Wall clock time and date at job start Mon Mar 30 2020 05:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86801 * 120.00156 * 2 1 4 4 H 1.48500 * 109.47140 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47096 * 120.00126 * 3 2 1 6 6 H 1.48498 * 109.47454 * 240.00420 * 3 2 1 7 7 C 1.39915 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99940 * 206.62838 * 7 2 1 9 9 C 1.41104 * 120.00071 * 26.62491 * 7 2 1 10 10 C 1.40742 * 120.29016 * 26.74372 * 9 7 2 11 11 C 1.36464 * 119.92675 * 180.02562 * 10 9 7 12 12 C 1.38861 * 120.56063 * 359.97438 * 11 10 9 13 13 C 1.38230 * 120.60086 * 0.02562 * 12 11 10 14 14 C 1.38548 * 120.04740 * 359.67857 * 13 12 11 15 15 O 1.35545 * 120.27589 * 180.32138 * 14 13 12 16 16 C 1.36130 * 118.00190 * 262.49476 * 15 14 13 17 17 C 1.38731 * 122.61240 * 185.16416 * 16 15 14 18 18 C 1.33371 * 114.89585 * 179.97438 * 17 16 15 19 19 S 1.75861 * 109.69550 * 0.02562 * 18 17 16 20 20 C 1.33767 * 122.60599 * 4.87865 * 16 15 14 21 21 H 0.96999 * 120.00635 * 175.58138 * 1 2 3 22 22 H 1.08002 * 120.03815 * 0.02562 * 10 9 7 23 23 H 1.08008 * 119.71663 * 179.97438 * 11 10 9 24 24 H 1.07996 * 119.69843 * 180.02562 * 12 11 10 25 25 H 1.08008 * 119.97388 * 179.97438 * 13 12 11 26 26 H 1.08005 * 122.54999 * 359.96077 * 17 16 15 27 27 H 1.08005 * 125.15033 * 179.97438 * 18 17 16 28 28 H 1.08000 * 125.20891 * 359.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 1.2778 2.7465 0.0006 5 1 3.0965 1.6963 1.2125 6 1 3.0965 1.6965 -1.2125 7 6 2.0083 -1.2117 -0.0005 8 1 3.0024 -1.2615 0.4186 9 6 1.4150 -2.3687 -0.5487 10 6 0.4387 -2.2564 -1.5562 11 6 -0.1306 -3.3803 -2.0808 12 6 0.2451 -4.6386 -1.6294 13 6 1.2016 -4.7749 -0.6409 14 6 1.8003 -3.6510 -0.0951 15 8 2.7435 -3.7796 0.8699 16 6 2.3545 -3.6378 2.1667 17 6 3.2545 -3.6463 3.2224 18 6 2.7063 -3.4948 4.4288 19 16 0.9626 -3.3299 4.2709 20 6 1.0753 -3.4739 2.5218 21 1 -0.4851 -0.8375 -0.0647 22 1 0.1404 -1.2820 -1.9139 23 1 -0.8798 -3.2902 -2.8535 24 1 -0.2143 -5.5187 -2.0546 25 1 1.4859 -5.7586 -0.2971 26 1 4.3182 -3.7665 3.0783 27 1 3.2507 -3.4771 5.3614 28 1 0.2394 -3.4372 1.8389 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259947632.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:01 Heat of formation + Delta-G solvation = 17.189853 kcal Electronic energy + Delta-G solvation = -15223.250958 eV Core-core repulsion = 12717.110428 eV Total energy + Delta-G solvation = -2506.140530 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.56168 -37.27071 -35.20735 -34.00919 -29.50297 -29.08618 -28.37797 -25.31831 -23.59765 -21.20111 -20.90873 -18.96469 -17.98815 -17.53622 -16.56033 -15.08607 -14.87991 -14.31911 -14.05138 -13.63931 -13.20666 -12.93144 -12.39268 -12.26068 -12.12990 -11.66020 -11.37380 -11.02099 -10.91149 -10.67158 -10.45990 -10.43363 -9.95363 -9.54297 -9.04550 -8.26438 -7.83336 -7.67333 -7.40221 -7.22007 -4.59045 1.54459 2.13344 2.38654 2.61885 2.66389 3.09938 3.20147 3.30589 3.41162 3.91184 4.31153 4.58268 5.30917 5.51320 5.75338 5.98453 6.09799 6.14120 6.31162 6.37114 6.54733 6.74474 6.87599 6.98868 7.17004 7.39392 7.58282 7.65721 7.77271 7.96727 8.04323 8.39566 8.65964 8.92296 9.88832 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.016557 B = 0.011368 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.714428 B = 2462.403043 C = 3519.435344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.037 3.963 3 Si 1.067 2.933 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.491 4.491 8 H 0.082 0.918 9 C 0.090 3.910 10 C -0.211 4.211 11 C -0.079 4.079 12 C -0.252 4.252 13 C -0.071 4.071 14 C -0.066 4.066 15 O -0.233 6.233 16 C 0.114 3.886 17 C -0.134 4.134 18 C -0.204 4.204 19 S 0.076 5.924 20 C -0.285 4.285 21 H 0.300 0.700 22 H 0.107 0.893 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.142 0.858 27 H 0.163 0.837 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.133 -2.777 5.057 6.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.186 4.186 3 Si 0.890 3.110 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.518 4.518 8 H 0.101 0.899 9 C 0.087 3.913 10 C -0.230 4.230 11 C -0.098 4.098 12 C -0.272 4.272 13 C -0.090 4.090 14 C -0.109 4.109 15 O -0.144 6.144 16 C 0.060 3.940 17 C -0.167 4.167 18 C -0.340 4.340 19 S 0.335 5.665 20 C -0.420 4.420 21 H 0.114 0.886 22 H 0.125 0.875 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.115 0.885 26 H 0.160 0.840 27 H 0.181 0.819 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.874 -0.966 6.069 6.207 hybrid contribution 1.046 -1.863 -1.124 2.414 sum 1.921 -2.829 4.945 6.013 Atomic orbital electron populations 1.70534 1.08125 1.34663 1.27280 1.27130 0.95650 1.04556 0.91285 0.83590 0.75712 0.73387 0.78310 1.19669 1.19927 1.19673 1.20531 1.03949 0.93440 1.33854 0.89947 1.17824 0.90730 0.91871 0.90911 1.20808 1.04218 0.97464 1.00505 1.20436 0.98125 0.93074 0.98144 1.20149 1.05157 0.96115 1.05745 1.20718 0.94690 0.96258 0.97311 1.18377 1.03405 0.93065 0.96044 1.84407 1.34645 1.85361 1.10024 1.18363 0.91118 0.97922 0.86560 1.19452 1.00705 1.06223 0.90341 1.25263 0.97375 1.10311 1.01004 1.83797 1.04874 1.74538 1.03325 1.25258 1.00795 1.18622 0.97334 0.88574 0.87454 0.88847 0.88658 0.88506 0.84019 0.81900 0.82069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.24 12.67 55.55 0.70 -19.54 15 2 C 0.04 0.93 4.89 -17.33 -0.08 0.84 15 3 Si 1.07 21.46 30.01 -169.99 -5.10 16.36 15 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 5 H -0.27 -5.32 7.11 56.52 0.40 -4.91 15 6 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 7 C -0.49 -12.88 8.36 -37.87 -0.32 -13.19 15 8 H 0.08 2.21 7.75 -52.49 -0.41 1.80 15 9 C 0.09 2.35 5.23 -106.67 -0.56 1.79 15 10 C -0.21 -5.20 7.81 -39.28 -0.31 -5.51 15 11 C -0.08 -1.77 9.97 -39.99 -0.40 -2.17 15 12 C -0.25 -5.48 10.04 -39.35 -0.40 -5.87 15 13 C -0.07 -1.62 9.98 -39.47 -0.39 -2.01 15 14 C -0.07 -1.63 4.38 -38.28 -0.17 -1.79 15 15 O -0.23 -5.61 9.43 -3.25 -0.03 -5.64 15 16 C 0.11 2.46 6.31 -40.97 -0.26 2.21 15 17 C -0.13 -2.43 10.17 -41.10 -0.42 -2.85 15 18 C -0.20 -3.20 11.22 29.03 0.33 -2.88 15 19 S 0.08 1.29 23.33 -107.50 -2.51 -1.22 15 20 C -0.28 -6.08 10.20 29.16 0.30 -5.78 15 21 H 0.30 7.92 6.32 -40.82 -0.26 7.66 15 22 H 0.11 2.69 6.58 -52.49 -0.35 2.35 15 23 H 0.09 1.82 8.06 -52.48 -0.42 1.40 15 24 H 0.10 1.81 8.06 -52.49 -0.42 1.39 15 25 H 0.10 2.01 8.06 -52.48 -0.42 1.58 15 26 H 0.14 2.24 8.06 -52.48 -0.42 1.82 15 27 H 0.16 1.93 8.06 -52.48 -0.42 1.51 15 28 H 0.16 3.76 7.33 -52.49 -0.38 3.38 15 LS Contribution 263.60 15.07 3.97 3.97 Total: -1.00 -27.18 263.60 -7.94 -35.13 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -2.30 Total: 8.15 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: -2.68 Total: -37.22 kcal Atomic # 7 Polarization: -20.24 SS G_CDS: 0.70 Total: -19.54 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.03 Total: -5.64 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.10 Total: 16.36 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.51 Total: -1.22 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.18 -7.94 -35.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259947632.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.318 kcal (2) G-P(sol) polarization free energy of solvation -27.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds