Wall clock time and date at job start Mon Mar 30 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99914 * 2 1 4 4 H 1.48494 * 109.46803 * 264.80341 * 3 2 1 5 5 H 1.48501 * 109.46992 * 24.79974 * 3 2 1 6 6 H 1.48495 * 109.47111 * 144.80295 * 3 2 1 7 7 C 1.37877 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00013 * 4.42165 * 7 2 1 9 9 C 1.50697 * 119.99961 * 184.42107 * 7 2 1 10 10 H 1.08999 * 110.24880 * 333.36808 * 9 7 2 11 11 C 1.54371 * 110.20658 * 95.24502 * 9 7 2 12 12 C 1.54554 * 102.05577 * 144.99344 * 11 9 7 13 13 C 1.51234 * 104.30153 * 334.65410 * 12 11 9 14 14 C 1.34672 * 143.09524 * 196.53847 * 13 12 11 15 15 C 1.50696 * 126.02261 * 359.82581 * 14 13 12 16 16 F 1.39899 * 109.47045 * 90.00343 * 15 14 13 17 17 F 1.39909 * 109.46874 * 210.00232 * 15 14 13 18 18 F 1.39892 * 109.47539 * 330.00115 * 15 14 13 19 19 N 1.34122 * 107.95108 * 179.85328 * 14 13 12 20 20 C 1.30448 * 109.25133 * 0.05771 * 19 14 13 21 21 N 1.35331 * 108.72837 * 0.07857 * 20 19 14 22 22 H 0.96997 * 120.00134 * 359.97438 * 1 2 3 23 23 H 1.09002 * 110.91997 * 26.79798 * 11 9 7 24 24 H 1.08999 * 110.91912 * 263.19140 * 11 9 7 25 25 H 1.09001 * 110.46409 * 93.35652 * 12 11 9 26 26 H 1.09003 * 110.46857 * 215.81812 * 12 11 9 27 27 H 1.08001 * 125.63773 * 180.11842 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6064 1.9830 -1.3943 5 1 1.3959 2.6819 0.5873 6 1 3.4875 1.4744 0.8070 7 6 2.0046 -1.1940 0.0005 8 1 1.4670 -2.1281 -0.0712 9 6 3.5082 -1.1959 0.1011 10 1 3.9140 -0.2654 -0.2959 11 6 3.9441 -1.3839 1.5701 12 6 5.2292 -2.2291 1.4198 13 6 5.0513 -2.9484 0.1014 14 6 5.5108 -3.9791 -0.6336 15 6 6.6083 -4.9318 -0.2353 16 9 6.0553 -6.0220 0.4450 17 9 7.2713 -5.3847 -1.3812 18 9 7.5173 -4.2734 0.5997 19 7 4.8198 -4.0077 -1.7828 20 6 3.9518 -3.0339 -1.7872 21 7 4.0654 -2.3454 -0.6277 22 1 -0.4850 0.8400 0.0004 23 1 3.1856 -1.9260 2.1348 24 1 4.1623 -0.4235 2.0372 25 1 6.1076 -1.5845 1.3867 26 1 5.3130 -2.9443 2.2381 27 1 3.2569 -2.8139 -2.5841 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259908818.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:13 Heat of formation + Delta-G solvation = -106.674370 kcal Electronic energy + Delta-G solvation = -17978.586909 eV Core-core repulsion = 14514.758363 eV Total energy + Delta-G solvation = -3463.828546 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -51.07538 -48.60381 -48.57293 -43.56422 -37.81976 -34.75558 -32.93467 -30.87780 -29.73921 -26.42458 -25.35055 -22.96397 -21.86953 -21.31731 -19.57371 -19.40502 -19.12584 -18.89757 -16.98265 -16.75262 -15.77215 -15.56985 -15.40789 -15.11745 -15.02644 -14.89904 -14.75184 -14.74670 -14.55485 -14.18717 -13.80860 -13.55711 -13.28172 -12.86840 -12.45380 -12.08057 -12.01070 -11.78067 -11.27996 -10.92866 -10.46111 -9.61279 -8.46120 -6.60536 0.84265 1.32477 1.36077 1.44859 1.59110 1.66660 2.02246 2.22701 2.70129 2.90109 3.11661 3.34031 3.49093 3.68165 3.99871 4.11312 4.20466 4.46827 4.63838 4.85601 4.93227 5.07047 5.29463 5.36897 5.38842 5.96231 6.27237 6.48191 6.77476 7.08390 8.69017 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.042898 B = 0.006860 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.559883 B = 4080.533205 C = 4289.195680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.034 3.966 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.226 1.226 7 C -0.542 4.542 8 H 0.034 0.966 9 C 0.222 3.778 10 H 0.071 0.929 11 C -0.121 4.121 12 C -0.056 4.056 13 C 0.019 3.981 14 C -0.123 4.123 15 C 0.566 3.434 16 F -0.180 7.180 17 F -0.177 7.177 18 F -0.166 7.166 19 N -0.488 5.488 20 C 0.212 3.788 21 N -0.448 5.448 22 H 0.275 0.725 23 H 0.074 0.926 24 H 0.110 0.890 25 H 0.117 0.883 26 H 0.108 0.892 27 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.595 -1.370 3.024 13.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.168 4.168 3 Si 0.760 3.240 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.148 1.148 7 C -0.580 4.580 8 H 0.053 0.947 9 C 0.122 3.878 10 H 0.088 0.912 11 C -0.160 4.160 12 C -0.093 4.093 13 C -0.105 4.105 14 C -0.252 4.252 15 C 0.510 3.490 16 F -0.161 7.161 17 F -0.158 7.158 18 F -0.147 7.147 19 N -0.206 5.206 20 C -0.071 4.071 21 N -0.127 5.127 22 H 0.084 0.916 23 H 0.092 0.908 24 H 0.129 0.871 25 H 0.135 0.865 26 H 0.126 0.874 27 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 12.347 -1.698 2.295 12.673 hybrid contribution -0.539 0.836 0.154 1.006 sum 11.808 -0.863 2.449 12.090 Atomic orbital electron populations 1.70005 1.08488 1.29146 1.48715 1.25849 0.95481 1.03000 0.92500 0.85880 0.80168 0.78011 0.79966 1.19282 1.20650 1.14838 1.20939 0.89382 0.93901 1.53768 0.94734 1.20403 0.93666 0.83516 0.90194 0.91167 1.22982 0.95879 1.01862 0.95271 1.21017 0.99745 0.98339 0.90246 1.22724 0.94026 0.96183 0.97558 1.19629 1.06576 1.02082 0.96909 1.16748 0.79846 0.78115 0.74263 1.93189 1.85608 1.56718 1.80600 1.93167 1.82049 1.89899 1.50678 1.93175 1.68447 1.80842 1.72255 1.70088 1.08646 1.21448 1.20385 1.24904 1.00726 0.90192 0.91234 1.47778 1.26604 1.24222 1.14086 0.91570 0.90760 0.87144 0.86520 0.87379 0.76038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.82 13.96 21.45 0.30 -51.52 15 2 C 0.03 1.70 5.47 84.65 0.46 2.16 15 3 Si 0.94 36.46 26.98 68.60 1.85 38.31 15 4 H -0.27 -10.31 7.11 99.48 0.71 -9.60 15 5 H -0.28 -10.99 7.11 99.48 0.71 -10.28 15 6 H -0.23 -7.40 6.72 99.48 0.67 -6.74 15 7 C -0.54 -27.11 9.11 25.60 0.23 -26.88 15 8 H 0.03 2.03 8.06 -2.91 -0.02 2.00 15 9 C 0.22 8.82 3.07 44.60 0.14 8.95 15 10 H 0.07 2.66 5.48 -2.39 -0.01 2.64 15 11 C -0.12 -3.89 6.64 31.59 0.21 -3.68 15 12 C -0.06 -1.52 6.84 30.55 0.21 -1.32 15 13 C 0.02 0.67 7.08 41.16 0.29 0.96 15 14 C -0.12 -4.58 6.44 41.39 0.27 -4.31 15 15 C 0.57 18.41 3.54 71.23 0.25 18.66 15 16 F -0.18 -5.84 17.30 44.97 0.78 -5.07 15 17 F -0.18 -5.86 17.26 44.97 0.78 -5.08 15 18 F -0.17 -4.72 17.02 44.97 0.77 -3.95 15 19 N -0.49 -19.50 11.20 -188.14 -2.11 -21.61 15 20 C 0.21 8.28 13.00 180.19 2.34 10.62 15 21 N -0.45 -17.74 3.27 -491.72 -1.61 -19.34 15 22 H 0.27 14.29 8.31 -92.71 -0.77 13.52 15 23 H 0.07 2.58 7.91 -2.39 -0.02 2.56 15 24 H 0.11 2.94 7.99 -2.39 -0.02 2.92 15 25 H 0.12 2.56 8.14 -2.39 -0.02 2.54 15 26 H 0.11 2.53 8.14 -2.39 -0.02 2.51 15 27 H 0.22 7.61 8.06 -2.91 -0.02 7.59 15 Total: -1.00 -59.75 251.20 6.34 -53.42 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 1.17 Total: 9.67 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 4.40 Total: 5.18 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -3.41 Total: -92.48 kcal Atomic # 9 Polarization: -16.42 SS G_CDS: 2.32 Total: -14.10 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 1.85 Total: 38.31 kcal Total: -59.75 6.34 -53.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259908818.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.258 kcal (2) G-P(sol) polarization free energy of solvation -59.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds