Wall clock time and date at job start Mon Mar 30 2020 06:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00369 * 2 1 4 4 H 1.48494 * 109.46624 * 264.77212 * 3 2 1 5 5 H 1.48501 * 109.46806 * 24.76477 * 3 2 1 6 6 H 1.48498 * 109.47099 * 144.76531 * 3 2 1 7 7 C 1.37880 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99702 * 359.86926 * 7 2 1 9 9 C 1.50695 * 120.00017 * 179.86544 * 7 2 1 10 10 H 1.08999 * 110.18029 * 335.19184 * 9 7 2 11 11 C 1.54371 * 110.20749 * 213.36555 * 9 7 2 12 12 C 1.54547 * 102.02497 * 214.95493 * 11 9 7 13 13 C 1.51249 * 104.29796 * 25.33716 * 12 11 9 14 14 C 1.34667 * 143.09207 * 163.42700 * 13 12 11 15 15 C 1.50694 * 126.02852 * 0.12656 * 14 13 12 16 16 F 1.39901 * 109.46882 * 90.00360 * 15 14 13 17 17 F 1.39895 * 109.47513 * 210.00476 * 15 14 13 18 18 F 1.39899 * 109.47304 * 330.00580 * 15 14 13 19 19 N 1.34116 * 107.94436 * 180.15603 * 14 13 12 20 20 C 1.30449 * 109.25795 * 359.93302 * 19 14 13 21 21 N 1.35337 * 108.72430 * 359.92281 * 20 19 14 22 22 H 0.97008 * 119.99578 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.91778 * 333.12948 * 11 9 7 24 24 H 1.08995 * 110.92289 * 96.72997 * 11 9 7 25 25 H 1.08999 * 110.47062 * 144.04276 * 12 11 9 26 26 H 1.09002 * 110.46729 * 266.50993 * 12 11 9 27 27 H 1.07996 * 125.64194 * 179.97438 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6072 1.9825 -1.3942 5 1 1.3958 2.6821 0.5865 6 1 3.4871 1.4745 0.8077 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0031 9 6 3.5115 -1.1942 -0.0025 10 1 3.8867 -0.2662 -0.4341 11 6 4.0430 -2.4054 -0.7984 12 6 5.3185 -2.7754 -0.0079 13 6 5.0567 -2.2555 1.3881 14 6 5.4703 -2.3472 2.6664 15 6 6.5936 -3.2136 3.1746 16 9 7.7939 -2.4964 3.1268 17 9 6.3294 -3.5929 4.4950 18 9 6.7007 -4.3557 2.3738 19 7 4.7055 -1.5319 3.4075 20 6 3.8362 -0.9388 2.6367 21 7 4.0236 -1.3616 1.3648 22 1 -0.4850 0.8401 -0.0004 23 1 3.3251 -3.2255 -0.7847 24 1 4.2874 -2.1216 -1.8220 25 1 5.4571 -3.8564 0.0077 26 1 6.1909 -2.2864 -0.4415 27 1 3.0909 -0.2272 2.9598 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259908814.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:11 Heat of formation + Delta-G solvation = -94.227955 kcal Electronic energy + Delta-G solvation = -18089.967982 eV Core-core repulsion = 14626.679153 eV Total energy + Delta-G solvation = -3463.288829 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.68207 -47.24232 -47.15811 -41.92688 -36.22022 -33.00886 -31.33739 -29.20550 -28.19606 -24.82992 -23.80135 -21.43959 -20.23855 -19.80143 -18.09498 -17.75886 -17.60745 -17.34406 -15.50509 -14.99431 -14.29545 -14.11931 -13.96406 -13.65621 -13.59342 -13.36334 -13.35615 -13.24419 -13.11405 -12.64677 -12.30287 -12.13758 -11.80969 -11.23547 -10.99679 -10.41025 -10.24264 -10.09805 -9.68092 -9.13573 -8.76553 -8.02952 -6.63597 -4.75530 2.43287 2.92274 3.03236 3.04897 3.06910 3.32095 3.61139 3.92858 4.17927 4.55489 4.68850 4.89377 4.92007 5.10729 5.40678 5.52493 5.67136 5.97489 6.01905 6.15493 6.36906 6.52917 6.72412 6.91228 7.11119 7.88942 7.94678 8.40685 8.45944 8.93047 10.46075 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.037328 B = 0.007597 C = 0.007120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.922531 B = 3684.538307 C = 3931.856327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.087 3.913 3 Si 0.871 3.129 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.527 4.527 8 H 0.087 0.913 9 C 0.207 3.793 10 H 0.064 0.936 11 C -0.111 4.111 12 C -0.062 4.062 13 C 0.011 3.989 14 C -0.106 4.106 15 C 0.558 3.442 16 F -0.183 7.183 17 F -0.175 7.175 18 F -0.179 7.179 19 N -0.475 5.475 20 C 0.222 3.778 21 N -0.434 5.434 22 H 0.275 0.725 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.912 -2.973 -0.114 10.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.122 4.122 3 Si 0.696 3.304 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.565 4.565 8 H 0.105 0.895 9 C 0.111 3.889 10 H 0.081 0.919 11 C -0.149 4.149 12 C -0.100 4.100 13 C -0.114 4.114 14 C -0.236 4.236 15 C 0.502 3.498 16 F -0.164 7.164 17 F -0.157 7.157 18 F -0.161 7.161 19 N -0.193 5.193 20 C -0.061 4.061 21 N -0.113 5.113 22 H 0.085 0.915 23 H 0.102 0.898 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 9.575 -2.568 0.654 9.935 hybrid contribution 0.266 0.790 -0.565 1.007 sum 9.841 -1.778 0.089 10.001 Atomic orbital electron populations 1.69870 1.06453 1.28331 1.44858 1.25221 0.94930 0.99463 0.92621 0.86932 0.80524 0.83201 0.79714 1.19171 1.20260 1.18652 1.21054 0.87034 0.95580 1.52837 0.89531 1.20433 0.96638 0.96067 0.75760 0.91862 1.22676 0.95079 0.98648 0.98545 1.20834 0.99399 1.01618 0.88167 1.22161 0.94785 0.98571 0.95884 1.19281 1.04632 1.09132 0.90565 1.17037 0.80508 0.77477 0.74734 1.93172 1.48812 1.78251 1.96190 1.93164 1.93908 1.91756 1.36826 1.93147 1.96419 1.52480 1.74022 1.70063 1.06836 1.10332 1.32074 1.24373 1.00477 1.02226 0.79037 1.49052 1.23331 1.28725 1.10163 0.91463 0.89803 0.89660 0.89589 0.89803 0.78115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.16 13.96 55.43 0.77 -22.39 15 2 C 0.09 2.17 5.47 -17.82 -0.10 2.07 15 3 Si 0.87 18.60 26.89 -169.99 -4.57 14.03 15 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 6 H -0.26 -5.51 7.00 56.52 0.40 -5.11 15 7 C -0.53 -12.87 9.16 -34.44 -0.32 -13.18 15 8 H 0.09 2.34 7.95 -52.49 -0.42 1.93 15 9 C 0.21 4.27 3.05 -68.11 -0.21 4.06 15 10 H 0.06 1.29 5.58 -51.93 -0.29 1.00 15 11 C -0.11 -1.85 6.64 -25.20 -0.17 -2.02 15 12 C -0.06 -0.96 6.84 -26.80 -0.18 -1.14 15 13 C 0.01 0.22 7.08 -81.45 -0.58 -0.36 15 14 C -0.11 -2.14 6.44 -82.86 -0.53 -2.67 15 15 C 0.56 9.94 3.54 36.00 0.13 10.07 15 16 F -0.18 -3.14 17.30 2.25 0.04 -3.10 15 17 F -0.18 -3.19 17.26 2.25 0.04 -3.15 15 18 F -0.18 -2.93 17.02 2.25 0.04 -2.89 15 19 N -0.48 -10.20 11.20 -10.82 -0.12 -10.32 15 20 C 0.22 4.68 13.00 -90.15 -1.17 3.51 15 21 N -0.43 -9.14 3.26 -106.84 -0.35 -9.49 15 22 H 0.28 6.88 8.31 -40.82 -0.34 6.55 15 23 H 0.08 1.44 7.83 -51.93 -0.41 1.03 15 24 H 0.08 1.20 8.14 -51.93 -0.42 0.77 15 25 H 0.09 1.19 8.14 -51.93 -0.42 0.77 15 26 H 0.08 1.13 8.14 -51.93 -0.42 0.70 15 27 H 0.20 3.86 8.06 -52.49 -0.42 3.44 15 LS Contribution 251.49 15.07 3.79 3.79 Total: -1.00 -27.36 251.49 -5.43 -32.79 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: -1.95 Total: 0.38 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -3.13 Total: 0.34 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.30 Total: -42.20 kcal Atomic # 9 Polarization: -9.25 SS G_CDS: 0.12 Total: -9.14 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -4.57 Total: 14.03 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.36 -5.43 -32.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259908814.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.434 kcal (2) G-P(sol) polarization free energy of solvation -27.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds