Wall clock time and date at job start Mon Mar 30 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99914 * 2 1 4 4 H 1.48494 * 109.46803 * 264.80341 * 3 2 1 5 5 H 1.48501 * 109.46992 * 24.79974 * 3 2 1 6 6 H 1.48495 * 109.47111 * 144.80295 * 3 2 1 7 7 C 1.37877 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00013 * 4.42165 * 7 2 1 9 9 C 1.50697 * 119.99961 * 184.42107 * 7 2 1 10 10 H 1.08999 * 110.24880 * 333.36808 * 9 7 2 11 11 C 1.54371 * 110.20658 * 95.24502 * 9 7 2 12 12 C 1.54554 * 102.05577 * 144.99344 * 11 9 7 13 13 C 1.51234 * 104.30153 * 334.65410 * 12 11 9 14 14 C 1.34672 * 143.09524 * 196.53847 * 13 12 11 15 15 C 1.50696 * 126.02261 * 359.82581 * 14 13 12 16 16 F 1.39899 * 109.47045 * 90.00343 * 15 14 13 17 17 F 1.39909 * 109.46874 * 210.00232 * 15 14 13 18 18 F 1.39892 * 109.47539 * 330.00115 * 15 14 13 19 19 N 1.34122 * 107.95108 * 179.85328 * 14 13 12 20 20 C 1.30448 * 109.25133 * 0.05771 * 19 14 13 21 21 N 1.35331 * 108.72837 * 0.07857 * 20 19 14 22 22 H 0.96997 * 120.00134 * 359.97438 * 1 2 3 23 23 H 1.09002 * 110.91997 * 26.79798 * 11 9 7 24 24 H 1.08999 * 110.91912 * 263.19140 * 11 9 7 25 25 H 1.09001 * 110.46409 * 93.35652 * 12 11 9 26 26 H 1.09003 * 110.46857 * 215.81812 * 12 11 9 27 27 H 1.08001 * 125.63773 * 180.11842 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6064 1.9830 -1.3943 5 1 1.3959 2.6819 0.5873 6 1 3.4875 1.4744 0.8070 7 6 2.0046 -1.1940 0.0005 8 1 1.4670 -2.1281 -0.0712 9 6 3.5082 -1.1959 0.1011 10 1 3.9140 -0.2654 -0.2959 11 6 3.9441 -1.3839 1.5701 12 6 5.2292 -2.2291 1.4198 13 6 5.0513 -2.9484 0.1014 14 6 5.5108 -3.9791 -0.6336 15 6 6.6083 -4.9318 -0.2353 16 9 6.0553 -6.0220 0.4450 17 9 7.2713 -5.3847 -1.3812 18 9 7.5173 -4.2734 0.5997 19 7 4.8198 -4.0077 -1.7828 20 6 3.9518 -3.0339 -1.7872 21 7 4.0654 -2.3454 -0.6277 22 1 -0.4850 0.8400 0.0004 23 1 3.1856 -1.9260 2.1348 24 1 4.1623 -0.4235 2.0372 25 1 6.1076 -1.5845 1.3867 26 1 5.3130 -2.9443 2.2381 27 1 3.2569 -2.8139 -2.5841 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259908818.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:13 Heat of formation + Delta-G solvation = -91.946808 kcal Electronic energy + Delta-G solvation = -17977.948274 eV Core-core repulsion = 14514.758363 eV Total energy + Delta-G solvation = -3463.189911 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.73088 -47.29032 -47.20573 -42.05723 -36.29238 -32.90645 -31.46648 -29.26286 -28.22059 -24.88482 -23.75931 -21.51483 -20.36808 -19.82108 -18.14630 -17.76654 -17.66570 -17.41395 -15.45321 -15.10629 -14.23196 -14.21443 -13.96448 -13.70121 -13.67529 -13.41087 -13.40737 -13.38047 -12.92390 -12.65612 -12.38637 -12.13198 -11.84135 -11.25029 -10.84200 -10.61556 -10.43254 -9.98361 -9.73971 -9.10323 -8.81467 -8.14251 -6.54582 -4.63227 2.31596 2.93979 2.99705 3.03391 3.08056 3.19960 3.53568 3.98132 4.10845 4.48999 4.61741 4.85376 4.87374 5.05362 5.43496 5.47100 5.66687 5.95500 5.97682 6.15274 6.36529 6.49909 6.74888 6.81805 7.09377 7.70331 8.01567 8.29125 8.50106 9.01014 10.56370 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.042898 B = 0.006860 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.559883 B = 4080.533205 C = 4289.195680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.087 3.913 3 Si 0.873 3.127 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.540 4.540 8 H 0.085 0.915 9 C 0.223 3.777 10 H 0.060 0.940 11 C -0.126 4.126 12 C -0.062 4.062 13 C 0.019 3.981 14 C -0.104 4.104 15 C 0.558 3.442 16 F -0.180 7.180 17 F -0.175 7.175 18 F -0.179 7.179 19 N -0.472 5.472 20 C 0.225 3.775 21 N -0.433 5.433 22 H 0.273 0.727 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.227 -2.471 2.008 10.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.120 4.120 3 Si 0.699 3.301 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.578 4.578 8 H 0.104 0.896 9 C 0.124 3.876 10 H 0.078 0.922 11 C -0.165 4.165 12 C -0.101 4.101 13 C -0.106 4.106 14 C -0.234 4.234 15 C 0.503 3.497 16 F -0.162 7.162 17 F -0.156 7.156 18 F -0.160 7.160 19 N -0.190 5.190 20 C -0.058 4.058 21 N -0.111 5.111 22 H 0.084 0.916 23 H 0.106 0.894 24 H 0.101 0.899 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 9.943 -2.765 1.269 10.398 hybrid contribution 0.246 1.295 0.507 1.412 sum 10.189 -1.470 1.776 10.447 Atomic orbital electron populations 1.69854 1.06305 1.28041 1.46432 1.24968 0.94860 0.99034 0.93161 0.86913 0.80329 0.83419 0.79429 1.19465 1.20400 1.18685 1.20896 0.87028 0.95806 1.54025 0.89649 1.20365 0.96431 0.82784 0.87990 0.92215 1.23047 0.95305 1.00113 0.97992 1.20856 0.99793 0.98001 0.91418 1.22152 0.95029 0.96723 0.96662 1.19265 1.05862 1.01303 0.96939 1.17004 0.80152 0.78426 0.74161 1.93186 1.85529 1.56780 1.80664 1.93169 1.82123 1.89915 1.50439 1.93152 1.69045 1.81108 1.72732 1.70099 1.08183 1.21183 1.19506 1.24517 1.00436 0.90128 0.90718 1.47794 1.25802 1.23868 1.13614 0.91630 0.89350 0.89933 0.89656 0.89691 0.77356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.68 13.96 55.43 0.77 -22.91 15 2 C 0.09 2.18 5.47 -17.82 -0.10 2.08 15 3 Si 0.87 18.35 26.98 -169.99 -4.59 13.76 15 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 6 H -0.26 -5.09 6.72 56.52 0.38 -4.71 15 7 C -0.54 -13.31 9.11 -34.44 -0.31 -13.63 15 8 H 0.09 2.38 8.06 -52.48 -0.42 1.96 15 9 C 0.22 4.64 3.07 -68.05 -0.21 4.43 15 10 H 0.06 1.23 5.48 -51.93 -0.28 0.95 15 11 C -0.13 -2.22 6.64 -25.20 -0.17 -2.38 15 12 C -0.06 -0.98 6.84 -26.80 -0.18 -1.17 15 13 C 0.02 0.36 7.08 -81.45 -0.58 -0.22 15 14 C -0.10 -2.02 6.44 -82.86 -0.53 -2.55 15 15 C 0.56 9.65 3.54 36.00 0.13 9.78 15 16 F -0.18 -3.09 17.30 2.25 0.04 -3.05 15 17 F -0.18 -3.05 17.26 2.25 0.04 -3.01 15 18 F -0.18 -2.82 17.02 2.25 0.04 -2.78 15 19 N -0.47 -9.59 11.20 -10.82 -0.12 -9.71 15 20 C 0.22 4.41 13.00 -90.15 -1.17 3.24 15 21 N -0.43 -8.82 3.27 -106.77 -0.35 -9.16 15 22 H 0.27 6.91 8.31 -40.82 -0.34 6.58 15 23 H 0.09 1.62 7.91 -51.93 -0.41 1.21 15 24 H 0.08 1.31 7.99 -51.93 -0.42 0.89 15 25 H 0.09 1.18 8.14 -51.93 -0.42 0.76 15 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 27 H 0.21 3.52 8.06 -52.49 -0.42 3.09 15 LS Contribution 251.20 15.07 3.79 3.79 Total: -1.00 -27.28 251.20 -5.47 -32.74 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -1.96 Total: 0.75 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -3.13 Total: -0.42 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.30 Total: -41.78 kcal Atomic # 9 Polarization: -8.96 SS G_CDS: 0.12 Total: -8.84 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -4.59 Total: 13.76 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.28 -5.47 -32.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259908818.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.205 kcal (2) G-P(sol) polarization free energy of solvation -27.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds