Wall clock time and date at job start Mon Mar 30 2020 05:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99901 * 2 1 4 4 H 1.48498 * 109.47375 * 270.00259 * 3 2 1 5 5 H 1.48499 * 109.46865 * 30.00692 * 3 2 1 6 6 H 1.48497 * 109.46810 * 150.00001 * 3 2 1 7 7 C 1.37878 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00174 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99740 * 179.97438 * 7 2 1 10 10 C 1.50697 * 109.46805 * 179.97438 * 9 7 2 11 11 C 1.38718 * 120.68786 * 90.00785 * 10 9 7 12 12 N 1.32155 * 119.22744 * 179.97438 * 11 10 9 13 13 C 1.32869 * 120.71435 * 359.97438 * 12 11 10 14 14 C 1.47530 * 119.25380 * 180.02562 * 13 12 11 15 15 C 1.34965 * 125.27767 * 180.02562 * 14 13 12 16 16 C 1.37733 * 114.72325 * 180.24951 * 15 14 13 17 17 C 1.33791 * 115.07952 * 359.49375 * 16 15 14 18 18 S 1.75862 * 109.74693 * 0.47630 * 17 16 15 19 19 N 1.32866 * 121.49360 * 0.27850 * 13 12 11 20 20 C 1.32157 * 120.70919 * 359.44079 * 19 13 12 21 21 H 0.97000 * 119.99814 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47006 * 60.00014 * 9 7 2 23 23 H 1.08999 * 109.47008 * 300.00201 * 9 7 2 24 24 H 1.07995 * 120.38317 * 359.97438 * 11 10 9 25 25 H 1.08002 * 122.63526 * 359.97438 * 15 14 13 26 26 H 1.07997 * 122.45999 * 179.72814 * 16 15 14 27 27 H 1.07990 * 125.12342 * 180.19452 * 17 16 15 28 28 H 1.08006 * 120.38458 * 180.26804 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1941 -0.0011 10 6 4.0138 -2.6149 -0.0010 11 6 4.2495 -3.2826 -1.1939 12 7 4.6903 -4.5280 -1.1601 13 6 4.9080 -5.1396 -0.0008 14 6 5.4008 -6.5302 -0.0007 15 6 5.6614 -7.2647 1.1012 16 6 6.1188 -8.5391 0.8490 17 6 6.2246 -8.8578 -0.4461 18 16 5.7391 -7.4881 -1.4366 19 7 4.6872 -4.5289 1.1584 20 6 4.2516 -3.2817 1.1919 21 1 -0.4850 0.8401 -0.0004 22 1 3.8752 -0.6804 0.8889 23 1 3.8745 -0.6800 -0.8911 24 1 4.0748 -2.7903 -2.1391 25 1 5.5264 -6.8816 2.1019 26 1 6.3697 -9.2318 1.6387 27 1 6.5621 -9.8107 -0.8259 28 1 4.0779 -2.7889 2.1372 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259944713.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:40 Heat of formation + Delta-G solvation = 55.736917 kcal Electronic energy + Delta-G solvation = -14213.397092 eV Core-core repulsion = 11741.220840 eV Total energy + Delta-G solvation = -2472.176252 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.93815 -38.62422 -35.94766 -34.71010 -34.08421 -31.41725 -28.96663 -26.19671 -25.52367 -24.38910 -22.71194 -20.32062 -19.33535 -19.01791 -18.23616 -16.93578 -16.52347 -16.05515 -15.95755 -15.35939 -14.51174 -14.41978 -14.18892 -13.90521 -13.73007 -13.51262 -13.24222 -13.09017 -12.48421 -12.12754 -11.84973 -11.76408 -11.69959 -11.55186 -10.81317 -10.63417 -10.25915 -9.44831 -9.26108 -8.31123 -6.38911 -0.68747 0.08973 0.50335 0.57051 1.10067 1.41043 1.42594 1.53716 1.81880 2.35695 2.78161 2.86944 3.03742 3.24132 3.75949 4.01962 4.07874 4.21848 4.34823 4.53285 4.69729 4.86361 4.99758 5.15703 5.26421 5.35280 5.42314 5.50668 5.53614 5.94297 6.20382 6.67063 6.98279 7.25409 8.85237 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.057210 B = 0.004580 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.306154 B = 6112.565502 C = 6219.364069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.237 1.237 7 C -0.526 4.526 8 H 0.023 0.977 9 C 0.033 3.967 10 C -0.150 4.150 11 C 0.142 3.858 12 N -0.526 5.526 13 C 0.341 3.659 14 C -0.180 4.180 15 C -0.085 4.085 16 C -0.148 4.148 17 C -0.194 4.194 18 S 0.154 5.846 19 N -0.515 5.515 20 C 0.142 3.858 21 H 0.268 0.732 22 H 0.049 0.951 23 H 0.046 0.954 24 H 0.184 0.816 25 H 0.148 0.852 26 H 0.176 0.824 27 H 0.204 0.796 28 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.951 -13.423 0.000 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.160 1.160 7 C -0.564 4.564 8 H 0.041 0.959 9 C -0.006 4.006 10 C -0.154 4.154 11 C -0.024 4.024 12 N -0.240 5.240 13 C 0.076 3.924 14 C -0.298 4.298 15 C -0.120 4.120 16 C -0.177 4.177 17 C -0.331 4.331 18 S 0.419 5.581 19 N -0.229 5.229 20 C -0.024 4.024 21 H 0.077 0.923 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.201 0.799 25 H 0.166 0.834 26 H 0.193 0.807 27 H 0.221 0.779 28 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 15.030 -13.990 -1.591 20.595 hybrid contribution -0.804 1.609 1.474 2.325 sum 14.227 -12.381 -0.117 18.860 Atomic orbital electron populations 1.70062 1.08554 1.28469 1.51691 1.25994 0.95554 1.03541 0.93625 0.85617 0.79685 0.77686 0.79445 1.18957 1.21290 1.16041 1.21059 0.90548 0.92908 1.51843 0.95868 1.18548 0.94114 0.88566 0.99332 1.21989 0.97595 1.00616 0.95245 1.23375 0.90546 0.88933 0.99549 1.68414 1.15038 1.10976 1.29596 1.20545 0.94022 0.93265 0.84586 1.22242 1.13913 0.94594 0.99098 1.20681 0.97991 0.94135 0.99152 1.20342 1.03428 0.96224 0.97725 1.26481 1.06400 1.03481 0.96724 1.84385 1.62352 1.03923 1.07471 1.68368 1.14590 1.10588 1.29398 1.23425 0.90503 0.88928 0.99516 0.92261 0.93314 0.93546 0.79859 0.83405 0.80698 0.77915 0.79654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.70 13.96 21.45 0.30 -57.40 15 2 C 0.01 0.58 5.47 84.65 0.46 1.05 15 3 Si 0.95 41.09 27.47 68.60 1.88 42.98 15 4 H -0.26 -10.95 7.11 99.48 0.71 -10.25 15 5 H -0.29 -12.39 7.11 99.48 0.71 -11.68 15 6 H -0.24 -9.15 6.54 99.48 0.65 -8.50 15 7 C -0.53 -28.76 9.65 25.60 0.25 -28.51 15 8 H 0.02 1.45 7.98 -2.91 -0.02 1.43 15 9 C 0.03 1.41 4.22 29.10 0.12 1.53 15 10 C -0.15 -5.98 5.11 -19.64 -0.10 -6.08 15 11 C 0.14 5.38 11.00 84.76 0.93 6.31 15 12 N -0.53 -20.11 10.13 -189.55 -1.92 -22.03 15 13 C 0.34 12.73 7.58 137.14 1.04 13.77 15 14 C -0.18 -5.56 6.42 23.97 0.15 -5.41 15 15 C -0.08 -2.16 9.81 21.40 0.21 -1.95 15 16 C -0.15 -2.70 10.16 21.14 0.21 -2.48 15 17 C -0.19 -3.29 11.23 66.81 0.75 -2.54 15 18 S 0.15 3.78 23.06 -56.49 -1.30 2.48 15 19 N -0.52 -19.38 9.97 -189.54 -1.89 -21.27 15 20 C 0.14 5.34 11.00 84.76 0.93 6.27 15 21 H 0.27 15.21 8.31 -92.71 -0.77 14.44 15 22 H 0.05 1.97 7.16 -2.39 -0.02 1.95 15 23 H 0.05 1.86 7.53 -2.39 -0.02 1.84 15 24 H 0.18 6.14 8.06 -2.91 -0.02 6.11 15 25 H 0.15 3.72 7.95 -2.91 -0.02 3.70 15 26 H 0.18 2.00 8.06 -2.91 -0.02 1.98 15 27 H 0.20 1.86 8.06 -2.92 -0.02 1.83 15 28 H 0.19 6.08 8.06 -2.91 -0.02 6.05 15 Total: -1.00 -67.54 268.16 3.16 -64.38 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 1.12 Total: 8.90 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 4.97 Total: -18.04 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -3.51 Total: -100.70 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.88 Total: 42.98 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.30 Total: 2.48 kcal Total: -67.54 3.16 -64.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259944713.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.122 kcal (2) G-P(sol) polarization free energy of solvation -67.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds