Wall clock time and date at job start Mon Mar 30 2020 06:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37942 * 120.16956 * 2 1 4 4 C 1.38608 * 120.15658 * 180.02562 * 3 2 1 5 5 C 1.37888 * 120.67801 * 359.77418 * 4 3 2 6 6 C 1.39094 * 120.04316 * 0.02562 * 5 4 3 7 7 O 1.34899 * 132.39504 * 179.97438 * 6 5 4 8 8 C 1.34559 * 111.60418 * 180.02562 * 7 6 5 9 9 C 1.46378 * 125.56162 * 179.97438 * 8 7 6 10 10 O 1.21649 * 120.00410 * 173.49917 * 9 8 7 11 11 O 1.34994 * 119.99827 * 353.49636 * 9 8 7 12 12 C 1.40579 * 108.87680 * 0.02562 * 8 7 6 13 13 C 1.40004 * 127.40148 * 180.02562 * 12 8 7 14 14 H 1.08004 * 120.00026 * 133.51210 * 13 12 8 15 15 C 1.40604 * 119.99890 * 313.50461 * 13 12 8 16 16 N 1.30469 * 120.00096 * 343.10181 * 15 13 12 17 17 Si 1.86801 * 119.99876 * 163.10633 * 15 13 12 18 18 H 1.48501 * 109.47158 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47456 * 120.00275 * 17 15 13 20 20 H 1.48500 * 109.46991 * 239.99977 * 17 15 13 21 21 C 1.39104 * 120.16615 * 179.57942 * 2 1 3 22 22 H 1.08998 * 109.46772 * 264.98519 * 1 2 3 23 23 H 1.08995 * 109.47068 * 24.98227 * 1 2 3 24 24 H 1.08997 * 109.47185 * 144.98596 * 1 2 3 25 25 H 1.07997 * 119.91854 * 359.77553 * 3 2 1 26 26 H 1.08002 * 119.66549 * 179.80432 * 4 3 2 27 27 H 1.08002 * 119.98372 * 179.97438 * 5 4 3 28 28 H 0.96705 * 113.99713 * 179.97438 * 11 9 8 29 29 H 0.97004 * 119.99867 * 175.36157 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1926 0.0000 4 6 3.5863 1.1922 -0.0005 5 6 4.2896 0.0062 0.0036 6 6 3.6090 -1.2069 0.0078 7 8 4.0329 -2.4875 0.0119 8 6 3.0009 -3.3510 0.0145 9 6 3.1121 -4.8105 0.0186 10 8 2.1146 -5.4962 0.1400 11 8 4.3215 -5.3957 -0.1125 12 6 1.7985 -2.6226 0.0116 13 6 0.4949 -3.1333 0.0135 14 1 -0.2429 -2.7280 0.6902 15 6 0.1462 -4.1736 -0.8658 16 7 0.9050 -4.4419 -1.8926 17 14 -1.4037 -5.1717 -0.5637 18 1 -2.0838 -4.6722 0.6583 19 1 -2.3149 -5.0358 -1.7285 20 1 -1.0443 -6.6008 -0.3805 21 6 2.2060 -1.2026 0.0088 22 1 -0.3633 -0.0898 1.0237 23 1 -0.3633 0.9315 -0.4340 24 1 -0.3633 -0.8416 -0.5896 25 1 1.6617 2.1287 -0.0037 26 1 4.1211 2.1306 -0.0037 27 1 5.3695 0.0190 0.0027 28 1 4.2944 -6.3622 -0.0980 29 1 0.7017 -5.2014 -2.4607 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259942440.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:07 Heat of formation + Delta-G solvation = -78.235394 kcal Electronic energy + Delta-G solvation = -17658.027795 eV Core-core repulsion = 14704.996445 eV Total energy + Delta-G solvation = -2953.031350 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.84493 -38.48022 -37.04985 -35.01414 -33.85180 -32.17232 -30.41264 -28.78702 -26.56366 -25.68819 -23.07630 -21.49153 -20.18289 -19.69762 -17.33386 -17.04202 -16.13774 -15.46983 -15.28266 -14.92017 -14.61006 -13.82542 -13.73484 -13.13707 -12.79228 -12.62622 -12.52311 -12.11815 -11.74009 -11.44359 -11.31077 -10.95958 -10.91479 -10.74356 -10.34945 -10.23642 -10.11849 -9.58322 -8.89132 -8.51505 -7.70198 -7.07374 -6.82015 -4.60704 1.64492 2.16586 2.87458 3.13580 3.15235 3.23957 3.87733 3.97140 4.36786 4.47837 4.62100 5.02128 5.43820 5.51472 5.77333 5.89347 6.04350 6.18136 6.29748 6.29980 6.56176 6.79485 6.84059 6.98386 7.07772 7.10704 7.32388 7.38455 7.56522 7.63638 8.11099 8.27950 8.62850 8.64866 9.34738 10.09459 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.010852 C = 0.007616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.132234 B = 2579.607962 C = 3675.596697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.013 4.013 3 C -0.182 4.182 4 C -0.089 4.089 5 C -0.152 4.152 6 C 0.094 3.906 7 O -0.198 6.198 8 C -0.204 4.204 9 C 0.560 3.440 10 O -0.514 6.514 11 O -0.526 6.526 12 C 0.132 3.868 13 C -0.421 4.421 14 H 0.093 0.907 15 C 0.106 3.894 16 N -0.759 5.759 17 Si 0.917 3.083 18 H -0.260 1.260 19 H -0.278 1.278 20 H -0.267 1.267 21 C -0.156 4.156 22 H 0.066 0.934 23 H 0.054 0.946 24 H 0.086 0.914 25 H 0.116 0.884 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.388 0.612 29 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.365 4.785 1.525 5.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.014 4.014 3 C -0.201 4.201 4 C -0.107 4.107 5 C -0.171 4.171 6 C 0.044 3.956 7 O -0.102 6.102 8 C -0.250 4.250 9 C 0.411 3.589 10 O -0.406 6.406 11 O -0.336 6.336 12 C 0.128 3.872 13 C -0.448 4.448 14 H 0.110 0.890 15 C -0.118 4.118 16 N -0.383 5.383 17 Si 0.740 3.260 18 H -0.183 1.183 19 H -0.203 1.203 20 H -0.192 1.192 21 C -0.157 4.157 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.104 0.896 25 H 0.134 0.866 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.242 0.758 29 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.385 4.846 1.314 5.036 hybrid contribution -0.463 -1.140 -0.092 1.234 sum -0.077 3.706 1.222 3.903 Atomic orbital electron populations 1.20844 0.91432 1.02586 1.02313 1.19308 0.95773 0.90905 0.95375 1.20653 0.93925 0.96706 1.08775 1.20615 0.94020 0.96227 0.99820 1.19740 0.99127 0.88374 1.09880 1.19664 0.92858 0.84802 0.98271 1.83676 1.35164 1.12511 1.78868 1.20236 0.84558 0.85732 1.34503 1.18527 0.79918 0.85800 0.74638 1.90791 1.37363 1.62917 1.49532 1.85133 1.35213 1.25752 1.87506 1.18429 0.92539 0.86494 0.89782 1.18878 0.94595 1.14905 1.16385 0.88958 1.25724 0.98652 0.95087 0.92299 1.69502 1.36439 1.22549 1.09790 0.86136 0.80074 0.80643 0.79097 1.18337 1.20332 1.19184 1.20221 0.93048 0.94804 1.07671 0.91569 0.92749 0.89565 0.86623 0.86169 0.86405 0.75811 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.03 9.44 36.00 0.34 -1.69 15 2 C -0.01 -0.27 5.90 -104.41 -0.62 -0.89 15 3 C -0.18 -3.16 9.68 -39.55 -0.38 -3.54 15 4 C -0.09 -1.48 10.01 -39.57 -0.40 -1.87 15 5 C -0.15 -2.93 10.07 -39.39 -0.40 -3.32 15 6 C 0.09 2.23 7.35 -38.49 -0.28 1.95 15 7 O -0.20 -5.19 10.54 2.82 0.03 -5.16 15 8 C -0.20 -5.58 6.95 -35.43 -0.25 -5.82 15 9 C 0.56 14.54 7.59 34.01 0.26 14.80 15 10 O -0.51 -13.87 13.86 -19.38 -0.27 -14.14 15 11 O -0.53 -11.55 13.56 -42.99 -0.58 -12.14 15 12 C 0.13 3.53 5.55 -104.47 -0.58 2.95 15 13 C -0.42 -10.91 7.11 -38.03 -0.27 -11.18 15 14 H 0.09 2.24 7.63 -52.48 -0.40 1.84 15 15 C 0.11 2.70 3.34 -17.24 -0.06 2.64 15 16 N -0.76 -20.12 11.34 55.58 0.63 -19.49 15 17 Si 0.92 19.53 29.60 -169.99 -5.03 14.50 15 18 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 19 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 20 H -0.27 -5.87 7.11 56.52 0.40 -5.46 15 21 C -0.16 -3.77 6.15 -104.92 -0.65 -4.41 15 22 H 0.07 1.09 8.14 -51.93 -0.42 0.66 15 23 H 0.05 0.79 8.05 -51.93 -0.42 0.37 15 24 H 0.09 1.69 6.61 -51.93 -0.34 1.34 15 25 H 0.12 1.64 8.06 -52.49 -0.42 1.21 15 26 H 0.12 1.54 8.06 -52.49 -0.42 1.12 15 27 H 0.12 1.96 8.06 -52.49 -0.42 1.53 15 28 H 0.39 6.34 8.98 45.56 0.41 6.75 15 29 H 0.29 7.03 8.29 -40.82 -0.34 6.70 15 LS Contribution 261.25 15.07 3.94 3.94 Total: -1.00 -30.88 261.25 -6.14 -37.02 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -1.58 Total: 5.87 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -3.28 Total: -10.40 kcal Atomic # 7 Polarization: -20.12 SS G_CDS: 0.63 Total: -19.49 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.82 Total: -31.44 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.88 -6.14 -37.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259942440.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.214 kcal (2) G-P(sol) polarization free energy of solvation -30.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds