.71698 * 19 18 17 21 21 C 1.38011 * 120.12108 * 359.97438 * 20 19 18 22 22 H 0.96991 * 120.00550 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47471 * 60.00274 * 9 7 2 24 24 H 1.08999 * 109.47314 * 300.00310 * 9 7 2 25 25 H 1.08004 * 120.06019 * 359.97438 * 17 16 15 26 26 H 1.08003 * 119.94163 * 180.31779 * 18 17 16 27 27 H 1.08004 * 119.88248 * 179.74266 * 19 18 17 28 28 H 1.07999 * 119.93855 * 180.02562 * 20 19 18 29 29 H 1.07998 * 120.05899 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 2.1798 -3.5852 -0.0005 11 6 1.6613 -4.8389 0.0000 12 7 0.3939 -5.1396 0.0062 13 8 0.2802 -6.5516 0.0022 14 7 1.5916 -7.0876 0.0014 15 6 2.4323 -6.0866 0.0001 16 6 3.9118 -6.1940 -0.0006 17 6 4.6804 -5.2633 -0.6973 18 6 6.0567 -5.3646 -0.6893 19 6 6.6731 -6.3944 -0.0015 20 6 5.9150 -7.3247 0.6866 21 6 4.5381 -7.2294 0.6907 22 1 -0.4850 0.8399 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8896 25 1 4.2000 -4.4617 -1.2387 26 1 6.6536 -4.6409 -1.2246 27 1 7.7503 -6.4723 -0.0013 28 1 6.4014 -8.1264 1.2223 29 1 3.9473 -7.9560 1.2286 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259893832.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:53 Heat of formation + Delta-G solvation = 53.077994 kcal Electronic energy + Delta-G solvation = -16623.489157 eV Core-core repulsion = 13708.444734 eV Total energy + Delta-G solvation = -2915.044423 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.41329 -39.95659 -39.69160 -35.25120 -34.83312 -33.13629 -31.94375 -31.30857 -30.06483 -26.00978 -24.88249 -23.73601 -22.87051 -22.01128 -19.52900 -18.56470 -18.35896 -17.76283 -17.33338 -16.63429 -16.24791 -16.07970 -15.71383 -15.31243 -14.71341 -14.37587 -14.09755 -13.98394 -13.60644 -13.31559 -13.04932 -12.98857 -12.62720 -12.41535 -12.32904 -12.18288 -11.93736 -11.61635 -11.08171 -10.66195 -9.93318 -9.80902 -8.44137 -6.62073 -0.82433 0.14629 0.43101 0.96417 1.09316 1.41526 1.45683 1.54787 1.74759 2.04282 2.32019 2.81347 2.91321 3.06418 3.62518 3.90293 4.03851 4.13337 4.29675 4.49653 4.52133 4.57915 4.75151 4.87798 5.09197 5.29671 5.40463 5.46843 5.53503 5.59125 5.77188 5.96273 6.01858 6.53043 7.09781 8.67907 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.021544 B = 0.006410 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.368511 B = 4367.251592 C = 5558.506637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.995 3.005 4 H -0.259 1.259 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.210 3.790 10 O -0.273 6.273 11 C 0.266 3.734 12 N -0.364 5.364 13 O 0.012 5.988 14 N -0.272 5.272 15 C 0.157 3.843 16 C -0.074 4.074 17 C -0.087 4.087 18 C -0.122 4.122 19 C -0.085 4.085 20 C -0.120 4.120 21 C -0.084 4.084 22 H 0.276 0.724 23 H 0.008 0.992 24 H 0.006 0.994 25 H 0.118 0.882 26 H 0.154 0.846 27 H 0.166 0.834 28 H 0.164 0.836 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.286 -11.180 0.142 18.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.816 3.184 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.594 4.594 8 H 0.101 0.899 9 C 0.137 3.863 10 O -0.174 6.174 11 C 0.045 3.955 12 N -0.136 5.136 13 O -0.120 6.120 14 N -0.018 5.018 15 C -0.027 4.027 16 C -0.076 4.076 17 C -0.106 4.106 18 C -0.140 4.140 19 C -0.103 4.103 20 C -0.137 4.137 21 C -0.103 4.103 22 H 0.084 0.916 23 H 0.026 0.974 24 H 0.024 0.976 25 H 0.136 0.864 26 H 0.171 0.829 27 H 0.183 0.817 28 H 0.182 0.818 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 14.096 -11.683 0.148 18.309 hybrid contribution -0.366 1.349 -0.049 1.399 sum 13.730 -10.334 0.099 17.185 Atomic orbital electron populations 1.70083 1.08119 1.29453 1.48744 1.26065 0.95966 1.03662 0.93148 0.85057 0.77928 0.75585 0.79839 1.18304 1.20313 1.18497 1.21212 0.94840 0.88725 1.54634 0.89934 1.20518 0.88105 0.81593 0.96067 1.86321 1.36507 1.09211 1.85372 1.24740 0.88717 0.89725 0.92278 1.80337 1.15050 0.92128 1.26075 1.93216 1.20396 1.11162 1.87234 1.79950 0.89670 1.17644 1.14519 1.23970 0.97002 0.85650 0.96094 1.17866 0.84200 1.00675 1.04864 1.21370 0.95447 0.96659 0.97170 1.21440 0.92818 0.99643 1.00074 1.21838 1.02114 0.92610 0.93750 1.21500 0.92055 1.00504 0.99651 1.21397 0.96460 0.95387 0.97089 0.91552 0.97417 0.97631 0.86359 0.82875 0.81675 0.81804 0.84748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.22 13.29 21.45 0.28 -53.93 15 2 C 0.01 0.64 5.46 84.66 0.46 1.10 15 3 Si 0.99 41.60 29.54 68.60 2.03 43.63 15 4 H -0.26 -10.23 7.11 99.48 0.71 -9.52 15 5 H -0.28 -11.31 7.11 99.48 0.71 -10.61 15 6 H -0.26 -10.38 7.11 99.48 0.71 -9.67 15 7 C -0.56 -31.02 9.43 25.60 0.24 -30.78 15 8 H 0.08 4.34 7.81 -2.91 -0.02 4.32 15 9 C 0.21 11.56 5.36 71.23 0.38 11.94 15 10 O -0.27 -13.00 9.17 -89.81 -0.82 -13.83 15 11 C 0.27 11.65 7.91 87.13 0.69 12.34 15 12 N -0.36 -16.88 12.32 -167.19 -2.06 -18.94 15 13 O 0.01 0.52 13.63 71.13 0.97 1.49 15 14 N -0.27 -10.00 12.94 -44.74 -0.58 -10.58 15 15 C 0.16 5.70 6.90 44.20 0.30 6.00 15 16 C -0.07 -2.17 5.86 -20.04 -0.12 -2.28 15 17 C -0.09 -2.36 9.36 22.49 0.21 -2.15 15 18 C -0.12 -2.36 10.03 22.24 0.22 -2.14 15 19 C -0.08 -1.23 10.04 22.31 0.22 -1.01 15 20 C -0.12 -1.87 10.03 22.24 0.22 -1.65 15 21 C -0.08 -1.88 9.75 22.49 0.22 -1.66 15 22 H 0.28 14.96 8.31 -92.71 -0.77 14.19 15 23 H 0.01 0.47 8.14 -2.39 -0.02 0.45 15 24 H 0.01 0.34 8.14 -2.39 -0.02 0.32 15 25 H 0.12 3.64 7.30 -2.91 -0.02 3.62 15 26 H 0.15 2.24 8.06 -2.91 -0.02 2.21 15 27 H 0.17 1.17 8.06 -2.91 -0.02 1.15 15 28 H 0.16 1.42 8.06 -2.91 -0.02 1.40 15 29 H 0.13 2.78 8.06 -2.91 -0.02 2.76 15 Total: -1.00 -65.88 274.27 4.05 -61.82 By element: Atomic # 1 Polarization: -0.56 SS G_CDS: 1.17 Total: 0.62 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 3.06 Total: -10.29 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -2.35 Total: -83.45 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.15 Total: -12.34 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -65.88 4.05 -61.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259893832.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.903 kcal (2) G-P(sol) polarization free energy of solvation -65.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds