Wall clock time and date at job start Mon Mar 30 2020 05:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00079 * 2 1 4 4 H 1.48502 * 109.47262 * 270.00082 * 3 2 1 5 5 H 1.48501 * 109.47066 * 30.00076 * 3 2 1 6 6 H 1.48497 * 109.47307 * 150.00316 * 3 2 1 7 7 C 1.37879 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00145 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47019 * 180.02562 * 9 7 2 11 11 C 1.37888 * 120.50558 * 265.02174 * 10 9 7 12 12 N 1.31970 * 120.90488 * 179.97438 * 11 10 9 13 13 C 1.32001 * 122.05987 * 0.02716 * 12 11 10 14 14 C 1.37849 * 120.90224 * 359.73753 * 13 12 11 15 15 C 1.40007 * 120.50613 * 85.00359 * 10 9 7 16 16 C 1.47775 * 120.92680 * 359.97438 * 15 10 9 17 17 C 1.35114 * 126.10523 * 129.99772 * 16 15 10 18 18 N 1.31365 * 114.22619 * 179.74187 * 17 16 15 19 19 C 1.29173 * 117.29558 * 359.97438 * 18 17 16 20 20 S 1.70951 * 110.36546 * 0.02562 * 19 18 17 21 21 H 0.96998 * 120.00025 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.46835 * 60.00469 * 9 7 2 23 23 H 1.08995 * 109.47382 * 300.00522 * 9 7 2 24 24 H 1.07999 * 119.54647 * 359.97438 * 11 10 9 25 25 H 1.07996 * 119.54620 * 179.97438 * 13 12 11 26 26 H 1.07993 * 120.49967 * 180.26963 * 14 13 12 27 27 H 1.08004 * 122.88642 * 359.77847 * 17 16 15 28 28 H 1.08000 * 124.81920 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6068 -4.2436 -1.1841 12 7 3.4641 -5.2468 -1.1933 13 6 3.9980 -5.7225 -0.0837 14 6 3.6813 -5.1801 1.1434 15 6 2.7720 -4.1165 1.2011 16 6 2.3991 -3.5056 2.4940 17 6 1.9874 -4.1670 3.5979 18 7 1.7204 -3.3906 4.6233 19 6 1.8791 -2.1190 4.4607 20 16 2.4196 -1.7851 2.8737 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.1944 -3.8868 -2.1163 25 1 4.6953 -6.5453 -0.1384 26 1 4.1252 -5.5715 2.0467 27 1 1.8870 -5.2418 3.6342 28 1 1.6954 -1.3727 5.2194 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259936098.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:58 Heat of formation + Delta-G solvation = 69.365422 kcal Electronic energy + Delta-G solvation = -15001.550963 eV Core-core repulsion = 12529.965686 eV Total energy + Delta-G solvation = -2471.585276 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.75840 -38.69254 -34.21984 -32.77031 -31.43738 -28.90138 -27.41245 -25.13026 -23.76045 -22.60512 -20.87389 -19.47934 -17.85062 -16.56225 -16.15578 -15.76730 -14.96649 -14.40973 -14.24691 -13.72382 -13.38236 -13.27324 -12.80107 -12.53518 -12.31885 -11.71160 -11.44803 -10.99857 -10.81328 -10.70068 -10.03803 -9.81794 -9.46831 -9.00489 -8.96276 -8.59086 -8.41610 -8.28887 -8.02597 -6.27460 -4.29339 0.96238 1.69773 1.79167 2.23365 2.57007 3.16695 3.24523 3.26712 3.37235 4.21015 4.40321 4.83752 4.94436 5.08780 5.11930 5.35631 5.56950 5.67111 5.71870 5.98860 6.12396 6.36667 6.44673 6.66415 6.76478 7.18708 7.34210 7.47339 7.66778 8.02834 8.24858 8.47303 8.71375 9.30209 10.80939 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.017918 B = 0.011524 C = 0.007849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.332866 B = 2429.047225 C = 3566.384372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.073 3.927 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.504 4.504 8 H 0.060 0.940 9 C 0.046 3.954 10 C -0.073 4.073 11 C 0.093 3.907 12 N -0.488 5.488 13 C 0.068 3.932 14 C -0.155 4.155 15 C 0.015 3.985 16 C -0.193 4.193 17 C 0.032 3.968 18 N -0.486 5.486 19 C -0.062 4.062 20 S 0.278 5.722 21 H 0.266 0.734 22 H 0.036 0.964 23 H 0.034 0.966 24 H 0.155 0.845 25 H 0.148 0.852 26 H 0.128 0.872 27 H 0.165 0.835 28 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.105 -4.809 4.145 8.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.132 4.132 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.545 4.545 8 H 0.078 0.922 9 C 0.008 3.992 10 C -0.077 4.077 11 C -0.064 4.064 12 N -0.197 5.197 13 C -0.088 4.088 14 C -0.177 4.177 15 C 0.005 3.995 16 C -0.316 4.316 17 C -0.125 4.125 18 N -0.200 5.200 19 C -0.355 4.355 20 S 0.541 5.459 21 H 0.076 0.924 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.172 0.828 25 H 0.165 0.835 26 H 0.146 0.854 27 H 0.182 0.818 28 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 5.229 -4.235 3.492 7.581 hybrid contribution -0.049 0.409 0.864 0.958 sum 5.180 -3.825 4.356 7.774 Atomic orbital electron populations 1.69935 1.06074 1.27348 1.47986 1.24936 0.94769 0.99056 0.94454 0.86707 0.80274 0.83288 0.78807 1.20176 1.20732 1.19207 1.20949 0.92997 0.89559 1.51011 0.92218 1.18422 0.92463 0.89089 0.99201 1.21833 0.97119 0.96837 0.91890 1.22584 0.94163 0.91802 0.97860 1.67580 1.08949 1.11735 1.31412 1.22371 0.99176 0.99507 0.87759 1.22078 0.98864 0.97390 0.99397 1.18134 0.96217 0.94797 0.90334 1.24362 1.11650 0.97386 0.98204 1.21809 1.02643 1.00630 0.87400 1.66196 1.18677 1.03677 1.31482 1.28825 1.07015 0.96289 1.03378 1.85508 1.55854 1.02867 1.01676 0.92367 0.94573 0.94754 0.82789 0.83491 0.85440 0.81763 0.79850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.46 13.29 55.43 0.74 -22.72 15 2 C 0.07 1.83 5.46 -17.82 -0.10 1.74 15 3 Si 0.88 19.51 29.54 -169.99 -5.02 14.49 15 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 15 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 7 C -0.50 -12.40 6.51 -34.44 -0.22 -12.63 15 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 15 9 C 0.05 1.08 4.41 -29.04 -0.13 0.95 15 10 C -0.07 -1.51 5.12 -104.09 -0.53 -2.05 15 11 C 0.09 1.78 10.83 -17.62 -0.19 1.59 15 12 N -0.49 -8.86 10.35 -13.37 -0.14 -9.00 15 13 C 0.07 1.07 11.17 -17.62 -0.20 0.88 15 14 C -0.16 -2.48 9.83 -39.05 -0.38 -2.86 15 15 C 0.02 0.29 5.82 -104.66 -0.61 -0.32 15 16 C -0.19 -3.66 5.13 -36.79 -0.19 -3.84 15 17 C 0.03 0.56 11.23 -18.86 -0.21 0.35 15 18 N -0.49 -8.91 10.52 -15.47 -0.16 -9.07 15 19 C -0.06 -1.07 12.22 51.64 0.63 -0.44 15 20 S 0.28 5.30 19.56 -107.50 -2.10 3.20 15 21 H 0.27 6.79 8.31 -40.82 -0.34 6.45 15 22 H 0.04 0.89 8.06 -51.93 -0.42 0.47 15 23 H 0.03 0.87 6.95 -51.93 -0.36 0.51 15 24 H 0.15 2.77 8.06 -52.49 -0.42 2.34 15 25 H 0.15 1.78 8.06 -52.49 -0.42 1.36 15 26 H 0.13 1.68 8.06 -52.49 -0.42 1.26 15 27 H 0.17 2.50 8.06 -52.48 -0.42 2.08 15 28 H 0.18 2.52 8.06 -52.49 -0.42 2.10 15 LS Contribution 263.64 15.07 3.97 3.97 Total: -1.00 -27.69 263.64 -7.28 -34.97 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -2.43 Total: 0.79 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -2.13 Total: -16.64 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.44 Total: -40.79 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -2.10 Total: 3.20 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.69 -7.28 -34.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936098.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.336 kcal (2) G-P(sol) polarization free energy of solvation -27.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds