Wall clock time and date at job start Mon Mar 30 2020 05:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38891 * 120.72065 * 2 1 4 4 C 1.38402 * 119.45494 * 179.97438 * 3 2 1 5 5 N 1.31641 * 120.94660 * 0.02562 * 4 3 2 6 6 C 1.33081 * 121.57156 * 359.97438 * 5 4 3 7 7 C 1.47161 * 119.77962 * 179.97438 * 6 5 4 8 8 S 1.72008 * 127.41023 * 180.09921 * 7 6 5 9 9 N 1.69397 * 96.24092 * 180.25017 * 8 7 6 10 10 C 1.29273 * 108.41167 * 359.80229 * 9 8 7 11 11 C 1.39817 * 117.06354 * 359.97438 * 10 9 8 12 12 C 1.40792 * 123.45075 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99903 * 204.51463 * 12 11 10 14 14 C 1.39967 * 119.99873 * 24.51399 * 12 11 10 15 15 N 1.30881 * 120.00171 * 10.53229 * 14 12 11 16 16 Si 1.86799 * 119.99858 * 190.53079 * 14 12 11 17 17 H 1.48501 * 109.47146 * 265.01729 * 16 14 12 18 18 H 1.48500 * 109.47161 * 25.01735 * 16 14 12 19 19 H 1.48499 * 109.46971 * 145.01961 * 16 14 12 20 20 C 1.38264 * 120.72902 * 180.25895 * 2 1 3 21 21 H 1.09005 * 109.47215 * 90.00717 * 1 2 3 22 22 H 1.09006 * 109.47087 * 209.99849 * 1 2 3 23 23 H 1.08992 * 109.47430 * 330.00271 * 1 2 3 24 24 H 1.08000 * 120.27122 * 359.97438 * 3 2 1 25 25 H 1.08007 * 119.52654 * 180.02562 * 4 3 2 26 26 H 1.07997 * 121.46805 * 180.02562 * 10 9 8 27 27 H 0.97000 * 119.99941 * 179.97438 * 15 14 12 28 28 H 1.08003 * 120.48321 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.1940 0.0000 4 6 3.6002 1.1634 0.0005 5 7 4.2520 0.0197 0.0005 6 6 3.6120 -1.1471 0.0005 7 6 4.3803 -2.4022 0.0000 8 16 3.7606 -4.0067 -0.0025 9 7 5.2651 -4.7852 0.0056 10 6 6.1914 -3.8835 0.0058 11 6 5.7787 -2.5476 -0.0010 12 6 6.6721 -1.4594 -0.0022 13 1 6.3556 -0.5005 0.3810 14 6 7.9703 -1.6203 -0.5000 15 7 8.2918 -2.7102 -1.1494 16 14 9.2440 -0.2794 -0.2376 17 1 9.2788 0.6099 -1.4264 18 1 8.8857 0.5153 0.9647 19 1 10.5802 -0.8973 -0.0425 20 6 2.2135 -1.1885 -0.0054 21 1 -0.3634 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3634 0.8899 0.5137 24 1 1.6928 2.1385 -0.0004 25 1 4.1531 2.0912 0.0010 26 1 7.2379 -4.1503 0.0101 27 1 9.1914 -2.8215 -1.4947 28 1 1.6934 -2.1350 -0.0092 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259917861.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:17 Heat of formation + Delta-G solvation = 36.595858 kcal Electronic energy + Delta-G solvation = -14771.956381 eV Core-core repulsion = 12298.950110 eV Total energy + Delta-G solvation = -2473.006271 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.71876 -39.12931 -35.47863 -34.70579 -33.18870 -30.90423 -28.55729 -27.59350 -25.04091 -23.73213 -22.69404 -20.76197 -19.26520 -17.66325 -17.22459 -16.75514 -16.49034 -16.13245 -15.34246 -15.14279 -14.47355 -14.26949 -13.96147 -13.56365 -13.45211 -13.30957 -13.25346 -12.99080 -12.78970 -12.21695 -12.04948 -11.69135 -11.29979 -10.94255 -10.74375 -10.22046 -9.93229 -9.26673 -9.13030 -8.89825 -6.34963 -0.27154 0.59584 0.96495 1.26741 1.34302 1.40235 1.55586 1.63091 2.02110 2.18983 3.05411 3.34412 3.84661 3.93821 4.05686 4.42710 4.48904 4.55076 4.79973 4.84008 4.88141 4.92884 5.12108 5.17558 5.19222 5.32289 5.57143 5.66088 5.92521 6.09658 6.38547 6.58103 6.69241 7.49306 8.06349 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.021256 B = 0.009204 C = 0.006520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.960591 B = 3041.423659 C = 4293.601892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.036 4.036 3 C -0.221 4.221 4 C 0.099 3.901 5 N -0.523 5.523 6 C 0.243 3.757 7 C -0.387 4.387 8 S 0.129 5.871 9 N -0.490 5.490 10 C 0.114 3.886 11 C 0.030 3.970 12 C -0.371 4.371 13 H 0.111 0.889 14 C 0.027 3.973 15 N -0.805 5.805 16 Si 1.000 3.000 17 H -0.262 1.262 18 H -0.256 1.256 19 H -0.257 1.257 20 C -0.223 4.223 21 H 0.084 0.916 22 H 0.070 0.930 23 H 0.090 0.910 24 H 0.160 0.840 25 H 0.171 0.829 26 H 0.185 0.815 27 H 0.303 0.697 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.699 7.714 1.317 9.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.044 4.044 3 C -0.241 4.241 4 C -0.060 4.060 5 N -0.235 5.235 6 C 0.109 3.891 7 C -0.512 4.512 8 S 0.277 5.723 9 N -0.305 5.305 10 C -0.094 4.094 11 C 0.016 3.984 12 C -0.405 4.405 13 H 0.129 0.871 14 C -0.192 4.192 15 N -0.430 5.430 16 Si 0.819 3.181 17 H -0.187 1.187 18 H -0.179 1.179 19 H -0.181 1.181 20 C -0.244 4.244 21 H 0.103 0.897 22 H 0.089 0.911 23 H 0.109 0.891 24 H 0.178 0.822 25 H 0.188 0.812 26 H 0.202 0.798 27 H 0.115 0.885 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.979 5.722 1.188 8.361 hybrid contribution 1.086 1.363 -0.150 1.750 sum -4.893 7.085 1.038 8.673 Atomic orbital electron populations 1.20828 0.87906 1.04031 1.03533 1.20528 0.98156 0.92057 0.93636 1.22149 0.94982 0.99092 1.07885 1.23228 0.92889 0.96040 0.93829 1.67873 1.41205 0.98155 1.16315 1.18617 0.89595 0.89353 0.91507 1.22537 0.95626 0.95671 1.37383 1.82251 1.14261 0.95789 1.79956 1.75954 1.00559 1.30321 1.23649 1.23507 1.00202 0.90297 0.95381 1.18592 0.91663 0.93750 0.94405 1.20131 0.94089 0.98193 1.28049 0.87093 1.27214 1.00984 0.99403 0.91600 1.69683 1.23141 1.26957 1.23256 0.84892 0.75858 0.77221 0.80113 1.18708 1.17934 1.18139 1.21877 0.93531 0.99367 1.09631 0.89703 0.91084 0.89101 0.82229 0.81166 0.79849 0.88503 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.29 10.06 71.24 0.72 -1.57 15 2 C -0.04 -1.16 5.91 -19.70 -0.12 -1.27 15 3 C -0.22 -6.56 9.82 22.47 0.22 -6.34 15 4 C 0.10 3.51 11.17 84.76 0.95 4.46 15 5 N -0.52 -23.99 7.76 -185.19 -1.44 -25.43 15 6 C 0.24 11.62 6.74 41.70 0.28 11.90 15 7 C -0.39 -20.22 6.51 25.19 0.16 -20.06 15 8 S 0.13 6.23 22.77 -56.49 -1.29 4.95 15 9 N -0.49 -25.20 11.96 -59.85 -0.72 -25.92 15 10 C 0.11 5.96 9.99 85.45 0.85 6.82 15 11 C 0.03 1.64 5.57 -21.70 -0.12 1.52 15 12 C -0.37 -19.18 8.55 23.31 0.20 -18.98 15 13 H 0.11 5.78 6.05 -2.91 -0.02 5.77 15 14 C 0.03 1.22 5.36 85.25 0.46 1.68 15 15 N -0.81 -37.86 10.84 21.84 0.24 -37.62 15 16 Si 1.00 35.16 29.57 68.60 2.03 37.19 15 17 H -0.26 -9.06 7.11 99.48 0.71 -8.35 15 18 H -0.26 -8.97 7.11 99.48 0.71 -8.27 15 19 H -0.26 -8.33 7.11 99.48 0.71 -7.63 15 20 C -0.22 -8.94 9.37 22.68 0.21 -8.73 15 21 H 0.08 1.61 8.14 -2.38 -0.02 1.59 15 22 H 0.07 1.47 8.10 -2.38 -0.02 1.45 15 23 H 0.09 1.50 8.10 -2.39 -0.02 1.48 15 24 H 0.16 3.35 8.06 -2.91 -0.02 3.33 15 25 H 0.17 4.79 8.06 -2.91 -0.02 4.77 15 26 H 0.19 9.38 6.28 -2.91 -0.02 9.36 15 27 H 0.30 12.55 8.30 -92.71 -0.77 11.79 15 28 H 0.12 4.66 7.42 -2.91 -0.02 4.63 15 Total: -1.00 -61.31 261.80 3.83 -57.48 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 1.19 Total: 19.92 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 3.81 Total: -30.57 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -1.92 Total: -88.97 kcal Atomic # 14 Polarization: 35.16 SS G_CDS: 2.03 Total: 37.19 kcal Atomic # 16 Polarization: 6.23 SS G_CDS: -1.29 Total: 4.95 kcal Total: -61.31 3.83 -57.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259917861.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.076 kcal (2) G-P(sol) polarization free energy of solvation -61.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds