Wall clock time and date at job start Mon Mar 30 2020 05:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86805 * 119.99766 * 2 1 4 4 H 1.48499 * 109.47014 * 240.00144 * 3 2 1 5 5 H 1.48497 * 109.47387 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47016 * 120.00606 * 3 2 1 7 7 C 1.39946 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 197.53228 * 7 2 1 9 9 C 1.41098 * 119.99505 * 17.24465 * 7 2 1 10 10 C 1.40732 * 120.29971 * 25.05408 * 9 7 2 11 11 C 1.36470 * 119.93593 * 179.76054 * 10 9 7 12 12 C 1.38844 * 120.56579 * 0.51049 * 11 10 9 13 13 C 1.38249 * 120.60577 * 359.74652 * 12 11 10 14 14 C 1.38580 * 120.04227 * 359.97438 * 13 12 11 15 15 N 1.39449 * 120.27915 * 179.97438 * 14 13 12 16 16 C 1.37834 * 126.54442 * 64.71112 * 15 14 13 17 17 C 1.34421 * 106.95681 * 179.83880 * 16 15 14 18 18 N 1.34382 * 108.43765 * 0.42764 * 17 16 15 19 19 C 1.31274 * 109.36130 * 359.72892 * 18 17 16 20 20 S 1.76204 * 125.83359 * 180.02562 * 19 18 17 21 21 H 0.96994 * 119.99484 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.03068 * 0.02562 * 10 9 7 23 23 H 1.08007 * 119.71709 * 180.25607 * 11 10 9 24 24 H 1.08000 * 119.69991 * 179.75447 * 12 11 10 25 25 H 1.08001 * 119.98235 * 180.02562 * 13 12 11 26 26 H 1.08004 * 126.51673 * 359.97438 * 16 15 14 27 27 H 1.08005 * 125.77752 * 180.15629 * 17 16 15 28 28 H 1.41003 * 99.99906 * 269.99523 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0962 1.6965 -1.2125 5 1 1.2776 2.7465 0.0006 6 1 3.0964 1.6964 1.2124 7 6 2.0084 -1.2119 -0.0005 8 1 3.0507 -1.2338 0.2812 9 6 1.3504 -2.4062 -0.3633 10 6 0.2196 -2.3678 -1.2002 11 6 -0.4082 -3.5279 -1.5504 12 6 0.0526 -4.7500 -1.0794 13 6 1.1581 -4.8139 -0.2518 14 6 1.8182 -3.6520 0.1151 15 7 2.9336 -3.7106 0.9500 16 6 4.1450 -4.3012 0.6611 17 6 4.9332 -4.1251 1.7355 18 7 4.2359 -3.4556 2.6690 19 6 3.0322 -3.1991 2.2124 20 16 1.7612 -2.3406 3.0798 21 1 -0.4849 0.8400 0.0004 22 1 -0.1485 -1.4216 -1.5684 23 1 -1.2733 -3.4947 -2.1962 24 1 -0.4573 -5.6591 -1.3622 25 1 1.5081 -5.7700 0.1084 26 1 4.4110 -4.8072 -0.2553 27 1 5.9528 -4.4678 1.8338 28 1 1.1295 -3.4243 3.7239 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259929572.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:36 Heat of formation + Delta-G solvation = 86.723066 kcal Electronic energy + Delta-G solvation = -15341.621377 eV Core-core repulsion = 12870.788785 eV Total energy + Delta-G solvation = -2470.832592 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.21714 -37.69647 -33.93883 -32.98640 -29.93193 -28.93649 -28.28633 -25.47526 -22.21493 -21.45080 -20.56770 -20.13597 -17.81935 -17.22599 -16.05277 -15.49938 -14.66160 -14.52477 -13.83915 -13.68907 -13.24063 -12.88926 -12.79185 -12.53185 -11.83332 -11.47434 -11.26328 -11.05523 -10.62121 -10.45885 -10.14013 -9.96850 -9.56799 -9.35559 -8.98519 -7.91362 -7.73692 -7.64865 -7.31418 -6.97593 -4.59384 1.97532 2.24280 2.63338 2.72777 2.99644 3.04261 3.12306 3.20412 3.77925 3.82346 3.89826 4.41538 5.32777 5.48722 5.80080 5.91703 6.13486 6.16195 6.35547 6.72704 6.86974 6.87532 7.05243 7.14786 7.26202 7.44419 7.65510 7.81453 7.97181 8.04649 8.38056 8.52995 8.58485 8.71190 9.93703 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.017301 B = 0.012799 C = 0.009093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.016516 B = 2187.113017 C = 3078.401713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.085 3.915 3 Si 0.904 3.096 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.427 4.427 8 H 0.077 0.923 9 C 0.139 3.861 10 C -0.149 4.149 11 C -0.094 4.094 12 C -0.241 4.241 13 C -0.066 4.066 14 C -0.061 4.061 15 N -0.336 5.336 16 C -0.034 4.034 17 C -0.048 4.048 18 N -0.466 5.466 19 C 0.189 3.811 20 S 0.002 5.998 21 H 0.286 0.714 22 H 0.126 0.874 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.168 0.832 27 H 0.166 0.834 28 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.632 -2.476 -0.390 2.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.137 4.137 3 Si 0.727 3.273 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.455 4.455 8 H 0.095 0.905 9 C 0.135 3.865 10 C -0.168 4.168 11 C -0.112 4.112 12 C -0.261 4.261 13 C -0.085 4.085 14 C -0.153 4.153 15 N -0.011 5.011 16 C -0.173 4.173 17 C -0.201 4.201 18 N -0.187 5.187 19 C -0.180 4.180 20 S 0.155 5.845 21 H 0.098 0.902 22 H 0.144 0.856 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.109 0.891 26 H 0.186 0.814 27 H 0.183 0.817 28 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 0.968 -1.391 0.708 1.836 hybrid contribution 0.507 -0.864 -0.946 1.377 sum 1.474 -2.254 -0.238 2.704 Atomic orbital electron populations 1.69794 1.07593 1.30007 1.31755 1.25867 0.94713 1.01388 0.91697 0.86383 0.80464 0.79835 0.80571 1.18663 1.19882 1.18268 1.19434 0.97909 0.90912 1.37226 0.90465 1.17378 0.90889 0.90207 0.88015 1.21030 0.98224 0.97445 1.00127 1.20531 0.98479 0.93129 0.99096 1.20167 1.01158 0.96706 1.08071 1.20396 0.95404 0.94872 0.97842 1.17488 0.95564 0.95343 1.06921 1.43068 1.09911 1.36917 1.11202 1.23006 0.86671 1.05594 1.01998 1.22201 1.00431 1.05627 0.91873 1.70815 1.02255 1.15384 1.30286 1.24342 0.98099 1.08157 0.87365 1.87066 1.32463 1.08459 1.56485 0.90240 0.85629 0.88815 0.88739 0.89093 0.81448 0.81704 0.97344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.07 10.96 55.55 0.61 -17.46 15 2 C 0.09 1.99 5.15 -17.33 -0.09 1.90 15 3 Si 0.90 18.09 29.59 -169.99 -5.03 13.06 15 4 H -0.26 -5.23 7.11 56.52 0.40 -4.82 15 5 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 15 7 C -0.43 -10.61 7.16 -37.86 -0.27 -10.88 15 8 H 0.08 2.02 7.28 -52.49 -0.38 1.63 15 9 C 0.14 3.43 5.46 -106.66 -0.58 2.85 15 10 C -0.15 -3.52 8.64 -39.28 -0.34 -3.86 15 11 C -0.09 -2.00 9.97 -40.00 -0.40 -2.40 15 12 C -0.24 -4.99 10.04 -39.35 -0.40 -5.39 15 13 C -0.07 -1.42 9.91 -39.45 -0.39 -1.81 15 14 C -0.06 -1.43 5.51 -83.06 -0.46 -1.89 15 15 N -0.34 -7.51 2.30 -60.25 -0.14 -7.64 15 16 C -0.03 -0.65 11.49 -16.20 -0.19 -0.83 15 17 C -0.05 -0.91 11.84 -17.78 -0.21 -1.12 15 18 N -0.47 -10.21 11.29 -13.33 -0.15 -10.36 15 19 C 0.19 4.30 7.25 -88.32 -0.64 3.66 15 20 S 0.00 0.05 24.74 -107.50 -2.66 -2.61 15 21 H 0.29 6.14 8.30 -40.82 -0.34 5.80 15 22 H 0.13 3.02 6.18 -52.49 -0.32 2.70 15 23 H 0.09 1.76 8.06 -52.48 -0.42 1.33 15 24 H 0.09 1.71 8.06 -52.49 -0.42 1.29 15 25 H 0.09 1.80 8.06 -52.49 -0.42 1.37 15 26 H 0.17 2.68 8.06 -52.48 -0.42 2.26 15 27 H 0.17 2.44 8.06 -52.48 -0.42 2.02 15 28 H 0.06 1.20 9.55 96.90 0.93 2.12 15 LS Contribution 264.20 15.07 3.98 3.98 Total: -1.00 -26.47 264.20 -8.38 -34.84 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -1.03 Total: 5.96 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -3.96 Total: -19.76 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.32 Total: -35.47 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.66 Total: -2.61 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -26.47 -8.38 -34.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259929572.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.568 kcal (2) G-P(sol) polarization free energy of solvation -26.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds