Wall clock time and date at job start Mon Mar 30 2020 06:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00369 * 2 1 4 4 H 1.48494 * 109.46624 * 264.77212 * 3 2 1 5 5 H 1.48501 * 109.46806 * 24.76477 * 3 2 1 6 6 H 1.48498 * 109.47099 * 144.76531 * 3 2 1 7 7 C 1.37880 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99702 * 359.86926 * 7 2 1 9 9 C 1.50695 * 120.00017 * 179.86544 * 7 2 1 10 10 H 1.08999 * 110.18029 * 335.19184 * 9 7 2 11 11 C 1.54371 * 110.20749 * 213.36555 * 9 7 2 12 12 C 1.54547 * 102.02497 * 214.95493 * 11 9 7 13 13 C 1.51249 * 104.29796 * 25.33716 * 12 11 9 14 14 C 1.34667 * 143.09207 * 163.42700 * 13 12 11 15 15 C 1.50694 * 126.02852 * 0.12656 * 14 13 12 16 16 F 1.39901 * 109.46882 * 90.00360 * 15 14 13 17 17 F 1.39895 * 109.47513 * 210.00476 * 15 14 13 18 18 F 1.39899 * 109.47304 * 330.00580 * 15 14 13 19 19 N 1.34116 * 107.94436 * 180.15603 * 14 13 12 20 20 C 1.30449 * 109.25795 * 359.93302 * 19 14 13 21 21 N 1.35337 * 108.72430 * 359.92281 * 20 19 14 22 22 H 0.97008 * 119.99578 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.91778 * 333.12948 * 11 9 7 24 24 H 1.08995 * 110.92289 * 96.72997 * 11 9 7 25 25 H 1.08999 * 110.47062 * 144.04276 * 12 11 9 26 26 H 1.09002 * 110.46729 * 266.50993 * 12 11 9 27 27 H 1.07996 * 125.64194 * 179.97438 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6072 1.9825 -1.3942 5 1 1.3958 2.6821 0.5865 6 1 3.4871 1.4745 0.8077 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0031 9 6 3.5115 -1.1942 -0.0025 10 1 3.8867 -0.2662 -0.4341 11 6 4.0430 -2.4054 -0.7984 12 6 5.3185 -2.7754 -0.0079 13 6 5.0567 -2.2555 1.3881 14 6 5.4703 -2.3472 2.6664 15 6 6.5936 -3.2136 3.1746 16 9 7.7939 -2.4964 3.1268 17 9 6.3294 -3.5929 4.4950 18 9 6.7007 -4.3557 2.3738 19 7 4.7055 -1.5319 3.4075 20 6 3.8362 -0.9388 2.6367 21 7 4.0236 -1.3616 1.3648 22 1 -0.4850 0.8401 -0.0004 23 1 3.3251 -3.2255 -0.7847 24 1 4.2874 -2.1216 -1.8220 25 1 5.4571 -3.8564 0.0077 26 1 6.1909 -2.2864 -0.4415 27 1 3.0909 -0.2272 2.9598 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259908814.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:11 Heat of formation + Delta-G solvation = -108.956119 kcal Electronic energy + Delta-G solvation = -18090.606643 eV Core-core repulsion = 14626.679153 eV Total energy + Delta-G solvation = -3463.927490 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -51.06556 -48.59443 -48.56348 -43.49227 -37.75981 -34.84352 -32.85530 -30.83500 -29.73663 -26.40266 -25.38930 -22.90388 -21.78240 -21.33933 -19.54206 -19.43429 -19.09606 -18.86028 -17.03060 -16.68990 -15.88594 -15.53803 -15.39858 -15.06387 -15.01434 -14.90523 -14.74414 -14.74052 -14.65521 -14.21398 -13.75879 -13.53408 -13.28928 -12.88555 -12.46144 -12.03218 -11.91359 -11.80622 -11.25957 -10.99864 -10.40804 -9.56143 -8.54575 -6.71498 0.90825 1.25186 1.30696 1.37515 1.61324 1.70493 2.03152 2.14289 2.71930 2.97817 3.13990 3.35819 3.51358 3.73531 4.00057 4.07065 4.25334 4.50233 4.67611 4.87136 4.96749 5.12477 5.27801 5.40268 5.42106 6.00785 6.31875 6.45927 6.82589 7.01943 8.59379 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.037328 B = 0.007597 C = 0.007120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.922531 B = 3684.538307 C = 3931.856327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.040 3.960 3 Si 0.934 3.066 4 H -0.251 1.251 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.531 4.531 8 H 0.045 0.955 9 C 0.204 3.796 10 H 0.073 0.927 11 C -0.106 4.106 12 C -0.055 4.055 13 C 0.015 3.985 14 C -0.128 4.128 15 C 0.566 3.434 16 F -0.177 7.177 17 F -0.179 7.179 18 F -0.168 7.168 19 N -0.491 5.491 20 C 0.204 3.796 21 N -0.447 5.447 22 H 0.277 0.723 23 H 0.072 0.928 24 H 0.119 0.881 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.164 -2.874 -1.027 12.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.164 4.164 3 Si 0.756 3.244 4 H -0.175 1.175 5 H -0.207 1.207 6 H -0.179 1.179 7 C -0.569 4.569 8 H 0.063 0.937 9 C 0.108 3.892 10 H 0.090 0.910 11 C -0.144 4.144 12 C -0.093 4.093 13 C -0.110 4.110 14 C -0.257 4.257 15 C 0.511 3.489 16 F -0.159 7.159 17 F -0.160 7.160 18 F -0.149 7.149 19 N -0.209 5.209 20 C -0.079 4.079 21 N -0.127 5.127 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.138 0.862 25 H 0.126 0.874 26 H 0.134 0.866 27 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 11.853 -2.493 -0.257 12.115 hybrid contribution -0.439 0.665 -0.246 0.834 sum 11.415 -1.828 -0.503 11.571 Atomic orbital electron populations 1.69997 1.08305 1.29275 1.47363 1.25983 0.95426 1.02881 0.92129 0.85936 0.79192 0.78773 0.80453 1.17497 1.20659 1.17930 1.21127 0.89288 0.93916 1.52591 0.93717 1.20525 0.94178 0.98561 0.75927 0.90967 1.22699 0.95268 0.96478 0.99934 1.21027 0.99683 1.03248 0.85370 1.22804 0.93568 0.97313 0.97273 1.19666 1.05375 1.09572 0.91051 1.16754 0.80058 0.77488 0.74617 1.93182 1.48307 1.78229 1.96156 1.93158 1.93962 1.91760 1.37157 1.93169 1.96333 1.51734 1.73652 1.70038 1.07277 1.10872 1.32688 1.24620 1.00999 1.02911 0.79362 1.48843 1.24243 1.29566 1.10053 0.91377 0.90934 0.86240 0.87352 0.86554 0.77423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.44 13.96 21.45 0.30 -50.14 15 2 C 0.04 2.02 5.47 84.65 0.46 2.49 15 3 Si 0.93 37.87 26.89 68.60 1.84 39.71 15 4 H -0.25 -9.50 7.11 99.48 0.71 -8.79 15 5 H -0.28 -11.49 7.11 99.48 0.71 -10.78 15 6 H -0.26 -9.97 7.00 99.48 0.70 -9.28 15 7 C -0.53 -26.18 9.16 25.60 0.23 -25.95 15 8 H 0.04 2.52 7.95 -2.91 -0.02 2.50 15 9 C 0.20 8.08 3.05 44.62 0.14 8.22 15 10 H 0.07 2.73 5.58 -2.39 -0.01 2.72 15 11 C -0.11 -3.20 6.64 31.59 0.21 -2.99 15 12 C -0.06 -1.49 6.84 30.55 0.21 -1.28 15 13 C 0.02 0.55 7.08 41.17 0.29 0.84 15 14 C -0.13 -4.89 6.44 41.39 0.27 -4.63 15 15 C 0.57 18.92 3.54 71.23 0.25 19.17 15 16 F -0.18 -5.65 17.30 44.97 0.78 -4.88 15 17 F -0.18 -6.23 17.26 44.97 0.78 -5.46 15 18 F -0.17 -4.98 17.02 44.97 0.77 -4.21 15 19 N -0.49 -20.61 11.20 -188.15 -2.11 -22.72 15 20 C 0.20 8.48 13.00 180.18 2.34 10.82 15 21 N -0.45 -18.19 3.26 -491.94 -1.61 -19.79 15 22 H 0.28 14.22 8.31 -92.70 -0.77 13.45 15 23 H 0.07 2.36 7.83 -2.39 -0.02 2.35 15 24 H 0.12 2.82 8.14 -2.39 -0.02 2.80 15 25 H 0.11 2.50 8.14 -2.39 -0.02 2.48 15 26 H 0.12 2.47 8.14 -2.39 -0.02 2.45 15 27 H 0.21 8.01 8.06 -2.91 -0.02 7.98 15 Total: -1.00 -59.27 251.49 6.36 -52.91 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 1.20 Total: 7.89 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 4.40 Total: 6.69 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -3.41 Total: -92.65 kcal Atomic # 9 Polarization: -16.86 SS G_CDS: 2.32 Total: -14.55 kcal Atomic # 14 Polarization: 37.87 SS G_CDS: 1.84 Total: 39.71 kcal Total: -59.27 6.36 -52.91 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259908814.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.046 kcal (2) G-P(sol) polarization free energy of solvation -59.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds