Wall clock time and date at job start Mon Mar 30 2020 06:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31026 * 1 3 3 Si 1.86797 * 120.00610 * 2 1 4 4 H 1.48504 * 109.47124 * 272.11175 * 3 2 1 5 5 H 1.48506 * 109.46962 * 32.10745 * 3 2 1 6 6 H 1.48498 * 109.47279 * 152.10707 * 3 2 1 7 7 C 1.39698 * 119.99515 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00140 * 344.38625 * 7 2 1 9 9 C 1.41594 * 120.00253 * 164.39110 * 7 2 1 10 10 C 1.41886 * 126.55435 * 341.25858 * 9 7 2 11 11 N 1.30319 * 108.04646 * 179.73818 * 10 9 7 12 12 N 1.39868 * 109.23140 * 0.02562 * 11 10 9 13 13 C 1.46500 * 125.67630 * 179.97438 * 12 11 10 14 14 F 1.39910 * 109.47147 * 353.65407 * 13 12 11 15 15 F 1.39899 * 109.47736 * 113.65556 * 13 12 11 16 16 F 1.39900 * 109.47093 * 233.66000 * 13 12 11 17 17 C 1.34504 * 108.64873 * 359.97438 * 12 11 10 18 18 C 1.50705 * 126.40235 * 180.02562 * 17 12 11 19 19 C 1.53001 * 117.49276 * 133.93814 * 18 17 12 20 20 C 1.53001 * 117.49782 * 65.28089 * 18 17 12 21 21 H 0.97001 * 119.99482 * 0.02562 * 1 2 3 22 22 H 1.08000 * 125.97576 * 359.77271 * 10 9 7 23 23 H 1.08998 * 115.55098 * 279.60445 * 18 17 12 24 24 H 1.08996 * 117.50105 * 359.97438 * 19 18 17 25 25 H 1.08998 * 117.49991 * 145.02159 * 19 18 17 26 26 H 1.09001 * 117.49404 * 214.97647 * 20 18 17 27 27 H 1.09000 * 117.49604 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6176 0.0000 4 1 2.4473 2.0721 -1.3992 5 1 1.4649 2.6394 0.7442 6 1 3.5635 1.4275 0.6550 7 6 2.0086 -1.2099 0.0005 8 1 1.4985 -2.1278 0.2527 9 6 3.3854 -1.2328 -0.3294 10 6 4.1047 -0.2266 -1.0247 11 7 5.3447 -0.6143 -1.1268 12 7 5.4882 -1.8646 -0.5165 13 6 6.7325 -2.6324 -0.4241 14 9 7.7314 -1.9928 -1.1661 15 9 7.1291 -2.7186 0.9147 16 9 6.5253 -3.9190 -0.9329 17 6 4.2938 -2.2447 -0.0286 18 6 3.9947 -3.5259 0.7064 19 6 3.1604 -3.4283 1.9852 20 6 4.6588 -3.7299 2.0696 21 1 -0.4849 0.8401 -0.0004 22 1 3.6961 0.6989 -1.4026 23 1 3.8529 -4.4058 0.0789 24 1 2.8284 -2.4375 2.2951 25 1 2.4701 -4.2442 2.1993 26 1 4.9536 -4.7441 2.3390 27 1 5.3124 -2.9376 2.4345 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259980940.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:28 Heat of formation + Delta-G solvation = -55.990417 kcal Electronic energy + Delta-G solvation = -18370.843655 eV Core-core repulsion = 14909.212930 eV Total energy + Delta-G solvation = -3461.630725 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -51.35084 -49.01316 -48.98278 -41.87666 -37.73609 -35.54932 -33.47467 -31.45700 -28.07160 -25.81684 -23.79844 -23.45647 -22.47686 -21.19472 -19.96681 -19.90572 -19.08875 -18.15276 -17.33530 -16.40492 -15.99129 -15.77915 -15.67205 -15.40710 -15.31205 -15.18251 -15.09057 -14.91860 -14.81760 -14.28245 -13.36353 -13.14431 -12.83129 -12.52939 -12.28487 -11.84897 -11.52420 -11.46668 -11.18856 -10.95094 -10.52597 -9.55419 -8.70644 -6.22290 0.43971 0.61131 1.22329 1.39333 1.46076 1.80481 1.81945 2.15666 2.63350 2.95405 3.10115 3.25841 3.65614 3.82080 4.09667 4.12960 4.37434 4.69068 4.80792 4.98516 5.10791 5.22314 5.27017 5.40676 5.51064 5.94282 6.34587 6.64304 6.65867 6.97988 8.39281 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.028036 B = 0.009917 C = 0.008092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.469223 B = 2822.641901 C = 3459.386357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.049 3.951 3 Si 0.940 3.060 4 H -0.249 1.249 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.442 4.442 8 H 0.070 0.930 9 C -0.030 4.030 10 C 0.000 4.000 11 N -0.292 5.292 12 N -0.441 5.441 13 C 0.702 3.298 14 F -0.149 7.149 15 F -0.153 7.153 16 F -0.152 7.152 17 C -0.040 4.040 18 C -0.091 4.091 19 C -0.145 4.145 20 C -0.161 4.161 21 H 0.288 0.712 22 H 0.183 0.817 23 H 0.113 0.887 24 H 0.080 0.920 25 H 0.114 0.886 26 H 0.123 0.877 27 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.299 -4.337 2.004 10.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.175 1.175 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.475 4.475 8 H 0.088 0.912 9 C -0.039 4.039 10 C -0.188 4.188 11 N -0.111 5.111 12 N -0.242 5.242 13 C 0.566 3.434 14 F -0.131 7.131 15 F -0.135 7.135 16 F -0.133 7.133 17 C -0.158 4.158 18 C -0.111 4.111 19 C -0.182 4.182 20 C -0.198 4.198 21 H 0.099 0.901 22 H 0.199 0.801 23 H 0.131 0.869 24 H 0.099 0.901 25 H 0.132 0.868 26 H 0.141 0.859 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.321 -4.056 1.604 11.204 hybrid contribution -0.662 0.547 0.076 0.862 sum 9.659 -3.509 1.679 10.413 Atomic orbital electron populations 1.69760 1.08562 1.30605 1.40267 1.26402 0.95213 1.03064 0.91619 0.85996 0.79364 0.78258 0.79898 1.17460 1.20324 1.18399 1.18504 0.90785 0.95435 1.42761 0.91234 1.18177 0.94332 0.92282 0.99134 1.24356 0.91594 1.01306 1.01544 1.76651 1.20375 0.94637 1.19419 1.48473 1.06482 1.17079 1.52157 1.17158 0.76258 0.75129 0.74885 1.93243 1.60793 1.82049 1.76981 1.93276 1.90293 1.95929 1.33992 1.93277 1.94565 1.38395 1.87097 1.20284 0.83249 1.01418 1.10833 1.20096 1.08356 0.92965 0.89667 1.22838 0.93831 1.03144 0.98407 1.23132 0.95679 1.03439 0.97533 0.90149 0.80074 0.86926 0.90138 0.86800 0.85868 0.89946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -45.72 13.94 21.79 0.30 -45.41 15 2 C 0.05 2.50 5.50 85.17 0.47 2.97 15 3 Si 0.94 39.87 24.51 68.60 1.68 41.55 15 4 H -0.25 -9.74 6.72 99.48 0.67 -9.07 15 5 H -0.28 -11.26 7.11 99.48 0.71 -10.56 15 6 H -0.26 -11.35 6.48 99.48 0.64 -10.70 15 7 C -0.44 -23.18 8.65 23.45 0.20 -22.98 15 8 H 0.07 3.88 7.50 -2.91 -0.02 3.86 15 9 C -0.03 -1.46 5.46 -21.30 -0.12 -1.58 15 10 C 0.00 0.02 9.23 85.82 0.79 0.81 15 11 N -0.29 -13.27 12.12 -55.93 -0.68 -13.94 15 12 N -0.44 -18.76 3.85 -346.01 -1.33 -20.10 15 13 C 0.70 24.58 3.71 127.77 0.47 25.05 15 14 F -0.15 -5.05 17.14 44.97 0.77 -4.28 15 15 F -0.15 -4.92 15.62 44.97 0.70 -4.21 15 16 F -0.15 -4.89 16.96 44.97 0.76 -4.12 15 17 C -0.04 -1.78 6.41 42.40 0.27 -1.51 15 18 C -0.09 -3.34 5.34 -11.54 -0.06 -3.40 15 19 C -0.14 -4.93 9.13 30.62 0.28 -4.65 15 20 C -0.16 -4.84 9.32 30.62 0.29 -4.55 15 21 H 0.29 13.90 8.30 -92.71 -0.77 13.13 15 22 H 0.18 7.87 4.27 -2.91 -0.01 7.86 15 23 H 0.11 3.86 8.14 -2.39 -0.02 3.84 15 24 H 0.08 3.21 7.58 -2.39 -0.02 3.19 15 25 H 0.11 3.31 8.14 -2.39 -0.02 3.29 15 26 H 0.12 2.89 8.14 -2.39 -0.02 2.87 15 27 H 0.08 2.65 7.23 -2.39 -0.02 2.63 15 Total: -1.00 -55.96 246.50 5.93 -50.03 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.12 Total: 10.34 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 2.60 Total: -9.85 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -1.71 Total: -79.45 kcal Atomic # 9 Polarization: -14.85 SS G_CDS: 2.24 Total: -12.61 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 1.68 Total: 41.55 kcal Total: -55.96 5.93 -50.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259980940.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.960 kcal (2) G-P(sol) polarization free energy of solvation -55.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds