Wall clock time and date at job start Mon Mar 30 2020 06:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37942 * 120.16956 * 2 1 4 4 C 1.38608 * 120.15658 * 180.02562 * 3 2 1 5 5 C 1.37888 * 120.67801 * 359.77418 * 4 3 2 6 6 C 1.39094 * 120.04316 * 0.02562 * 5 4 3 7 7 O 1.34899 * 132.39504 * 179.97438 * 6 5 4 8 8 C 1.34559 * 111.60418 * 180.02562 * 7 6 5 9 9 C 1.46378 * 125.56162 * 179.97438 * 8 7 6 10 10 O 1.21649 * 120.00410 * 173.49917 * 9 8 7 11 11 O 1.34994 * 119.99827 * 353.49636 * 9 8 7 12 12 C 1.40579 * 108.87680 * 0.02562 * 8 7 6 13 13 C 1.40004 * 127.40148 * 180.02562 * 12 8 7 14 14 H 1.08004 * 120.00026 * 133.51210 * 13 12 8 15 15 C 1.40604 * 119.99890 * 313.50461 * 13 12 8 16 16 N 1.30469 * 120.00096 * 343.10181 * 15 13 12 17 17 Si 1.86801 * 119.99876 * 163.10633 * 15 13 12 18 18 H 1.48501 * 109.47158 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47456 * 120.00275 * 17 15 13 20 20 H 1.48500 * 109.46991 * 239.99977 * 17 15 13 21 21 C 1.39104 * 120.16615 * 179.57942 * 2 1 3 22 22 H 1.08998 * 109.46772 * 264.98519 * 1 2 3 23 23 H 1.08995 * 109.47068 * 24.98227 * 1 2 3 24 24 H 1.08997 * 109.47185 * 144.98596 * 1 2 3 25 25 H 1.07997 * 119.91854 * 359.77553 * 3 2 1 26 26 H 1.08002 * 119.66549 * 179.80432 * 4 3 2 27 27 H 1.08002 * 119.98372 * 179.97438 * 5 4 3 28 28 H 0.96705 * 113.99713 * 179.97438 * 11 9 8 29 29 H 0.97004 * 119.99867 * 175.36157 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1926 0.0000 4 6 3.5863 1.1922 -0.0005 5 6 4.2896 0.0062 0.0036 6 6 3.6090 -1.2069 0.0078 7 8 4.0329 -2.4875 0.0119 8 6 3.0009 -3.3510 0.0145 9 6 3.1121 -4.8105 0.0186 10 8 2.1146 -5.4962 0.1400 11 8 4.3215 -5.3957 -0.1125 12 6 1.7985 -2.6226 0.0116 13 6 0.4949 -3.1333 0.0135 14 1 -0.2429 -2.7280 0.6902 15 6 0.1462 -4.1736 -0.8658 16 7 0.9050 -4.4419 -1.8926 17 14 -1.4037 -5.1717 -0.5637 18 1 -2.0838 -4.6722 0.6583 19 1 -2.3149 -5.0358 -1.7285 20 1 -1.0443 -6.6008 -0.3805 21 6 2.2060 -1.2026 0.0088 22 1 -0.3633 -0.0898 1.0237 23 1 -0.3633 0.9315 -0.4340 24 1 -0.3633 -0.8416 -0.5896 25 1 1.6617 2.1287 -0.0037 26 1 4.1211 2.1306 -0.0037 27 1 5.3695 0.0190 0.0027 28 1 4.2944 -6.3622 -0.0980 29 1 0.7017 -5.2014 -2.4607 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259942440.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:06 Heat of formation + Delta-G solvation = -98.368972 kcal Electronic energy + Delta-G solvation = -17658.900853 eV Core-core repulsion = 14704.996445 eV Total energy + Delta-G solvation = -2953.904407 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.59278 -40.37368 -38.62865 -36.89003 -35.73833 -33.77493 -32.13389 -30.46125 -28.27755 -27.38480 -24.82869 -23.11939 -21.88212 -21.52060 -19.14808 -18.81833 -18.00849 -17.29665 -16.95587 -16.71810 -16.18704 -15.68255 -15.34901 -14.69829 -14.38515 -14.25035 -14.18125 -13.93591 -13.39156 -13.09698 -12.88632 -12.64673 -12.43339 -12.29134 -12.21367 -11.98665 -11.70931 -11.45067 -10.78367 -10.24851 -9.30925 -8.91873 -8.64097 -6.56935 -0.01903 0.60182 1.12313 1.38158 1.47917 1.53326 2.12586 2.20468 2.43391 2.86467 2.91160 3.15175 3.95548 4.19265 4.24101 4.46923 4.53493 4.73243 4.89744 4.92273 4.99458 5.03963 5.23161 5.34541 5.49613 5.56513 5.62680 5.78016 5.84736 6.06594 6.20841 6.44367 6.69125 6.79878 7.47048 8.22323 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.022092 B = 0.010852 C = 0.007616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.132234 B = 2579.607962 C = 3675.596697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.031 4.031 3 C -0.167 4.167 4 C -0.068 4.068 5 C -0.159 4.159 6 C 0.061 3.939 7 O -0.222 6.222 8 C -0.246 4.246 9 C 0.555 3.445 10 O -0.536 6.536 11 O -0.521 6.521 12 C 0.113 3.887 13 C -0.441 4.441 14 H 0.099 0.901 15 C 0.070 3.930 16 N -0.794 5.794 17 Si 0.977 3.023 18 H -0.248 1.248 19 H -0.259 1.259 20 H -0.278 1.278 21 C -0.194 4.194 22 H 0.074 0.926 23 H 0.090 0.910 24 H 0.058 0.942 25 H 0.162 0.838 26 H 0.174 0.826 27 H 0.142 0.858 28 H 0.411 0.589 29 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.205 7.513 1.722 7.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.031 4.031 3 C -0.185 4.185 4 C -0.085 4.085 5 C -0.178 4.178 6 C 0.012 3.988 7 O -0.128 6.128 8 C -0.292 4.292 9 C 0.407 3.593 10 O -0.430 6.430 11 O -0.333 6.333 12 C 0.108 3.892 13 C -0.467 4.467 14 H 0.117 0.883 15 C -0.150 4.150 16 N -0.419 5.419 17 Si 0.797 3.203 18 H -0.171 1.171 19 H -0.183 1.183 20 H -0.204 1.204 21 C -0.195 4.195 22 H 0.093 0.907 23 H 0.109 0.891 24 H 0.077 0.923 25 H 0.179 0.821 26 H 0.192 0.808 27 H 0.160 0.840 28 H 0.268 0.732 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.167 7.588 1.511 7.739 hybrid contribution -0.184 -1.769 -0.144 1.785 sum -0.351 5.819 1.367 5.988 Atomic orbital electron populations 1.20836 0.89921 1.03316 1.02679 1.19778 0.97255 0.90711 0.95378 1.21232 0.94543 0.97131 1.05583 1.21286 0.94086 0.97153 0.96017 1.20271 1.00685 0.87507 1.09315 1.20398 0.93627 0.85059 0.99714 1.83597 1.35175 1.13688 1.80353 1.20617 0.85476 0.86654 1.36440 1.18582 0.80440 0.85831 0.74427 1.90739 1.38113 1.63343 1.50840 1.85066 1.33416 1.27870 1.86968 1.18924 0.92814 0.88368 0.89058 1.19140 0.94700 1.15912 1.16939 0.88307 1.26548 1.01383 0.95481 0.91624 1.69563 1.38363 1.23194 1.10770 0.85250 0.76861 0.78130 0.80040 1.17081 1.18320 1.20399 1.20492 0.93868 0.94990 1.10195 0.90700 0.89094 0.92301 0.82096 0.80833 0.84032 0.73168 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.72 9.44 71.24 0.67 -3.04 15 2 C -0.03 -1.20 5.90 -19.73 -0.12 -1.32 15 3 C -0.17 -5.01 9.68 22.29 0.22 -4.79 15 4 C -0.07 -1.93 10.01 22.28 0.22 -1.70 15 5 C -0.16 -5.76 10.07 22.39 0.23 -5.53 15 6 C 0.06 2.91 7.35 22.98 0.17 3.08 15 7 O -0.22 -12.17 10.54 -10.42 -0.11 -12.28 15 8 C -0.25 -14.12 6.95 24.96 0.17 -13.95 15 9 C 0.55 30.13 7.59 69.94 0.53 30.66 15 10 O -0.54 -30.10 13.86 19.35 0.27 -29.83 15 11 O -0.52 -23.62 13.56 -57.51 -0.78 -24.40 15 12 C 0.11 6.29 5.55 -19.77 -0.11 6.18 15 13 C -0.44 -23.59 7.11 23.28 0.17 -23.43 15 14 H 0.10 4.94 7.63 -2.91 -0.02 4.91 15 15 C 0.07 3.64 3.34 85.47 0.29 3.93 15 16 N -0.79 -43.61 11.34 21.94 0.25 -43.36 15 17 Si 0.98 40.49 29.60 68.60 2.03 42.52 15 18 H -0.25 -9.67 7.11 99.48 0.71 -8.96 15 19 H -0.26 -9.83 7.11 99.48 0.71 -9.12 15 20 H -0.28 -11.99 7.11 99.48 0.71 -11.29 15 21 C -0.19 -9.52 6.15 -20.06 -0.12 -9.64 15 22 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 23 H 0.09 2.31 8.05 -2.39 -0.02 2.29 15 24 H 0.06 2.29 6.61 -2.39 -0.02 2.28 15 25 H 0.16 3.42 8.06 -2.91 -0.02 3.39 15 26 H 0.17 3.15 8.06 -2.91 -0.02 3.13 15 27 H 0.14 4.33 8.06 -2.91 -0.02 4.31 15 28 H 0.41 13.70 8.98 -74.05 -0.67 13.04 15 29 H 0.29 14.72 8.29 -92.71 -0.77 13.95 15 Total: -1.00 -71.17 261.25 4.51 -66.67 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.54 Total: 20.25 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 2.31 Total: -19.56 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.25 Total: -43.36 kcal Atomic # 8 Polarization: -65.89 SS G_CDS: -0.62 Total: -66.51 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -71.17 4.51 -66.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259942440.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.703 kcal (2) G-P(sol) polarization free energy of solvation -71.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds