Wall clock time and date at job start Mon Mar 30 2020 06:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31026 * 1 3 3 Si 1.86797 * 120.00610 * 2 1 4 4 H 1.48504 * 109.47124 * 272.11175 * 3 2 1 5 5 H 1.48506 * 109.46962 * 32.10745 * 3 2 1 6 6 H 1.48498 * 109.47279 * 152.10707 * 3 2 1 7 7 C 1.39698 * 119.99515 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00140 * 344.38625 * 7 2 1 9 9 C 1.41594 * 120.00253 * 164.39110 * 7 2 1 10 10 C 1.41886 * 126.55435 * 341.25858 * 9 7 2 11 11 N 1.30319 * 108.04646 * 179.73818 * 10 9 7 12 12 N 1.39868 * 109.23140 * 0.02562 * 11 10 9 13 13 C 1.46500 * 125.67630 * 179.97438 * 12 11 10 14 14 F 1.39910 * 109.47147 * 353.65407 * 13 12 11 15 15 F 1.39899 * 109.47736 * 113.65556 * 13 12 11 16 16 F 1.39900 * 109.47093 * 233.66000 * 13 12 11 17 17 C 1.34504 * 108.64873 * 359.97438 * 12 11 10 18 18 C 1.50705 * 126.40235 * 180.02562 * 17 12 11 19 19 C 1.53001 * 117.49276 * 133.93814 * 18 17 12 20 20 C 1.53001 * 117.49782 * 65.28089 * 18 17 12 21 21 H 0.97001 * 119.99482 * 0.02562 * 1 2 3 22 22 H 1.08000 * 125.97576 * 359.77271 * 10 9 7 23 23 H 1.08998 * 115.55098 * 279.60445 * 18 17 12 24 24 H 1.08996 * 117.50105 * 359.97438 * 19 18 17 25 25 H 1.08998 * 117.49991 * 145.02159 * 19 18 17 26 26 H 1.09001 * 117.49404 * 214.97647 * 20 18 17 27 27 H 1.09000 * 117.49604 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6176 0.0000 4 1 2.4473 2.0721 -1.3992 5 1 1.4649 2.6394 0.7442 6 1 3.5635 1.4275 0.6550 7 6 2.0086 -1.2099 0.0005 8 1 1.4985 -2.1278 0.2527 9 6 3.3854 -1.2328 -0.3294 10 6 4.1047 -0.2266 -1.0247 11 7 5.3447 -0.6143 -1.1268 12 7 5.4882 -1.8646 -0.5165 13 6 6.7325 -2.6324 -0.4241 14 9 7.7314 -1.9928 -1.1661 15 9 7.1291 -2.7186 0.9147 16 9 6.5253 -3.9190 -0.9329 17 6 4.2938 -2.2447 -0.0286 18 6 3.9947 -3.5259 0.7064 19 6 3.1604 -3.4283 1.9852 20 6 4.6588 -3.7299 2.0696 21 1 -0.4849 0.8401 -0.0004 22 1 3.6961 0.6989 -1.4026 23 1 3.8529 -4.4058 0.0789 24 1 2.8284 -2.4375 2.2951 25 1 2.4701 -4.2442 2.1993 26 1 4.9536 -4.7441 2.3390 27 1 5.3124 -2.9376 2.4345 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259980940.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:29 Heat of formation + Delta-G solvation = -40.289870 kcal Electronic energy + Delta-G solvation = -18370.162828 eV Core-core repulsion = 14909.212930 eV Total energy + Delta-G solvation = -3460.949898 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.85416 -47.52431 -47.50428 -40.08167 -36.24151 -33.69070 -31.68731 -29.64445 -26.33440 -24.10264 -22.19580 -21.91400 -20.84000 -19.49318 -18.46110 -18.26338 -17.47382 -16.37408 -15.65073 -14.81379 -14.38471 -14.31555 -14.07814 -13.92827 -13.71424 -13.68755 -13.43847 -13.26398 -13.20920 -12.59104 -11.57285 -11.36255 -11.08729 -10.94085 -10.80917 -10.10840 -9.98050 -9.74817 -9.44029 -9.27393 -8.75553 -7.70527 -6.83239 -4.29925 2.06473 2.38603 2.96677 3.14475 3.20046 3.37665 3.66015 3.94236 4.18939 4.42465 4.64431 5.14262 5.23537 5.50602 5.59605 5.60285 5.94159 6.11238 6.37057 6.52493 6.63261 6.84864 6.96248 7.05987 7.30236 7.73641 8.33566 8.48645 8.53548 8.88457 10.22073 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.028036 B = 0.009917 C = 0.008092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.469223 B = 2822.641901 C = 3459.386357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.085 3.915 3 Si 0.889 3.111 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.249 1.249 7 C -0.425 4.425 8 H 0.096 0.904 9 C 0.002 3.998 10 C 0.009 3.991 11 N -0.280 5.280 12 N -0.435 5.435 13 C 0.698 3.302 14 F -0.155 7.155 15 F -0.165 7.165 16 F -0.163 7.163 17 C -0.062 4.062 18 C -0.062 4.062 19 C -0.144 4.144 20 C -0.190 4.190 21 H 0.282 0.718 22 H 0.173 0.827 23 H 0.099 0.901 24 H 0.107 0.893 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.722 -3.719 1.645 8.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.131 4.131 3 Si 0.717 3.283 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.173 1.173 7 C -0.457 4.457 8 H 0.114 0.886 9 C -0.007 4.007 10 C -0.181 4.181 11 N -0.098 5.098 12 N -0.236 5.236 13 C 0.560 3.440 14 F -0.137 7.137 15 F -0.146 7.146 16 F -0.145 7.145 17 C -0.178 4.178 18 C -0.082 4.082 19 C -0.182 4.182 20 C -0.227 4.227 21 H 0.092 0.908 22 H 0.189 0.811 23 H 0.116 0.884 24 H 0.126 0.874 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.720 -3.435 1.257 9.456 hybrid contribution -0.298 0.524 0.159 0.624 sum 8.422 -2.911 1.416 9.022 Atomic orbital electron populations 1.69718 1.07470 1.29555 1.38217 1.25826 0.94678 1.00607 0.91992 0.86792 0.81125 0.81369 0.79030 1.19395 1.21181 1.17292 1.18619 0.90081 0.95920 1.41103 0.88640 1.18015 0.94236 0.90776 0.97667 1.24208 0.91562 1.00885 1.01445 1.76696 1.20547 0.93893 1.18659 1.48122 1.05380 1.17144 1.53003 1.17283 0.77144 0.75117 0.74437 1.93222 1.61362 1.82058 1.77058 1.93253 1.90584 1.96004 1.34809 1.93252 1.94666 1.39393 1.87176 1.19661 0.83408 1.01293 1.13456 1.19873 1.05765 0.94008 0.88553 1.22848 0.92256 1.03575 0.99517 1.23074 0.96987 1.01760 1.00918 0.90765 0.81058 0.88360 0.87439 0.89195 0.89449 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.31 13.94 55.54 0.77 -20.53 15 2 C 0.08 2.13 5.50 -17.35 -0.10 2.04 15 3 Si 0.89 19.38 24.51 -169.99 -4.17 15.21 15 4 H -0.27 -5.55 6.72 56.52 0.38 -5.17 15 5 H -0.29 -6.07 7.11 56.52 0.40 -5.67 15 6 H -0.25 -5.58 6.48 56.52 0.37 -5.21 15 7 C -0.43 -10.89 8.65 -37.76 -0.33 -11.21 15 8 H 0.10 2.56 7.50 -52.48 -0.39 2.17 15 9 C 0.00 0.06 5.46 -106.84 -0.58 -0.53 15 10 C 0.01 0.21 9.23 -16.80 -0.16 0.05 15 11 N -0.28 -6.54 12.12 30.97 0.38 -6.16 15 12 N -0.44 -9.64 3.85 -60.72 -0.23 -9.87 15 13 C 0.70 13.13 3.71 59.85 0.22 13.35 15 14 F -0.16 -2.82 17.14 2.25 0.04 -2.78 15 15 F -0.16 -2.89 15.62 2.25 0.04 -2.86 15 16 F -0.16 -2.87 16.96 2.25 0.04 -2.83 15 17 C -0.06 -1.42 6.41 -81.04 -0.52 -1.94 15 18 C -0.06 -1.20 5.34 -91.77 -0.49 -1.69 15 19 C -0.14 -2.57 9.13 -26.69 -0.24 -2.81 15 20 C -0.19 -3.17 9.32 -26.69 -0.25 -3.42 15 21 H 0.28 6.68 8.30 -40.82 -0.34 6.34 15 22 H 0.17 3.80 4.27 -52.49 -0.22 3.58 15 23 H 0.10 1.81 8.14 -51.93 -0.42 1.38 15 24 H 0.11 2.14 7.58 -51.93 -0.39 1.74 15 25 H 0.09 1.40 8.14 -51.93 -0.42 0.98 15 26 H 0.09 1.24 8.14 -51.93 -0.42 0.82 15 27 H 0.09 1.59 7.23 -51.93 -0.38 1.22 15 LS Contribution 246.50 15.07 3.71 3.71 Total: -1.00 -26.39 246.50 -3.71 -30.10 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -1.85 Total: 2.18 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -2.44 Total: -6.16 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.92 Total: -36.57 kcal Atomic # 9 Polarization: -8.59 SS G_CDS: 0.11 Total: -8.48 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.17 Total: 15.21 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -26.39 -3.71 -30.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980940.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.190 kcal (2) G-P(sol) polarization free energy of solvation -26.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds