Wall clock time and date at job start Mon Mar 30 2020 05:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38891 * 120.72065 * 2 1 4 4 C 1.38402 * 119.45494 * 179.97438 * 3 2 1 5 5 N 1.31641 * 120.94660 * 0.02562 * 4 3 2 6 6 C 1.33081 * 121.57156 * 359.97438 * 5 4 3 7 7 C 1.47161 * 119.77962 * 179.97438 * 6 5 4 8 8 S 1.72008 * 127.41023 * 180.09921 * 7 6 5 9 9 N 1.69397 * 96.24092 * 180.25017 * 8 7 6 10 10 C 1.29273 * 108.41167 * 359.80229 * 9 8 7 11 11 C 1.39817 * 117.06354 * 359.97438 * 10 9 8 12 12 C 1.40792 * 123.45075 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99903 * 204.51463 * 12 11 10 14 14 C 1.39967 * 119.99873 * 24.51399 * 12 11 10 15 15 N 1.30881 * 120.00171 * 10.53229 * 14 12 11 16 16 Si 1.86799 * 119.99858 * 190.53079 * 14 12 11 17 17 H 1.48501 * 109.47146 * 265.01729 * 16 14 12 18 18 H 1.48500 * 109.47161 * 25.01735 * 16 14 12 19 19 H 1.48499 * 109.46971 * 145.01961 * 16 14 12 20 20 C 1.38264 * 120.72902 * 180.25895 * 2 1 3 21 21 H 1.09005 * 109.47215 * 90.00717 * 1 2 3 22 22 H 1.09006 * 109.47087 * 209.99849 * 1 2 3 23 23 H 1.08992 * 109.47430 * 330.00271 * 1 2 3 24 24 H 1.08000 * 120.27122 * 359.97438 * 3 2 1 25 25 H 1.08007 * 119.52654 * 180.02562 * 4 3 2 26 26 H 1.07997 * 121.46805 * 180.02562 * 10 9 8 27 27 H 0.97000 * 119.99941 * 179.97438 * 15 14 12 28 28 H 1.08003 * 120.48321 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.1940 0.0000 4 6 3.6002 1.1634 0.0005 5 7 4.2520 0.0197 0.0005 6 6 3.6120 -1.1471 0.0005 7 6 4.3803 -2.4022 0.0000 8 16 3.7606 -4.0067 -0.0025 9 7 5.2651 -4.7852 0.0056 10 6 6.1914 -3.8835 0.0058 11 6 5.7787 -2.5476 -0.0010 12 6 6.6721 -1.4594 -0.0022 13 1 6.3556 -0.5005 0.3810 14 6 7.9703 -1.6203 -0.5000 15 7 8.2918 -2.7102 -1.1494 16 14 9.2440 -0.2794 -0.2376 17 1 9.2788 0.6099 -1.4264 18 1 8.8857 0.5153 0.9647 19 1 10.5802 -0.8973 -0.0425 20 6 2.2135 -1.1885 -0.0054 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5137 24 1 1.6928 2.1385 -0.0004 25 1 4.1531 2.0912 0.0010 26 1 7.2379 -4.1503 0.0101 27 1 9.1914 -2.8215 -1.4947 28 1 1.6934 -2.1350 -0.0092 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259917861.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:17 Heat of formation + Delta-G solvation = 51.581160 kcal Electronic energy + Delta-G solvation = -14771.306569 eV Core-core repulsion = 12298.950110 eV Total energy + Delta-G solvation = -2472.356460 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.17710 -37.29538 -33.72221 -33.29351 -31.54005 -29.18462 -27.27001 -25.88670 -23.27324 -22.19715 -21.04765 -19.01575 -17.51071 -15.98275 -15.55532 -15.26786 -14.89568 -14.57107 -13.72724 -13.68264 -12.85968 -12.64953 -12.39532 -12.15561 -12.13145 -11.82506 -11.68307 -11.47004 -11.11533 -10.75154 -10.56547 -9.89495 -9.57582 -9.15360 -8.98926 -8.75107 -8.35363 -7.46149 -7.37106 -7.20803 -4.52543 1.44092 2.07217 2.63419 2.87421 2.91668 2.99470 3.13533 3.46698 3.71946 3.77426 4.70591 5.08242 5.22420 5.30636 5.36427 5.78503 5.78766 5.88749 5.98832 6.06908 6.43260 6.51516 6.61218 6.76404 6.83870 6.94857 7.09811 7.39020 7.61958 7.78452 8.20320 8.42807 8.48157 9.05577 9.70924 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.021256 B = 0.009204 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.960591 B = 3041.423659 C = 4293.601892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.037 4.037 3 C -0.243 4.243 4 C 0.117 3.883 5 N -0.492 5.492 6 C 0.278 3.722 7 C -0.361 4.361 8 S 0.103 5.897 9 N -0.471 5.471 10 C 0.120 3.880 11 C 0.061 3.939 12 C -0.341 4.341 13 H 0.120 0.880 14 C 0.058 3.942 15 N -0.779 5.779 16 Si 0.931 3.069 17 H -0.265 1.265 18 H -0.254 1.254 19 H -0.273 1.273 20 C -0.212 4.212 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.115 0.885 25 H 0.141 0.859 26 H 0.185 0.815 27 H 0.293 0.707 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.412 5.354 1.297 7.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.044 4.044 3 C -0.264 4.264 4 C -0.043 4.043 5 N -0.203 5.203 6 C 0.145 3.855 7 C -0.486 4.486 8 S 0.250 5.750 9 N -0.285 5.285 10 C -0.089 4.089 11 C 0.046 3.954 12 C -0.374 4.374 13 H 0.138 0.862 14 C -0.163 4.163 15 N -0.403 5.403 16 Si 0.754 3.246 17 H -0.189 1.189 18 H -0.177 1.177 19 H -0.198 1.198 20 C -0.233 4.233 21 H 0.087 0.913 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.133 0.867 25 H 0.158 0.842 26 H 0.201 0.799 27 H 0.104 0.896 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.677 3.379 1.170 5.888 hybrid contribution 0.938 1.965 -0.135 2.181 sum -3.739 5.344 1.035 6.604 Atomic orbital electron populations 1.20736 0.91560 1.02322 1.02011 1.19961 0.95571 0.93120 0.95766 1.21626 0.95654 0.97410 1.11750 1.22595 0.91315 0.96227 0.94207 1.67960 1.39588 0.97239 1.15560 1.18460 0.88311 0.89519 0.89204 1.22026 0.95228 0.94175 1.37218 1.82618 1.15284 0.96478 1.80579 1.76065 0.99835 1.29760 1.22828 1.23506 1.00116 0.90262 0.94967 1.18273 0.90847 0.93128 0.93166 1.20085 0.92694 0.98674 1.25987 0.86198 1.26446 1.00027 0.97254 0.92622 1.69686 1.22078 1.25586 1.22966 0.85884 0.78014 0.80149 0.80562 1.18938 1.17692 1.19753 1.21742 0.94548 0.97749 1.09242 0.91340 0.91660 0.91815 0.86683 0.84165 0.79864 0.89607 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 10.06 36.00 0.36 -1.06 15 2 C -0.04 -0.65 5.91 -104.37 -0.62 -1.26 15 3 C -0.24 -4.10 9.82 -39.28 -0.39 -4.49 15 4 C 0.12 2.19 11.17 -17.57 -0.20 1.99 15 5 N -0.49 -11.26 7.76 -9.89 -0.08 -11.34 15 6 C 0.28 6.58 6.74 -83.08 -0.56 6.02 15 7 C -0.36 -9.15 6.51 -35.07 -0.23 -9.38 15 8 S 0.10 2.42 22.77 -107.50 -2.45 -0.02 15 9 N -0.47 -11.73 11.96 29.73 0.36 -11.37 15 10 C 0.12 3.01 9.99 -18.04 -0.18 2.83 15 11 C 0.06 1.57 5.57 -107.45 -0.60 0.97 15 12 C -0.34 -8.49 8.55 -37.97 -0.32 -8.82 15 13 H 0.12 3.01 6.05 -52.49 -0.32 2.69 15 14 C 0.06 1.31 5.36 -17.31 -0.09 1.22 15 15 N -0.78 -17.91 10.84 55.55 0.60 -17.31 15 16 Si 0.93 17.16 29.57 -169.99 -5.03 12.13 15 17 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 18 H -0.25 -4.68 7.11 56.52 0.40 -4.28 15 19 H -0.27 -4.83 7.11 56.52 0.40 -4.42 15 20 C -0.21 -4.33 9.37 -38.95 -0.37 -4.69 15 21 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.06 0.80 8.10 -51.93 -0.42 0.38 15 23 H 0.06 0.71 8.10 -51.93 -0.42 0.29 15 24 H 0.12 1.57 8.06 -52.49 -0.42 1.15 15 25 H 0.14 2.17 8.06 -52.48 -0.42 1.75 15 26 H 0.19 4.46 6.28 -52.49 -0.33 4.13 15 27 H 0.29 6.00 8.30 -40.82 -0.34 5.67 15 28 H 0.12 2.33 7.42 -52.48 -0.39 1.94 15 LS Contribution 261.80 15.07 3.95 3.95 Total: -1.00 -27.33 261.80 -8.12 -35.44 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -2.28 Total: 5.20 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -3.19 Total: -16.67 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.88 Total: -40.02 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.45 Total: -0.02 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.33 -8.12 -35.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259917861.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.024 kcal (2) G-P(sol) polarization free energy of solvation -27.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds