Wall clock time and date at job start Mon Mar 30 2020 05:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08989 * 109.47311 * 2 1 4 4 C 1.50702 * 109.46899 * 120.00704 * 2 1 3 5 5 H 1.07990 * 120.00455 * 119.99713 * 4 2 1 6 6 C 1.37877 * 119.99891 * 299.99184 * 4 2 1 7 7 N 1.31516 * 120.00426 * 180.02562 * 6 4 2 8 8 Si 1.86811 * 119.99779 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.46901 * 90.00219 * 8 6 4 10 10 H 1.48496 * 109.46873 * 209.99791 * 8 6 4 11 11 H 1.48497 * 109.47114 * 329.99997 * 8 6 4 12 12 C 1.50704 * 109.46729 * 239.99751 * 2 1 3 13 13 C 1.38224 * 119.99270 * 300.00648 * 12 2 1 14 14 C 1.38390 * 120.01049 * 180.25784 * 13 12 2 15 15 F 1.35102 * 120.00126 * 179.74401 * 14 13 12 16 16 C 1.38588 * 119.99255 * 359.48413 * 14 13 12 17 17 Cl 1.73591 * 120.01258 * 180.23368 * 16 14 13 18 18 C 1.38260 * 119.97183 * 0.49141 * 16 14 13 19 19 C 1.38434 * 119.98208 * 119.98164 * 12 2 1 20 20 F 1.35097 * 119.99571 * 359.97438 * 19 12 2 21 21 H 1.08997 * 109.47134 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46773 * 299.99864 * 1 2 3 23 23 H 1.09003 * 109.46789 * 59.99582 * 1 2 3 24 24 H 0.96998 * 120.00096 * 179.97438 * 7 6 4 25 25 H 1.08002 * 119.99032 * 359.97120 * 13 12 2 26 26 H 1.08001 * 120.00444 * 179.74671 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6993 -0.2396 2.4827 7 7 2.1380 -0.8593 3.5565 8 14 0.6249 1.2790 2.6542 9 1 -0.8026 0.8727 2.6999 10 1 0.9762 1.9949 3.9068 11 1 0.8473 2.1765 1.4921 12 6 2.0323 -0.7105 -1.2305 13 6 1.6981 -2.0338 -1.4491 14 6 2.1635 -2.6882 -2.5762 15 9 1.8410 -3.9831 -2.7870 16 6 2.9560 -2.0134 -3.4913 17 17 3.5350 -2.8320 -4.9084 18 6 3.2895 -0.6896 -3.2725 19 6 2.8278 -0.0373 -2.1418 20 9 3.1532 1.2563 -1.9280 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.9040 -0.5277 4.4375 25 1 1.0775 -2.5585 -0.7377 26 1 3.9104 -0.1645 -3.9832 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259997617.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:55 Heat of formation + Delta-G solvation = -92.205793 kcal Electronic energy + Delta-G solvation = -15475.023727 eV Core-core repulsion = 12407.866210 eV Total energy + Delta-G solvation = -3067.157517 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -50.04549 -49.97018 -40.24981 -37.83461 -36.28682 -33.80060 -31.46592 -30.39656 -27.13731 -25.17764 -23.87444 -21.80837 -19.13002 -18.85484 -18.30049 -18.04333 -17.08579 -16.76164 -16.40849 -15.77974 -15.42033 -15.17574 -14.94638 -14.47983 -14.13057 -13.91360 -13.75432 -13.52739 -13.19033 -12.81015 -12.20646 -12.09981 -12.06438 -11.88115 -11.33126 -11.23558 -10.76297 -10.03830 -9.51191 -8.31227 -6.37215 -0.24182 -0.11448 0.80394 1.32091 1.38957 1.48164 2.19155 2.31784 2.92448 3.04108 3.16979 3.51780 3.66385 3.98347 4.31731 4.48602 4.56052 4.65533 4.70759 4.90820 4.92964 5.02160 5.19514 5.52125 5.59908 5.61183 6.23068 6.68313 7.27992 8.84597 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.035575 B = 0.007073 C = 0.006460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.889739 B = 3957.666489 C = 4333.641264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.035 3.965 3 H 0.041 0.959 4 C -0.514 4.514 5 H 0.041 0.959 6 C 0.019 3.981 7 N -0.943 5.943 8 Si 0.944 3.056 9 H -0.262 1.262 10 H -0.301 1.301 11 H -0.247 1.247 12 C -0.048 4.048 13 C -0.108 4.108 14 C 0.097 3.903 15 F -0.128 7.128 16 C -0.062 4.062 17 Cl -0.033 7.033 18 C -0.103 4.103 19 C 0.085 3.915 20 F -0.133 7.133 21 H 0.062 0.938 22 H 0.038 0.962 23 H 0.064 0.936 24 H 0.267 0.733 25 H 0.150 0.850 26 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.863 0.420 -15.512 15.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 H 0.059 0.941 4 C -0.552 4.552 5 H 0.059 0.941 6 C -0.179 4.179 7 N -0.583 5.583 8 Si 0.771 3.229 9 H -0.187 1.187 10 H -0.229 1.229 11 H -0.171 1.171 12 C -0.050 4.050 13 C -0.127 4.127 14 C 0.077 3.923 15 F -0.107 7.107 16 C -0.090 4.090 17 Cl -0.004 7.004 18 C -0.122 4.122 19 C 0.066 3.934 20 F -0.112 7.112 21 H 0.081 0.919 22 H 0.056 0.944 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.168 0.832 26 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.806 0.333 -15.466 15.491 hybrid contribution -0.195 0.296 0.712 0.796 sum -1.001 0.629 -14.754 14.801 Atomic orbital electron populations 1.22117 0.95684 1.02095 1.00215 1.18259 0.94177 0.96012 0.89934 0.94105 1.21075 1.31665 1.12677 0.89771 0.94098 1.25783 0.97078 0.99693 0.95310 1.70019 1.47247 1.42354 0.98683 0.85913 0.79426 0.80156 0.77377 1.18733 1.22871 1.17111 1.20103 0.95361 0.94115 0.95371 1.20865 1.01674 0.94032 0.96119 1.17389 0.99776 0.79536 0.95602 1.91517 1.91052 1.33402 1.94692 1.20503 1.02528 0.93851 0.92087 1.98375 1.87222 1.78261 1.36497 1.20929 1.01409 0.92480 0.97406 1.17452 1.00209 0.79757 0.96009 1.91481 1.91012 1.33873 1.94790 0.91880 0.94374 0.91699 0.92363 0.83203 0.80107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.52 8.49 71.98 0.61 -4.91 15 2 C 0.03 1.53 2.05 -12.28 -0.03 1.50 15 3 H 0.04 1.84 6.18 -2.39 -0.01 1.82 15 4 C -0.51 -27.67 8.82 25.60 0.23 -27.45 15 5 H 0.04 2.44 7.84 -2.92 -0.02 2.42 15 6 C 0.02 1.08 5.45 84.65 0.46 1.54 15 7 N -0.94 -57.07 13.96 21.45 0.30 -56.77 15 8 Si 0.94 42.93 24.37 68.60 1.67 44.61 15 9 H -0.26 -11.17 6.87 99.48 0.68 -10.48 15 10 H -0.30 -13.84 7.11 99.48 0.71 -13.13 15 11 H -0.25 -10.45 6.53 99.48 0.65 -9.80 15 12 C -0.05 -1.82 4.74 -19.82 -0.09 -1.91 15 13 C -0.11 -3.77 8.68 22.30 0.19 -3.58 15 14 C 0.10 3.02 7.27 22.39 0.16 3.18 15 15 F -0.13 -3.93 16.84 44.97 0.76 -3.18 15 16 C -0.06 -1.69 6.32 22.36 0.14 -1.55 15 17 Cl -0.03 -0.76 28.62 -2.72 -0.08 -0.83 15 18 C -0.10 -2.73 9.81 22.33 0.22 -2.51 15 19 C 0.09 2.83 7.24 22.37 0.16 2.99 15 20 F -0.13 -4.56 16.19 44.97 0.73 -3.84 15 21 H 0.06 2.31 7.39 -2.39 -0.02 2.29 15 22 H 0.04 1.52 3.27 -2.39 -0.01 1.51 15 23 H 0.06 2.07 8.14 -2.39 -0.02 2.05 15 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 15 25 H 0.15 5.37 7.57 -2.91 -0.02 5.35 15 26 H 0.18 3.57 8.06 -2.91 -0.02 3.54 15 Total: -1.00 -59.29 246.13 6.58 -52.72 By element: Atomic # 1 Polarization: -1.15 SS G_CDS: 1.14 Total: -0.01 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 2.06 Total: -32.69 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.30 Total: -56.77 kcal Atomic # 9 Polarization: -8.50 SS G_CDS: 1.49 Total: -7.01 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.67 Total: 44.61 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.83 kcal Total: -59.29 6.58 -52.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259997617.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.491 kcal (2) G-P(sol) polarization free energy of solvation -59.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds