Wall clock time and date at job start Mon Mar 30 2020 05:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00079 * 2 1 4 4 H 1.48502 * 109.47262 * 270.00082 * 3 2 1 5 5 H 1.48501 * 109.47066 * 30.00076 * 3 2 1 6 6 H 1.48497 * 109.47307 * 150.00316 * 3 2 1 7 7 C 1.37879 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00145 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47019 * 180.02562 * 9 7 2 11 11 C 1.37888 * 120.50558 * 265.02174 * 10 9 7 12 12 N 1.31970 * 120.90488 * 179.97438 * 11 10 9 13 13 C 1.32001 * 122.05987 * 0.02716 * 12 11 10 14 14 C 1.37849 * 120.90224 * 359.73753 * 13 12 11 15 15 C 1.40007 * 120.50613 * 85.00359 * 10 9 7 16 16 C 1.47775 * 120.92680 * 359.97438 * 15 10 9 17 17 C 1.35114 * 126.10523 * 129.99772 * 16 15 10 18 18 N 1.31365 * 114.22619 * 179.74187 * 17 16 15 19 19 C 1.29173 * 117.29558 * 359.97438 * 18 17 16 20 20 S 1.70951 * 110.36546 * 0.02562 * 19 18 17 21 21 H 0.96998 * 120.00025 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.46835 * 60.00469 * 9 7 2 23 23 H 1.08995 * 109.47382 * 300.00522 * 9 7 2 24 24 H 1.07999 * 119.54647 * 359.97438 * 11 10 9 25 25 H 1.07996 * 119.54620 * 179.97438 * 13 12 11 26 26 H 1.07993 * 120.49967 * 180.26963 * 14 13 12 27 27 H 1.08004 * 122.88642 * 359.77847 * 17 16 15 28 28 H 1.08000 * 124.81920 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6068 -4.2436 -1.1841 12 7 3.4641 -5.2468 -1.1933 13 6 3.9980 -5.7225 -0.0837 14 6 3.6813 -5.1801 1.1434 15 6 2.7720 -4.1165 1.2011 16 6 2.3991 -3.5056 2.4940 17 6 1.9874 -4.1670 3.5979 18 7 1.7204 -3.3906 4.6233 19 6 1.8791 -2.1190 4.4607 20 16 2.4196 -1.7851 2.8737 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.1944 -3.8868 -2.1163 25 1 4.6953 -6.5453 -0.1384 26 1 4.1252 -5.5715 2.0467 27 1 1.8870 -5.2418 3.6342 28 1 1.6954 -1.3727 5.2194 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259936098.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:58 Heat of formation + Delta-G solvation = 53.246005 kcal Electronic energy + Delta-G solvation = -15002.249953 eV Core-core repulsion = 12529.965686 eV Total energy + Delta-G solvation = -2472.284267 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.16897 -40.10661 -35.91926 -34.36378 -33.01872 -30.32249 -29.11271 -26.55106 -25.49861 -24.02958 -22.43284 -20.85850 -19.27493 -18.49990 -17.54901 -17.19978 -16.69645 -15.78226 -15.72715 -15.14906 -14.82352 -14.68053 -14.35870 -14.07207 -13.95668 -13.42286 -13.13338 -12.66611 -12.51678 -12.26178 -11.75810 -11.64621 -10.92898 -10.63604 -10.44665 -10.28769 -9.83146 -9.77335 -9.50876 -8.19970 -6.27963 -0.45166 0.30815 0.37198 0.80841 1.14536 1.40880 1.43721 1.51606 1.96785 2.39527 2.97833 3.15824 3.49924 3.64440 3.75063 4.05153 4.16727 4.27063 4.44516 4.60342 4.71004 4.95537 5.04399 5.22851 5.31240 5.34027 5.68637 5.72702 5.84705 6.12857 6.77724 6.82572 7.09299 7.36266 8.89262 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.017918 B = 0.011524 C = 0.007849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.332866 B = 2429.047225 C = 3566.384372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.033 3.967 3 Si 0.932 3.068 4 H -0.276 1.276 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.502 4.502 8 H 0.053 0.947 9 C 0.061 3.939 10 C -0.103 4.103 11 C 0.084 3.916 12 N -0.499 5.499 13 C 0.079 3.921 14 C -0.144 4.144 15 C 0.007 3.993 16 C -0.205 4.205 17 C 0.037 3.963 18 N -0.499 5.499 19 C -0.038 4.038 20 S 0.225 5.775 21 H 0.266 0.734 22 H 0.009 0.991 23 H 0.009 0.991 24 H 0.153 0.847 25 H 0.193 0.807 26 H 0.164 0.836 27 H 0.192 0.808 28 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.777 -6.026 5.422 10.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.168 4.168 3 Si 0.757 3.243 4 H -0.202 1.202 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.543 4.543 8 H 0.072 0.928 9 C 0.024 3.976 10 C -0.106 4.106 11 C -0.071 4.071 12 N -0.208 5.208 13 C -0.077 4.077 14 C -0.165 4.165 15 C -0.003 4.003 16 C -0.327 4.327 17 C -0.118 4.118 18 N -0.213 5.213 19 C -0.331 4.331 20 S 0.486 5.514 21 H 0.075 0.925 22 H 0.027 0.973 23 H 0.028 0.972 24 H 0.171 0.829 25 H 0.209 0.791 26 H 0.181 0.819 27 H 0.209 0.791 28 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 6.909 -5.456 4.736 9.997 hybrid contribution -0.518 0.637 0.591 1.012 sum 6.391 -4.820 5.328 9.615 Atomic orbital electron populations 1.70039 1.07469 1.27920 1.49983 1.25544 0.95233 1.01790 0.94206 0.85919 0.79615 0.80020 0.78740 1.20165 1.20392 1.18162 1.21002 0.92563 0.90245 1.50442 0.92843 1.18082 0.92529 0.90466 0.96571 1.21578 0.98287 0.97219 0.93544 1.22537 0.94768 0.92386 0.97438 1.67657 1.08983 1.11421 1.32738 1.23147 0.98259 0.99471 0.86854 1.22441 0.97271 0.95786 1.01038 1.18315 0.96779 0.95667 0.89556 1.24408 1.12872 0.96752 0.98718 1.22224 1.01139 1.01816 0.86633 1.66273 1.19289 1.04062 1.31701 1.29242 1.04786 0.96610 1.02504 1.85575 1.57349 1.04579 1.03890 0.92463 0.97259 0.97243 0.82942 0.79053 0.81888 0.79148 0.76497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.58 13.29 21.45 0.28 -50.29 15 2 C 0.03 1.71 5.46 84.66 0.46 2.18 15 3 Si 0.93 40.34 29.54 68.60 2.03 42.36 15 4 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 15 6 H -0.26 -10.62 7.11 99.48 0.71 -9.92 15 7 C -0.50 -25.43 6.51 25.60 0.17 -25.26 15 8 H 0.05 2.72 7.74 -2.91 -0.02 2.70 15 9 C 0.06 3.01 4.41 29.10 0.13 3.14 15 10 C -0.10 -4.30 5.12 -19.52 -0.10 -4.40 15 11 C 0.08 3.25 10.83 84.59 0.92 4.16 15 12 N -0.50 -17.19 10.35 -196.22 -2.03 -19.22 15 13 C 0.08 2.20 11.17 84.58 0.94 3.15 15 14 C -0.14 -4.10 9.83 22.62 0.22 -3.88 15 15 C 0.01 0.26 5.82 -19.89 -0.12 0.15 15 16 C -0.21 -7.52 5.13 24.07 0.12 -7.40 15 17 C 0.04 1.24 11.23 84.04 0.94 2.19 15 18 N -0.50 -17.12 10.52 -202.86 -2.13 -19.26 15 19 C -0.04 -1.23 12.22 130.63 1.60 0.36 15 20 S 0.22 8.49 19.56 -56.49 -1.11 7.38 15 21 H 0.27 13.97 8.31 -92.71 -0.77 13.20 15 22 H 0.01 0.48 8.06 -2.39 -0.02 0.46 15 23 H 0.01 0.50 6.95 -2.39 -0.02 0.48 15 24 H 0.15 5.69 8.06 -2.91 -0.02 5.67 15 25 H 0.19 3.58 8.06 -2.91 -0.02 3.55 15 26 H 0.16 3.48 8.06 -2.91 -0.02 3.46 15 27 H 0.19 5.16 8.06 -2.91 -0.02 5.14 15 28 H 0.22 5.34 8.06 -2.91 -0.02 5.32 15 Total: -1.00 -60.34 263.64 3.50 -56.84 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 1.17 Total: 7.80 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 5.29 Total: -25.61 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -3.88 Total: -88.77 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.36 kcal Atomic # 16 Polarization: 8.49 SS G_CDS: -1.11 Total: 7.38 kcal Total: -60.34 3.50 -56.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936098.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.085 kcal (2) G-P(sol) polarization free energy of solvation -60.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds