Wall clock time and date at job start Mon Mar 30 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30857 * 1 3 3 Si 1.86805 * 119.99766 * 2 1 4 4 H 1.48499 * 109.47014 * 240.00144 * 3 2 1 5 5 H 1.48497 * 109.47387 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47016 * 120.00606 * 3 2 1 7 7 C 1.39946 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 197.53228 * 7 2 1 9 9 C 1.41098 * 119.99505 * 17.24465 * 7 2 1 10 10 C 1.40732 * 120.29971 * 25.05408 * 9 7 2 11 11 C 1.36470 * 119.93593 * 179.76054 * 10 9 7 12 12 C 1.38844 * 120.56579 * 0.51049 * 11 10 9 13 13 C 1.38249 * 120.60577 * 359.74652 * 12 11 10 14 14 C 1.38580 * 120.04227 * 359.97438 * 13 12 11 15 15 N 1.39449 * 120.27915 * 179.97438 * 14 13 12 16 16 C 1.37834 * 126.54442 * 64.71112 * 15 14 13 17 17 C 1.34421 * 106.95681 * 179.83880 * 16 15 14 18 18 N 1.34382 * 108.43765 * 0.42764 * 17 16 15 19 19 C 1.31274 * 109.36130 * 359.72892 * 18 17 16 20 20 S 1.76204 * 125.83359 * 180.02562 * 19 18 17 21 21 H 0.96994 * 119.99484 * 359.97438 * 1 2 3 22 22 H 1.08001 * 120.03068 * 0.02562 * 10 9 7 23 23 H 1.08007 * 119.71709 * 180.25607 * 11 10 9 24 24 H 1.08000 * 119.69991 * 179.75447 * 12 11 10 25 25 H 1.08001 * 119.98235 * 180.02562 * 13 12 11 26 26 H 1.08004 * 126.51673 * 359.97438 * 16 15 14 27 27 H 1.08005 * 125.77752 * 180.15629 * 17 16 15 28 28 H 1.41003 * 99.99906 * 269.99523 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0962 1.6965 -1.2125 5 1 1.2776 2.7465 0.0006 6 1 3.0964 1.6964 1.2124 7 6 2.0084 -1.2119 -0.0005 8 1 3.0507 -1.2338 0.2812 9 6 1.3504 -2.4062 -0.3633 10 6 0.2196 -2.3678 -1.2002 11 6 -0.4082 -3.5279 -1.5504 12 6 0.0526 -4.7500 -1.0794 13 6 1.1581 -4.8139 -0.2518 14 6 1.8182 -3.6520 0.1151 15 7 2.9336 -3.7106 0.9500 16 6 4.1450 -4.3012 0.6611 17 6 4.9332 -4.1251 1.7355 18 7 4.2359 -3.4556 2.6690 19 6 3.0322 -3.1991 2.2124 20 16 1.7612 -2.3406 3.0798 21 1 -0.4849 0.8400 0.0004 22 1 -0.1485 -1.4216 -1.5684 23 1 -1.2733 -3.4947 -2.1962 24 1 -0.4573 -5.6591 -1.3622 25 1 1.5081 -5.7700 0.1084 26 1 4.4110 -4.8072 -0.2553 27 1 5.9528 -4.4678 1.8338 28 1 1.1295 -3.4243 3.7239 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259929572.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:35 Heat of formation + Delta-G solvation = 74.164912 kcal Electronic energy + Delta-G solvation = -15342.165939 eV Core-core repulsion = 12870.788785 eV Total energy + Delta-G solvation = -2471.377155 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.81867 -39.40061 -35.67634 -34.64002 -31.66584 -30.53360 -29.93629 -27.23069 -23.87323 -23.15158 -22.18749 -21.74260 -19.53607 -18.94015 -17.70649 -17.20901 -16.32532 -16.15210 -15.45374 -15.26314 -14.84441 -14.52399 -14.44811 -14.12613 -13.54962 -13.20121 -12.92384 -12.71688 -12.22656 -12.11010 -11.81067 -11.69063 -11.20025 -11.09033 -10.65227 -9.51770 -9.44991 -9.32856 -9.00793 -8.70074 -6.39562 0.36062 0.56155 0.95167 1.03119 1.37186 1.44801 1.50350 1.65485 2.17575 2.19372 2.29395 2.68146 3.56822 3.98895 4.28649 4.41744 4.52938 4.63449 4.76099 5.02688 5.15054 5.21734 5.35468 5.45131 5.71715 5.77936 5.93398 6.08286 6.22386 6.33488 6.62549 6.80860 6.88528 7.01893 8.23455 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.017301 B = 0.012799 C = 0.009093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.016516 B = 2187.113017 C = 3078.401713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.057 3.943 3 Si 0.955 3.045 4 H -0.261 1.261 5 H -0.257 1.257 6 H -0.270 1.270 7 C -0.448 4.448 8 H 0.054 0.946 9 C 0.118 3.882 10 C -0.172 4.172 11 C -0.093 4.093 12 C -0.233 4.233 13 C -0.073 4.073 14 C -0.069 4.069 15 N -0.347 5.347 16 C -0.036 4.036 17 C -0.046 4.046 18 N -0.484 5.484 19 C 0.163 3.837 20 S -0.021 6.021 21 H 0.294 0.706 22 H 0.114 0.886 23 H 0.121 0.879 24 H 0.127 0.873 25 H 0.110 0.890 26 H 0.199 0.801 27 H 0.206 0.794 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.844 -3.557 -1.028 4.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.162 4.162 3 Si 0.777 3.223 4 H -0.186 1.186 5 H -0.181 1.181 6 H -0.195 1.195 7 C -0.476 4.476 8 H 0.072 0.928 9 C 0.114 3.886 10 C -0.191 4.191 11 C -0.111 4.111 12 C -0.252 4.252 13 C -0.092 4.092 14 C -0.161 4.161 15 N -0.023 5.023 16 C -0.174 4.174 17 C -0.198 4.198 18 N -0.206 5.206 19 C -0.205 4.205 20 S 0.132 5.868 21 H 0.105 0.895 22 H 0.132 0.868 23 H 0.139 0.861 24 H 0.145 0.855 25 H 0.128 0.872 26 H 0.216 0.784 27 H 0.223 0.777 28 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 1.170 -2.480 0.067 2.743 hybrid contribution 0.455 -0.693 -0.756 1.122 sum 1.625 -3.173 -0.689 3.631 Atomic orbital electron populations 1.69800 1.08275 1.31002 1.32309 1.26368 0.95316 1.03315 0.91230 0.85628 0.79513 0.77353 0.79800 1.18563 1.18070 1.19474 1.19288 0.96982 0.92127 1.39240 0.92790 1.17626 0.91575 0.90847 0.88554 1.21045 0.98964 0.98004 1.01124 1.20852 0.98818 0.92645 0.98783 1.20574 1.00433 0.97652 1.06581 1.20675 0.95513 0.95112 0.97886 1.17693 0.96139 0.95551 1.06728 1.43187 1.10633 1.37447 1.11030 1.23634 0.85551 1.04938 1.03277 1.22886 1.01775 1.04295 0.90845 1.70799 1.02295 1.16056 1.31481 1.24421 0.98637 1.09396 0.88035 1.87008 1.33114 1.09889 1.56820 0.89502 0.86796 0.86104 0.85477 0.87213 0.78387 0.77750 0.95504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.59 10.96 21.83 0.24 -37.35 15 2 C 0.06 2.71 5.15 85.25 0.44 3.15 15 3 Si 0.96 37.45 29.59 68.60 2.03 39.48 15 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 15 5 H -0.26 -9.25 7.11 99.48 0.71 -8.55 15 6 H -0.27 -10.97 7.11 99.48 0.71 -10.26 15 7 C -0.45 -22.74 7.16 23.39 0.17 -22.58 15 8 H 0.05 2.91 7.28 -2.91 -0.02 2.89 15 9 C 0.12 5.84 5.46 -21.19 -0.12 5.72 15 10 C -0.17 -8.10 8.64 22.47 0.19 -7.91 15 11 C -0.09 -3.78 9.97 22.00 0.22 -3.56 15 12 C -0.23 -8.95 10.04 22.42 0.23 -8.73 15 13 C -0.07 -2.97 9.91 22.35 0.22 -2.75 15 14 C -0.07 -3.18 5.51 38.79 0.21 -2.97 15 15 N -0.35 -15.24 2.30 -344.52 -0.79 -16.04 15 16 C -0.04 -1.32 11.49 82.88 0.95 -0.37 15 17 C -0.05 -1.62 11.84 83.43 0.99 -0.63 15 18 N -0.48 -20.82 11.29 -196.07 -2.21 -23.04 15 19 C 0.16 7.39 7.25 179.54 1.30 8.69 15 20 S -0.02 -0.93 24.74 -56.49 -1.40 -2.32 15 21 H 0.29 12.65 8.30 -92.71 -0.77 11.88 15 22 H 0.11 5.56 6.18 -2.91 -0.02 5.54 15 23 H 0.12 4.19 8.06 -2.91 -0.02 4.17 15 24 H 0.13 4.05 8.06 -2.91 -0.02 4.02 15 25 H 0.11 4.02 8.06 -2.91 -0.02 4.00 15 26 H 0.20 5.76 8.06 -2.91 -0.02 5.74 15 27 H 0.21 5.34 8.06 -2.91 -0.02 5.32 15 28 H 0.08 3.10 9.55 73.80 0.70 3.81 15 Total: -1.00 -56.57 264.20 4.57 -52.00 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 1.90 Total: 19.18 kcal Atomic # 6 Polarization: -36.72 SS G_CDS: 4.80 Total: -31.91 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -2.77 Total: -76.42 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -1.40 Total: -2.32 kcal Total: -56.57 4.57 -52.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259929572.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.161 kcal (2) G-P(sol) polarization free energy of solvation -56.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds