Wall clock time and date at job start Mon Mar 30 2020 05:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37971 * 119.54549 * 2 1 4 4 C 1.39992 * 118.98647 * 179.97438 * 3 2 1 5 5 C 1.47819 * 120.92862 * 179.97438 * 4 3 2 6 6 N 1.29814 * 125.06277 * 179.74657 * 5 4 3 7 7 C 1.32693 * 116.03216 * 179.78525 * 6 5 4 8 8 C 1.41172 * 122.77551 * 180.26197 * 7 6 5 9 9 H 1.08001 * 120.00061 * 180.26379 * 8 7 6 10 10 C 1.39688 * 119.99858 * 0.25794 * 8 7 6 11 11 N 1.31026 * 120.00258 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99906 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46986 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46627 * 120.00255 * 12 10 8 15 15 H 1.48493 * 109.47403 * 240.00403 * 12 10 8 16 16 C 1.38033 * 114.45318 * 0.50417 * 7 6 5 17 17 S 1.70997 * 108.87251 * 359.73236 * 16 7 6 18 18 C 1.40024 * 118.14019 * 0.02562 * 4 3 2 19 19 C 1.37932 * 118.99042 * 359.97438 * 18 4 3 20 20 N 1.31913 * 119.54682 * 179.97438 * 2 1 3 21 21 H 1.09005 * 109.46973 * 269.99888 * 1 2 3 22 22 H 1.08991 * 109.47136 * 29.99811 * 1 2 3 23 23 H 1.08999 * 109.46963 * 150.00242 * 1 2 3 24 24 H 1.07999 * 120.50843 * 0.02562 * 3 2 1 25 25 H 0.96994 * 120.00169 * 179.97438 * 11 10 8 26 26 H 1.07998 * 125.56769 * 179.75943 * 16 7 6 27 27 H 1.08004 * 120.50787 * 179.97438 * 18 4 3 28 28 H 1.08000 * 119.54706 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2003 0.0000 4 6 3.5872 1.1866 0.0005 5 6 4.3593 2.4472 0.0000 6 7 5.6549 2.5281 0.0051 7 6 6.1618 3.7544 -0.0009 8 6 7.5507 4.0073 -0.0019 9 1 7.9145 5.0242 -0.0026 10 6 8.4545 2.9421 -0.0019 11 7 8.0132 1.7084 -0.0015 12 14 10.2923 3.2767 -0.0040 13 1 10.5286 4.7428 -0.0048 14 1 10.9058 2.6776 1.2084 15 1 10.9035 2.6758 -1.2165 16 6 5.2189 4.7625 -0.0007 17 16 3.6594 4.0611 -0.0001 18 6 4.2356 -0.0545 0.0005 19 6 3.4757 -1.2056 0.0005 20 7 2.1575 -1.1476 0.0005 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8899 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6483 2.1361 0.0004 25 1 8.6408 0.9689 -0.0018 26 1 5.4313 5.8214 -0.0014 27 1 5.3142 -0.1096 0.0005 28 1 3.9664 -2.1677 0.0009 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259915643.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:56 Heat of formation + Delta-G solvation = 64.660109 kcal Electronic energy + Delta-G solvation = -14556.626666 eV Core-core repulsion = 12084.837352 eV Total energy + Delta-G solvation = -2471.789314 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.79163 -37.87248 -33.64254 -32.65895 -32.21796 -28.92295 -27.39507 -25.76052 -24.29720 -22.67368 -20.95925 -18.83092 -17.75214 -16.18527 -15.62462 -15.30402 -15.20660 -14.68158 -14.26112 -13.64120 -13.07320 -13.01295 -12.82967 -12.18002 -12.11789 -11.75971 -11.68218 -11.31352 -11.20478 -10.81954 -10.47999 -9.84679 -9.82869 -9.20835 -9.19416 -8.61136 -8.25273 -8.06189 -7.36948 -6.63816 -4.47465 1.11113 1.49480 2.49558 2.66804 3.00828 3.05643 3.10512 3.46801 3.93347 4.04160 4.37326 4.57438 4.74809 5.20624 5.39920 5.41468 5.53765 5.62743 5.69397 5.90540 5.99583 6.10899 6.35584 6.65898 6.78500 6.96403 7.06823 7.12663 7.32684 8.08868 8.30001 8.41329 8.77107 9.42455 10.24401 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.031231 B = 0.006775 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.336670 B = 4131.968699 C = 5013.160009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.119 3.881 3 C -0.165 4.165 4 C 0.056 3.944 5 C 0.060 3.940 6 N -0.376 5.376 7 C 0.224 3.776 8 C -0.430 4.430 9 H 0.086 0.914 10 C 0.071 3.929 11 N -0.752 5.752 12 Si 0.913 3.087 13 H -0.261 1.261 14 H -0.273 1.273 15 H -0.273 1.273 16 C -0.443 4.443 17 S 0.002 5.998 18 C -0.139 4.139 19 C 0.096 3.904 20 N -0.495 5.495 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.133 0.867 25 H 0.274 0.726 26 H 0.143 0.857 27 H 0.153 0.847 28 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.598 -3.312 -0.002 8.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.019 4.019 3 C -0.187 4.187 4 C 0.044 3.956 5 C -0.218 4.218 6 N -0.091 5.091 7 C 0.100 3.900 8 C -0.465 4.465 9 H 0.104 0.896 10 C -0.151 4.151 11 N -0.375 5.375 12 Si 0.738 3.262 13 H -0.185 1.185 14 H -0.198 1.198 15 H -0.198 1.198 16 C -0.583 4.583 17 S 0.252 5.748 18 C -0.162 4.162 19 C -0.060 4.060 20 N -0.206 5.206 21 H 0.093 0.907 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.151 0.849 25 H 0.085 0.915 26 H 0.160 0.840 27 H 0.171 0.829 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -8.629 -4.332 0.005 9.655 hybrid contribution 2.486 1.305 0.009 2.808 sum -6.144 -3.026 0.014 6.848 Atomic orbital electron populations 1.20648 0.89082 1.03095 1.02763 1.21004 0.96684 0.88005 0.96170 1.21961 0.93435 0.99458 1.03828 1.18380 0.91743 0.90902 0.94576 1.25695 0.92841 0.94120 1.09154 1.67369 1.06023 1.25335 1.10370 1.17888 0.94977 0.83509 0.93643 1.19010 0.88070 0.94315 1.45069 0.89552 1.25982 1.01470 0.94713 0.92942 1.70082 1.36125 0.99023 1.32280 0.86173 0.81691 0.79841 0.78523 1.18472 1.19842 1.19837 1.25467 0.92913 1.02524 1.37430 1.82476 1.13014 1.03297 1.76001 1.22453 1.03011 0.91456 0.99231 1.22602 0.89041 0.98287 0.96076 1.67386 1.10375 1.29218 1.13631 0.90735 0.90911 0.90752 0.84900 0.91480 0.83961 0.82942 0.82761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.11 10.16 36.01 0.37 -0.74 15 2 C 0.12 1.84 6.78 -82.65 -0.56 1.28 15 3 C -0.16 -2.80 9.31 -39.02 -0.36 -3.16 15 4 C 0.06 1.12 5.91 -104.65 -0.62 0.50 15 5 C 0.06 1.39 7.32 -14.49 -0.11 1.29 15 6 N -0.38 -10.03 8.07 -9.16 -0.07 -10.10 15 7 C 0.22 6.14 6.45 -86.46 -0.56 5.59 15 8 C -0.43 -11.61 9.23 -37.93 -0.35 -11.96 15 9 H 0.09 2.21 7.84 -52.49 -0.41 1.80 15 10 C 0.07 1.81 5.49 -17.35 -0.10 1.72 15 11 N -0.75 -19.63 11.69 55.53 0.65 -18.98 15 12 Si 0.91 18.72 29.56 -169.99 -5.02 13.69 15 13 H -0.26 -5.27 7.11 56.52 0.40 -4.87 15 14 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 15 H -0.27 -5.51 7.11 56.52 0.40 -5.10 15 16 C -0.44 -11.07 10.99 30.66 0.34 -10.73 15 17 S 0.00 0.04 22.19 -107.50 -2.39 -2.34 15 18 C -0.14 -2.62 9.77 -39.02 -0.38 -3.00 15 19 C 0.10 1.56 11.17 -17.62 -0.20 1.36 15 20 N -0.49 -8.17 10.25 -9.57 -0.10 -8.27 15 21 H 0.07 0.75 8.14 -51.93 -0.42 0.32 15 22 H 0.07 0.70 8.07 -51.93 -0.42 0.28 15 23 H 0.07 0.79 8.14 -51.93 -0.42 0.36 15 24 H 0.13 2.05 7.40 -52.49 -0.39 1.66 15 25 H 0.27 6.48 8.30 -40.82 -0.34 6.14 15 26 H 0.14 3.35 8.06 -52.49 -0.42 2.93 15 27 H 0.15 3.09 7.89 -52.48 -0.41 2.68 15 28 H 0.16 2.00 8.06 -52.49 -0.42 1.58 15 LS Contribution 267.58 15.07 4.03 4.03 Total: -1.00 -29.27 267.58 -7.89 -37.16 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -2.46 Total: 2.67 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -2.53 Total: -17.86 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.48 Total: -37.35 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.69 kcal Atomic # 16 Polarization: 0.04 SS G_CDS: -2.39 Total: -2.34 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.27 -7.89 -37.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259915643.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.818 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds